Wall clock time and date at job start Tue Mar 31 2020 06:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 C 1.50707 * 109.47170 * 240.00558 * 2 1 3 5 5 H 1.07995 * 119.99472 * 239.99731 * 4 2 1 6 6 C 1.37870 * 120.00241 * 59.99603 * 4 2 1 7 7 N 1.31522 * 120.00214 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00170 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46749 * 60.00133 * 8 6 4 10 10 H 1.48495 * 109.47214 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46960 * 300.00216 * 8 6 4 12 12 N 1.46498 * 109.47372 * 120.00255 * 2 1 3 13 13 S 1.65603 * 119.99715 * 263.63311 * 12 2 1 14 14 O 1.42097 * 106.40492 * 311.71127 * 13 12 2 15 15 O 1.42104 * 106.39806 * 178.79239 * 13 12 2 16 16 C 1.76196 * 107.21927 * 65.25292 * 13 12 2 17 17 C 1.37906 * 120.09046 * 243.98156 * 16 13 12 18 18 C 1.38384 * 120.17256 * 180.02562 * 17 16 13 19 19 C 1.38427 * 120.34915 * 0.02562 * 18 17 16 20 20 C 1.37861 * 120.17206 * 359.97438 * 19 18 17 21 21 C 1.39835 * 120.08672 * 64.00679 * 16 13 12 22 22 C 1.47169 * 120.17200 * 359.95235 * 21 16 13 23 23 O 1.21260 * 119.99987 * 174.71058 * 22 21 16 24 24 H 1.08998 * 109.47130 * 299.99835 * 1 2 3 25 25 H 1.09003 * 109.47488 * 59.99802 * 1 2 3 26 26 H 1.09003 * 109.46946 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00267 * 180.02562 * 7 6 4 28 28 H 0.96994 * 120.00053 * 83.62912 * 12 2 1 29 29 H 1.08000 * 119.91216 * 0.02952 * 17 16 13 30 30 H 1.08001 * 119.81989 * 180.27900 * 18 17 16 31 31 H 1.07999 * 119.90869 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.08512 * 180.02562 * 20 19 18 33 33 H 1.07992 * 119.99891 * 354.71868 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0183 -0.6906 1.1961 13 16 2.4443 0.1799 2.5389 14 8 3.2865 1.2307 2.0854 15 8 2.8428 -0.7667 3.5210 16 6 0.9798 0.9450 3.1507 17 6 0.8712 2.3197 3.1629 18 6 -0.2781 2.9224 3.6436 19 6 -1.3267 2.1520 4.1160 20 6 -1.2334 0.7766 4.1104 21 6 -0.0753 0.1598 3.6257 22 6 0.0321 -1.3079 3.6158 23 8 -0.8423 -1.9833 4.1156 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7088 1.1615 -3.4844 28 1 2.0921 -1.6578 1.2015 29 1 1.6852 2.9275 2.7963 30 1 -0.3588 3.9994 3.6463 31 1 -2.2201 2.6299 4.4899 32 1 -2.0525 0.1769 4.4790 33 1 0.8898 -1.7835 3.1636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751057439.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:16 Heat of formation + Delta-G solvation = -78.306903 kcal Electronic energy + Delta-G solvation = -20615.213323 eV Core-core repulsion = 17347.518491 eV Total energy + Delta-G solvation = -3267.694832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.88668 -38.15732 -36.88818 -35.60931 -35.50273 -32.31992 -31.71420 -31.23730 -28.45607 -25.31556 -25.08000 -23.30868 -21.17838 -21.05142 -19.23645 -17.91350 -17.44318 -16.84615 -16.37780 -15.83742 -15.21123 -14.88780 -14.67582 -14.42503 -14.35061 -14.12391 -13.67650 -12.81797 -12.75576 -12.53631 -12.30200 -11.88079 -11.79934 -11.70254 -11.57272 -11.25183 -11.01493 -10.80127 -10.66264 -10.42157 -10.16406 -9.88644 -9.48342 -9.30248 -9.11568 -8.72042 -8.40087 -6.18001 -4.25613 0.28048 0.77376 1.01205 2.32450 3.25546 3.30263 3.31030 3.36451 3.59159 4.02354 4.07615 4.32255 4.55186 4.70375 4.91007 5.05440 5.10687 5.15158 5.43105 5.50918 5.74862 5.89033 6.06031 6.18472 6.20080 6.65967 6.66606 6.72413 6.90508 7.19756 7.46422 7.56568 7.73806 7.92449 8.17217 8.76446 9.40696 10.88122 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.006093 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.874234 B = 4594.075040 C = 4702.574672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.269 3.731 3 H 0.054 0.946 4 C -0.523 4.523 5 H 0.066 0.934 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -1.099 6.099 13 S 2.681 3.319 14 O -0.951 6.951 15 O -0.976 6.976 16 C -0.621 4.621 17 C -0.030 4.030 18 C -0.108 4.108 19 C -0.086 4.086 20 C -0.083 4.083 21 C -0.091 4.091 22 C 0.374 3.626 23 O -0.444 6.444 24 H 0.012 0.988 25 H 0.096 0.904 26 H 0.035 0.965 27 H 0.265 0.735 28 H 0.411 0.589 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 2.891 10.627 11.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.165 3.835 3 H 0.072 0.928 4 C -0.563 4.563 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.862 5.862 13 S 2.768 3.232 14 O -0.941 6.941 15 O -0.966 6.966 16 C -0.706 4.706 17 C -0.049 4.049 18 C -0.127 4.127 19 C -0.104 4.104 20 C -0.102 4.102 21 C -0.094 4.094 22 C 0.232 3.768 23 O -0.316 6.316 24 H 0.031 0.969 25 H 0.114 0.886 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.245 0.755 29 H 0.168 0.832 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.390 2.942 11.122 11.994 hybrid contribution -0.519 -0.431 -0.950 1.165 sum -3.909 2.511 10.173 11.183 Atomic orbital electron populations 1.22312 0.98526 1.00079 1.01057 1.18671 0.90752 0.93213 0.80885 0.92840 1.21165 1.32127 1.13289 0.89679 0.91599 1.24907 0.94804 0.94993 0.99107 1.69845 1.36095 1.22543 1.24137 0.86484 0.79325 0.79574 0.81611 1.20154 1.21188 1.20046 1.55625 1.83723 1.18840 1.27984 1.02297 0.73858 0.73941 0.73126 1.93579 1.62216 1.57538 1.80788 1.93569 1.81361 1.61455 1.60217 1.31562 1.21130 1.04885 1.12983 1.21028 0.98275 0.92531 0.93053 1.21543 0.93260 1.00652 0.97270 1.21398 0.98588 0.93709 0.96700 1.21500 0.97003 0.95070 0.96584 1.20525 0.94424 0.95839 0.98567 1.24402 0.88881 0.87702 0.75865 1.90484 1.40057 1.66327 1.34726 0.96927 0.88594 0.94627 0.92467 0.75465 0.83213 0.84625 0.84844 0.84348 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.29 37.16 0.35 -3.13 16 2 C 0.27 6.10 2.90 -69.08 -0.20 5.90 16 3 H 0.05 1.33 7.49 -51.93 -0.39 0.94 16 4 C -0.52 -13.21 8.77 -34.44 -0.30 -13.51 16 5 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.60 11.32 55.43 0.63 -22.97 16 8 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -1.10 -20.64 4.82 -5.88 -0.03 -20.66 16 13 S 2.68 47.73 4.91 -107.50 -0.53 47.21 16 14 O -0.95 -19.46 16.30 -57.17 -0.93 -20.39 16 15 O -0.98 -17.79 16.15 -57.17 -0.92 -18.72 16 16 C -0.62 -9.88 4.99 -39.11 -0.19 -10.07 16 17 C -0.03 -0.42 9.54 -39.65 -0.38 -0.80 16 18 C -0.11 -1.24 10.04 -39.46 -0.40 -1.64 16 19 C -0.09 -0.95 10.03 -39.65 -0.40 -1.34 16 20 C -0.08 -1.09 9.60 -39.11 -0.38 -1.46 16 21 C -0.09 -1.40 5.46 -105.06 -0.57 -1.98 16 22 C 0.37 5.93 10.49 34.36 0.36 6.29 16 23 O -0.44 -7.63 17.18 5.57 0.10 -7.54 16 24 H 0.01 0.23 6.74 -51.93 -0.35 -0.12 16 25 H 0.10 2.32 6.07 -51.93 -0.32 2.00 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 28 H 0.41 6.80 8.65 -34.47 -0.30 6.50 16 29 H 0.15 2.00 7.33 -52.49 -0.38 1.61 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.14 1.63 7.66 -52.48 -0.40 1.23 16 33 H 0.11 1.63 5.30 -52.49 -0.28 1.35 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -30.60 297.58 -7.66 -38.26 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.23 Total: 5.33 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.21 Total: -20.15 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.60 Total: -43.63 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -1.76 Total: -46.65 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 47.73 SS G_CDS: -0.53 Total: 47.21 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.60 -7.66 -38.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751057439.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.044 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds