Wall clock time and date at job start Tue Mar 31 2020 06:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 C 1.50707 * 109.47170 * 240.00558 * 2 1 3 5 5 H 1.07995 * 119.99472 * 239.99731 * 4 2 1 6 6 C 1.37870 * 120.00241 * 59.99603 * 4 2 1 7 7 N 1.31522 * 120.00214 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00170 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46749 * 60.00133 * 8 6 4 10 10 H 1.48495 * 109.47214 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46960 * 300.00216 * 8 6 4 12 12 N 1.46498 * 109.47372 * 120.00255 * 2 1 3 13 13 S 1.65603 * 119.99715 * 263.63311 * 12 2 1 14 14 O 1.42097 * 106.40492 * 311.71127 * 13 12 2 15 15 O 1.42104 * 106.39806 * 178.79239 * 13 12 2 16 16 C 1.76196 * 107.21927 * 65.25292 * 13 12 2 17 17 C 1.37906 * 120.09046 * 243.98156 * 16 13 12 18 18 C 1.38384 * 120.17256 * 180.02562 * 17 16 13 19 19 C 1.38427 * 120.34915 * 0.02562 * 18 17 16 20 20 C 1.37861 * 120.17206 * 359.97438 * 19 18 17 21 21 C 1.39835 * 120.08672 * 64.00679 * 16 13 12 22 22 C 1.47169 * 120.17200 * 359.95235 * 21 16 13 23 23 O 1.21260 * 119.99987 * 174.71058 * 22 21 16 24 24 H 1.08998 * 109.47130 * 299.99835 * 1 2 3 25 25 H 1.09003 * 109.47488 * 59.99802 * 1 2 3 26 26 H 1.09003 * 109.46946 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00267 * 180.02562 * 7 6 4 28 28 H 0.96994 * 120.00053 * 83.62912 * 12 2 1 29 29 H 1.08000 * 119.91216 * 0.02952 * 17 16 13 30 30 H 1.08001 * 119.81989 * 180.27900 * 18 17 16 31 31 H 1.07999 * 119.90869 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.08512 * 180.02562 * 20 19 18 33 33 H 1.07992 * 119.99891 * 354.71868 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0183 -0.6906 1.1961 13 16 2.4443 0.1799 2.5389 14 8 3.2865 1.2307 2.0854 15 8 2.8428 -0.7667 3.5210 16 6 0.9798 0.9450 3.1507 17 6 0.8712 2.3197 3.1629 18 6 -0.2781 2.9224 3.6436 19 6 -1.3267 2.1520 4.1160 20 6 -1.2334 0.7766 4.1104 21 6 -0.0753 0.1598 3.6257 22 6 0.0321 -1.3079 3.6158 23 8 -0.8423 -1.9833 4.1156 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7088 1.1615 -3.4844 28 1 2.0921 -1.6578 1.2015 29 1 1.6852 2.9275 2.7963 30 1 -0.3588 3.9994 3.6463 31 1 -2.2201 2.6299 4.4899 32 1 -2.0525 0.1769 4.4790 33 1 0.8898 -1.7835 3.1636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751057439.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:16 Heat of formation + Delta-G solvation = -99.895857 kcal Electronic energy + Delta-G solvation = -20616.149490 eV Core-core repulsion = 17347.518491 eV Total energy + Delta-G solvation = -3268.630999 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.02444 -39.30176 -38.37884 -37.32930 -37.01253 -34.16284 -32.78911 -32.28413 -30.18761 -27.23185 -26.19820 -24.39165 -22.82783 -22.29567 -20.64484 -19.33161 -18.94227 -18.05209 -17.83320 -17.32028 -16.86422 -16.29473 -15.82991 -15.67654 -15.58274 -15.30849 -15.18320 -14.53994 -14.07967 -13.90732 -13.60710 -13.52488 -13.24025 -13.19679 -13.01475 -12.79475 -12.67601 -12.47560 -12.22769 -12.00875 -11.92361 -11.19799 -11.06419 -10.58387 -10.50982 -10.17663 -10.11448 -8.13004 -6.26321 -0.86209 -0.59980 -0.03846 1.18497 1.48092 1.49036 1.55974 1.99169 2.41488 2.46262 2.72254 2.88477 3.17330 3.32263 3.69674 3.80097 4.10070 4.16464 4.32067 4.48324 4.50617 4.73935 4.86452 4.90901 5.00018 5.12224 5.12826 5.22276 5.59480 5.70595 5.75642 5.98194 6.03172 6.10007 6.38441 6.82732 7.42885 8.92060 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.006093 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.874234 B = 4594.075040 C = 4702.574672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.275 3.725 3 H 0.028 0.972 4 C -0.543 4.543 5 H 0.067 0.933 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.275 1.275 12 N -1.100 6.100 13 S 2.693 3.307 14 O -0.984 6.984 15 O -0.984 6.984 16 C -0.633 4.633 17 C -0.046 4.046 18 C -0.099 4.099 19 C -0.071 4.071 20 C -0.086 4.086 21 C -0.113 4.113 22 C 0.373 3.627 23 O -0.463 6.463 24 H 0.033 0.967 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.266 0.734 28 H 0.419 0.581 29 H 0.151 0.849 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.152 0.848 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 3.668 11.393 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.170 3.830 3 H 0.046 0.954 4 C -0.582 4.582 5 H 0.085 0.915 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.862 5.862 13 S 2.785 3.215 14 O -0.974 6.974 15 O -0.974 6.974 16 C -0.722 4.722 17 C -0.066 4.066 18 C -0.117 4.117 19 C -0.089 4.089 20 C -0.105 4.105 21 C -0.115 4.115 22 C 0.232 3.768 23 O -0.336 6.336 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.255 0.745 29 H 0.168 0.832 30 H 0.193 0.807 31 H 0.196 0.804 32 H 0.170 0.830 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.674 3.683 11.877 13.284 hybrid contribution -0.155 -0.579 -1.078 1.234 sum -4.829 3.104 10.799 12.230 Atomic orbital electron populations 1.22115 0.97617 1.00153 1.00815 1.18342 0.91319 0.91895 0.81453 0.95438 1.21571 1.32148 1.13529 0.90972 0.91455 1.25628 0.95081 0.95685 1.01698 1.69959 1.36944 1.23567 1.24580 0.85594 0.78628 0.78790 0.78513 1.19450 1.20986 1.20030 1.55411 1.83829 1.19348 1.27655 1.01592 0.74172 0.73246 0.72527 1.93532 1.64258 1.58321 1.81311 1.93552 1.82107 1.61880 1.59889 1.31022 1.20252 1.05754 1.15150 1.21296 0.99771 0.91882 0.93637 1.22019 0.91807 1.02743 0.95149 1.21930 0.99696 0.92707 0.94538 1.21829 0.96354 0.96474 0.95852 1.20526 0.95437 0.95295 1.00226 1.24557 0.88657 0.88358 0.75274 1.90468 1.40651 1.66769 1.35744 0.94800 0.91047 0.94311 0.92524 0.74498 0.83176 0.80745 0.80441 0.83050 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.39 9.29 71.98 0.67 -5.72 16 2 C 0.28 12.67 2.90 44.25 0.13 12.80 16 3 H 0.03 1.42 7.49 -2.39 -0.02 1.40 16 4 C -0.54 -27.67 8.77 25.60 0.22 -27.44 16 5 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -48.91 11.32 21.45 0.24 -48.66 16 8 Si 0.96 41.32 29.54 68.60 2.03 43.34 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 N -1.10 -41.91 4.82 -172.52 -0.83 -42.74 16 13 S 2.69 97.12 4.91 -56.49 -0.28 96.84 16 14 O -0.98 -41.25 16.30 -128.00 -2.09 -43.34 16 15 O -0.98 -36.21 16.15 -128.00 -2.07 -38.28 16 16 C -0.63 -19.65 4.99 22.58 0.11 -19.54 16 17 C -0.05 -1.24 9.54 22.23 0.21 -1.03 16 18 C -0.10 -1.88 10.04 22.35 0.22 -1.65 16 19 C -0.07 -1.24 10.03 22.23 0.22 -1.02 16 20 C -0.09 -2.02 9.60 22.58 0.22 -1.80 16 21 C -0.11 -3.31 5.46 -20.15 -0.11 -3.42 16 22 C 0.37 11.65 10.49 70.17 0.74 12.39 16 23 O -0.46 -15.65 17.18 -2.97 -0.05 -15.70 16 24 H 0.03 1.27 6.74 -2.39 -0.02 1.26 16 25 H 0.07 3.48 6.07 -2.39 -0.01 3.46 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.42 14.10 8.65 -96.75 -0.84 13.26 16 29 H 0.15 3.91 7.33 -2.91 -0.02 3.89 16 30 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.15 3.12 7.66 -2.91 -0.02 3.09 16 33 H 0.11 3.35 5.30 -2.91 -0.02 3.34 16 Total: -1.00 -65.89 297.58 0.36 -65.53 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.32 Total: 17.97 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 3.09 Total: -34.97 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -0.59 Total: -91.40 kcal Atomic # 8 Polarization: -93.11 SS G_CDS: -4.21 Total: -97.31 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 97.12 SS G_CDS: -0.28 Total: 96.84 kcal Total: -65.89 0.36 -65.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751057439.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.365 kcal (2) G-P(sol) polarization free energy of solvation -65.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds