Wall clock time and date at job start Tue Mar 31 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47288 * 2 1 4 4 C 1.50701 * 109.47034 * 119.99943 * 2 1 3 5 5 H 1.08000 * 120.00036 * 119.99546 * 4 2 1 6 6 C 1.37880 * 120.00126 * 300.00008 * 4 2 1 7 7 N 1.31512 * 119.99600 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99890 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46925 * 60.00272 * 8 6 4 10 10 H 1.48501 * 109.46592 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47318 * 300.00193 * 8 6 4 12 12 N 1.46499 * 109.47130 * 239.99694 * 2 1 3 13 13 S 1.65602 * 119.99800 * 95.73217 * 12 2 1 14 14 O 1.42101 * 106.40077 * 312.12883 * 13 12 2 15 15 O 1.42103 * 106.39991 * 179.20856 * 13 12 2 16 16 C 1.76202 * 107.21870 * 65.66927 * 13 12 2 17 17 C 1.37906 * 120.08690 * 243.66426 * 16 13 12 18 18 C 1.38377 * 120.17331 * 179.97438 * 17 16 13 19 19 C 1.38427 * 120.34909 * 359.97438 * 18 17 16 20 20 C 1.37865 * 120.17295 * 0.02562 * 19 18 17 21 21 C 1.39834 * 120.08769 * 63.64083 * 16 13 12 22 22 C 1.47163 * 120.17154 * 0.02562 * 21 16 13 23 23 O 1.21253 * 120.00163 * 184.05075 * 22 21 16 24 24 H 1.09002 * 109.47654 * 300.00375 * 1 2 3 25 25 H 1.09008 * 109.46957 * 60.00104 * 1 2 3 26 26 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99860 * 179.97438 * 7 6 4 28 28 H 0.96997 * 120.00175 * 275.73035 * 12 2 1 29 29 H 1.08003 * 119.91240 * 359.97353 * 17 16 13 30 30 H 1.07999 * 119.83107 * 179.70467 * 18 17 16 31 31 H 1.07996 * 119.91550 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.09111 * 180.02562 * 20 19 18 33 33 H 1.07999 * 120.00011 * 4.04943 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.8062 -1.1209 4.0082 10 1 1.8258 -0.4206 5.2204 11 1 1.8258 -2.5202 4.0077 12 7 2.0183 -0.6907 -1.1961 13 16 2.4293 0.1787 -2.5444 14 8 1.3596 1.0840 -2.7796 15 8 2.8759 -0.7643 -3.5091 16 6 3.8299 1.1618 -2.1241 17 6 3.7378 2.5377 -2.1374 18 6 4.8364 3.3115 -1.8072 19 6 6.0352 2.7124 -1.4607 20 6 6.1433 1.3381 -1.4426 21 6 5.0375 0.5489 -1.7757 22 6 5.1443 -0.9187 -1.7591 23 8 6.1695 -1.4479 -1.3861 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7088 1.1614 3.4844 28 1 2.1009 -1.6571 -1.1984 29 1 2.8058 3.0126 -2.4063 30 1 4.7595 4.3886 -1.8241 31 1 6.8884 3.3230 -1.2046 32 1 7.0791 0.8720 -1.1717 33 1 4.3094 -1.5246 -2.0790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751057449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:20 Heat of formation + Delta-G solvation = -79.487767 kcal Electronic energy + Delta-G solvation = -20638.864774 eV Core-core repulsion = 17371.118736 eV Total energy + Delta-G solvation = -3267.746038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78965 -38.07236 -36.89649 -35.58763 -35.49293 -32.32022 -31.65929 -31.17062 -28.40082 -25.27528 -25.00646 -23.25356 -21.12537 -21.03552 -19.22667 -17.86891 -17.36093 -16.84989 -16.30045 -15.85659 -15.21532 -14.81599 -14.63592 -14.40611 -14.25306 -14.06535 -13.65052 -12.73903 -12.66995 -12.52999 -12.27532 -11.82197 -11.79360 -11.73937 -11.53544 -11.22659 -11.01922 -10.71582 -10.65894 -10.35167 -10.18523 -9.77568 -9.41333 -9.29830 -9.04571 -8.70589 -8.41420 -6.19541 -4.28436 0.35647 0.80295 1.07632 2.41682 3.22892 3.27782 3.29402 3.39197 3.62182 4.06748 4.13524 4.30013 4.60771 4.76948 4.94212 5.11133 5.12598 5.19089 5.49441 5.58121 5.80672 5.95006 6.12629 6.20010 6.25020 6.73049 6.74687 6.98278 7.01730 7.29936 7.50215 7.60015 7.70124 7.96092 8.18093 8.74122 9.38694 10.85863 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.007599 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.757898 B = 3683.596843 C = 4166.149742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.275 3.725 3 H 0.042 0.958 4 C -0.530 4.530 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -1.100 6.100 13 S 2.682 3.318 14 O -0.954 6.954 15 O -0.977 6.977 16 C -0.621 4.621 17 C -0.031 4.031 18 C -0.110 4.110 19 C -0.085 4.085 20 C -0.083 4.083 21 C -0.088 4.088 22 C 0.372 3.628 23 O -0.443 6.443 24 H 0.092 0.908 25 H 0.026 0.974 26 H 0.033 0.967 27 H 0.266 0.734 28 H 0.411 0.589 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.213 3.615 -7.579 10.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.172 3.828 3 H 0.060 0.940 4 C -0.569 4.569 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.863 5.863 13 S 2.769 3.231 14 O -0.944 6.944 15 O -0.967 6.967 16 C -0.706 4.706 17 C -0.050 4.050 18 C -0.129 4.129 19 C -0.103 4.103 20 C -0.102 4.102 21 C -0.090 4.090 22 C 0.229 3.771 23 O -0.315 6.315 24 H 0.111 0.889 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.245 0.755 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.269 3.653 -8.030 10.822 hybrid contribution 0.848 -0.336 1.483 1.741 sum 7.117 3.317 -6.547 10.223 Atomic orbital electron populations 1.22229 0.97816 1.00097 1.01574 1.18568 0.91674 0.92080 0.80511 0.93997 1.21234 1.32330 1.13363 0.89975 0.91788 1.24894 0.94739 0.94954 0.99051 1.69861 1.35821 1.22448 1.24126 0.86553 0.79239 0.79809 0.81834 1.20180 1.21126 1.20027 1.55664 1.80526 1.18373 1.31701 1.02260 0.73839 0.73728 0.73239 1.93571 1.50856 1.65723 1.84220 1.93557 1.82831 1.61223 1.59067 1.31475 1.17103 1.08648 1.13384 1.21008 0.99515 0.91514 0.92963 1.21521 0.92894 1.00554 0.97918 1.21396 0.97968 0.94695 0.96260 1.21508 0.98501 0.93826 0.96335 1.20547 0.93456 0.96429 0.98560 1.24471 0.91138 0.88636 0.72849 1.90480 1.32155 1.75354 1.33515 0.88900 0.95536 0.94734 0.92443 0.75484 0.83291 0.84677 0.84860 0.84324 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.29 37.15 0.35 -3.27 16 2 C 0.28 6.30 2.76 -69.09 -0.19 6.11 16 3 H 0.04 1.02 7.89 -51.93 -0.41 0.61 16 4 C -0.53 -13.21 8.76 -34.44 -0.30 -13.52 16 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -23.50 11.32 55.43 0.63 -22.88 16 8 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -1.10 -20.75 4.94 -5.88 -0.03 -20.78 16 13 S 2.68 47.61 4.85 -107.50 -0.52 47.09 16 14 O -0.95 -18.83 16.30 -57.17 -0.93 -19.76 16 15 O -0.98 -17.64 16.01 -57.17 -0.92 -18.56 16 16 C -0.62 -10.35 5.83 -39.11 -0.23 -10.57 16 17 C -0.03 -0.46 9.54 -39.65 -0.38 -0.84 16 18 C -0.11 -1.35 10.04 -39.46 -0.40 -1.75 16 19 C -0.09 -1.02 10.03 -39.65 -0.40 -1.42 16 20 C -0.08 -1.19 9.60 -39.11 -0.38 -1.56 16 21 C -0.09 -1.45 5.87 -105.07 -0.62 -2.06 16 22 C 0.37 6.28 10.57 34.35 0.36 6.64 16 23 O -0.44 -8.14 17.17 5.58 0.10 -8.04 16 24 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 25 H 0.03 0.57 7.72 -51.92 -0.40 0.17 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.41 6.85 8.79 -34.47 -0.30 6.55 16 29 H 0.15 2.03 7.33 -52.48 -0.38 1.65 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.14 1.79 7.66 -52.49 -0.40 1.39 16 33 H 0.11 1.77 5.36 -52.49 -0.28 1.49 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -30.41 300.25 -7.75 -38.16 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.31 Total: 5.67 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.27 Total: -20.62 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.60 Total: -43.66 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -1.75 Total: -46.36 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 47.61 SS G_CDS: -0.52 Total: 47.09 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.41 -7.75 -38.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751057449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.327 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds