Wall clock time and date at job start Tue Mar 31 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48499 * 109.47026 * 269.99439 * 3 2 1 5 5 H 1.48496 * 109.47474 * 29.99475 * 3 2 1 6 6 H 1.48504 * 109.47117 * 150.00006 * 3 2 1 7 7 C 1.38949 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99737 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 O 1.45194 * 109.47090 * 179.97438 * 12 10 9 14 14 C 1.34768 * 116.99748 * 179.97438 * 13 12 10 15 15 O 1.21530 * 120.00214 * 0.02562 * 14 13 12 16 16 C 1.47228 * 119.99996 * 180.02562 * 14 13 12 17 17 C 1.36849 * 122.90798 * 0.02562 * 16 14 13 18 18 S 1.70559 * 110.74822 * 180.02562 * 17 16 14 19 19 C 1.75687 * 91.92929 * 0.02562 * 18 17 16 20 20 C 1.41448 * 125.12253 * 180.02562 * 19 18 17 21 21 O 1.21418 * 120.00013 * 179.97438 * 20 19 18 22 22 C 1.36374 * 109.75193 * 359.73434 * 19 18 17 23 23 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 24 24 H 0.96994 * 120.00506 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 26 26 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 27 27 H 1.08002 * 124.62807 * 0.03254 * 17 16 14 28 28 H 1.07999 * 120.00188 * 359.97438 * 20 19 18 29 29 H 1.07999 * 123.30217 * 180.24704 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 8 2.1875 -5.9665 -0.0005 14 6 1.6724 -7.2118 -0.0006 15 8 0.4676 -7.3711 -0.0006 16 6 2.5693 -8.3794 -0.0005 17 6 3.9333 -8.2691 0.0001 18 16 4.6641 -9.8102 -0.0007 19 6 3.1029 -10.6160 -0.0026 20 6 2.9104 -12.0173 -0.0035 21 8 1.7860 -12.4756 -0.0044 22 6 2.1047 -9.6869 0.0034 23 1 -0.4850 0.8400 -0.0004 24 1 0.3535 -2.3907 0.0005 25 1 0.6170 -4.9209 0.8897 26 1 0.6175 -4.9205 -0.8902 27 1 4.4734 -7.3339 0.0011 28 1 3.7634 -12.6796 -0.0034 29 1 1.0557 -9.9436 0.0074 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754563955.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:13 Heat of formation + Delta-G solvation = -118.901675 kcal Electronic energy + Delta-G solvation = -18380.806051 eV Core-core repulsion = 14975.517803 eV Total energy + Delta-G solvation = -3405.288248 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.53696 -39.56574 -38.27224 -37.27634 -36.02750 -34.04214 -31.44009 -31.05306 -28.48418 -26.30330 -25.17730 -24.11391 -20.99315 -19.64051 -19.58139 -18.39123 -18.08270 -17.68710 -16.39451 -16.35308 -15.89065 -15.72856 -15.08415 -14.87185 -14.55742 -14.12624 -14.04597 -13.42592 -13.21739 -13.03184 -12.86691 -12.28230 -12.08641 -11.65926 -11.63629 -11.16229 -10.59299 -10.48266 -10.46556 -10.34201 -10.30172 -9.64222 -9.37285 -9.11243 -8.57548 -8.12167 -6.53248 -3.95618 -0.19880 0.94895 1.09381 1.30312 2.34989 2.60944 2.98286 3.10791 3.21406 3.27165 3.69507 3.97863 4.10106 4.55868 4.68502 4.83502 4.88904 5.06283 5.11763 5.35001 5.48726 5.65315 5.65935 5.78146 6.01176 6.49957 7.01699 7.44394 7.75100 7.91239 8.44279 9.03270 9.35308 9.84714 10.63829 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.046520 B = 0.002923 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.743209 B = 9575.322514 C =10161.921066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.578 6.578 12 C 0.062 3.938 13 O -0.321 6.321 14 C 0.522 3.478 15 O -0.506 6.506 16 C -0.159 4.159 17 C -0.154 4.154 18 S 0.279 5.721 19 C -0.347 4.347 20 C 0.411 3.589 21 O -0.457 6.457 22 C 0.010 3.990 23 H 0.274 0.726 24 H 0.395 0.605 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.194 0.806 28 H 0.105 0.895 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.499 -19.069 0.018 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.223 3.777 11 O -0.463 6.463 12 C -0.016 4.016 13 O -0.236 6.236 14 C 0.364 3.636 15 O -0.396 6.396 16 C -0.173 4.173 17 C -0.294 4.294 18 S 0.547 5.453 19 C -0.464 4.464 20 C 0.270 3.730 21 O -0.332 6.332 22 C -0.021 4.021 23 H 0.084 0.916 24 H 0.229 0.771 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.211 0.789 28 H 0.121 0.879 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.741 -19.666 0.024 21.521 hybrid contribution -1.819 1.715 -0.011 2.500 sum 6.922 -17.951 0.013 19.239 Atomic orbital electron populations 1.69613 1.06017 1.28558 1.49431 1.25323 0.95690 0.99903 0.96796 0.85788 0.79214 0.80372 0.78510 1.20242 1.20780 1.19279 1.19726 0.93481 0.81731 1.48354 0.87591 1.41698 1.09413 1.04075 1.63604 1.19281 0.88308 0.84028 0.86103 1.90549 1.13404 1.86802 1.55509 1.22795 0.90780 0.84238 1.03750 1.86573 1.40088 1.13755 1.83146 1.20422 0.86671 0.83294 0.73168 1.90859 1.15724 1.86876 1.46129 1.18319 0.92216 0.92389 1.14388 1.26670 0.98268 1.05544 0.98884 1.82961 1.05433 0.93430 1.63461 1.24445 0.97958 1.01486 1.22534 1.21696 0.92867 0.87280 0.71198 1.90622 1.28287 1.78855 1.35482 1.20851 1.01567 0.89232 0.90462 0.91571 0.77106 0.89329 0.89333 0.78852 0.87860 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.80 13.05 55.50 0.72 -23.07 15 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 15 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 15 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 15 8 H 0.11 3.00 7.16 -52.48 -0.38 2.63 15 9 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 15 10 C 0.44 10.35 7.86 -10.98 -0.09 10.27 15 11 O -0.58 -15.63 16.08 -14.12 -0.23 -15.85 15 12 C 0.06 1.16 5.95 36.01 0.21 1.38 15 13 O -0.32 -5.84 9.37 -47.36 -0.44 -6.29 15 14 C 0.52 8.46 7.92 34.38 0.27 8.73 15 15 O -0.51 -9.12 16.48 -19.29 -0.32 -9.44 15 16 C -0.16 -2.01 5.81 -106.56 -0.62 -2.63 15 17 C -0.15 -1.53 10.57 30.23 0.32 -1.21 15 18 S 0.28 1.81 23.02 -107.50 -2.47 -0.66 15 19 C -0.35 -3.05 6.22 -39.03 -0.24 -3.29 15 20 C 0.41 3.31 11.46 31.95 0.37 3.68 15 21 O -0.46 -5.63 17.51 5.44 0.10 -5.53 15 22 C 0.01 0.12 9.47 -40.06 -0.38 -0.26 15 23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 24 H 0.40 9.36 7.90 -40.82 -0.32 9.04 15 25 H 0.09 1.52 8.14 -51.93 -0.42 1.09 15 26 H 0.09 1.52 8.14 -51.93 -0.42 1.09 15 27 H 0.19 1.89 8.00 -52.49 -0.42 1.47 15 28 H 0.11 0.39 8.06 -52.49 -0.42 -0.04 15 29 H 0.17 2.01 7.92 -52.49 -0.42 1.59 15 LS Contribution 295.73 15.07 4.46 4.46 Total: -1.00 -33.62 295.73 -5.60 -39.22 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -1.94 Total: 6.76 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -0.40 Total: 8.81 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.67 Total: -36.87 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.89 Total: -37.11 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.47 Total: -0.66 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.62 -5.60 -39.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754563955.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.682 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds