Wall clock time and date at job start Tue Mar 31 2020 06:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47178 * 2 1 4 4 C 1.50700 * 109.47055 * 119.99545 * 2 1 3 5 5 O 1.21218 * 120.00072 * 119.99948 * 4 2 1 6 6 O 1.34309 * 120.00154 * 300.00100 * 4 2 1 7 7 C 1.34924 * 117.00044 * 179.97438 * 6 4 2 8 8 H 1.07997 * 120.00257 * 359.97438 * 7 6 4 9 9 C 1.38748 * 119.99822 * 179.72786 * 7 6 4 10 10 N 1.31442 * 120.00231 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00017 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47517 * 89.99219 * 11 9 7 13 13 H 1.48504 * 109.47269 * 209.99544 * 11 9 7 14 14 H 1.48506 * 109.47099 * 329.99450 * 11 9 7 15 15 C 1.50693 * 109.47086 * 239.99395 * 2 1 3 16 16 C 1.38219 * 120.01963 * 300.00368 * 15 2 1 17 17 C 1.38216 * 120.03080 * 179.97438 * 16 15 2 18 18 C 1.38269 * 120.05108 * 0.02562 * 17 16 15 19 19 N 1.48004 * 119.98809 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99968 * 0.02562 * 19 18 17 21 21 O 1.21797 * 120.00375 * 179.97438 * 19 18 17 22 22 C 1.38181 * 120.02588 * 359.95379 * 18 17 16 23 23 C 1.38440 * 120.01274 * 119.72351 * 15 2 1 24 24 F 1.35105 * 120.02428 * 0.02778 * 23 15 2 25 25 H 1.08997 * 109.47508 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47141 * 300.00418 * 1 2 3 27 27 H 1.08999 * 109.47156 * 60.00374 * 1 2 3 28 28 H 0.97009 * 119.99891 * 180.02562 * 10 9 7 29 29 H 1.08005 * 119.97876 * 359.97122 * 16 15 2 30 30 H 1.08003 * 119.97942 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.01092 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7292 -1.6959 1.1194 6 8 1.7078 -0.2514 2.4504 7 6 2.1898 -0.9339 3.5098 8 1 2.8062 -1.8070 3.3546 9 6 1.8977 -0.5110 4.7986 10 7 1.1520 0.5548 4.9874 11 14 2.5656 -1.4554 6.2653 12 1 3.8888 -0.9018 6.6498 13 1 1.6246 -1.3270 7.4070 14 1 2.7143 -2.8885 5.9053 15 6 2.0323 -0.7105 -1.2303 16 6 1.6985 -2.0338 -1.4494 17 6 2.1587 -2.6855 -2.5780 18 6 2.9537 -2.0149 -3.4890 19 7 3.4462 -2.7144 -4.6969 20 8 3.1506 -3.8804 -4.8884 21 8 4.1462 -2.1238 -5.4998 22 6 3.2884 -0.6919 -3.2725 23 6 2.8235 -0.0364 -2.1448 24 9 3.1461 1.2586 -1.9344 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.9481 0.8506 5.8885 29 1 1.0779 -2.5587 -0.7381 30 1 1.8977 -3.7197 -2.7481 31 1 3.9091 -0.1682 -3.9845 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755058230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:47 Heat of formation + Delta-G solvation = -105.011651 kcal Electronic energy + Delta-G solvation = -21611.337448 eV Core-core repulsion = 17776.271435 eV Total energy + Delta-G solvation = -3835.066013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.28007 -42.30671 -40.06145 -38.82943 -36.69566 -35.68580 -34.24308 -32.30447 -31.20748 -30.61833 -26.71294 -25.81173 -24.16911 -23.38676 -22.33122 -19.95192 -19.68350 -18.89230 -17.91228 -17.67735 -17.15519 -16.64937 -16.37316 -16.10499 -15.85760 -14.98132 -14.59078 -14.48321 -14.29645 -13.64042 -13.13023 -12.95040 -12.84770 -12.42815 -12.05921 -11.85289 -11.69725 -11.58663 -11.40052 -11.26513 -11.21027 -11.14205 -10.55535 -10.52193 -9.97052 -9.60890 -9.38373 -9.12880 -8.72216 -6.55915 -4.24524 -0.37155 0.63004 1.15257 1.19887 2.92029 2.98126 3.11057 3.16051 3.30587 3.69136 3.77160 4.09782 4.16193 4.34867 4.43983 4.62843 4.88008 4.95803 5.14299 5.24512 5.34789 5.46139 5.57896 5.70348 5.77486 6.01001 6.05028 6.26912 6.28894 6.57325 7.24617 7.50797 7.78195 8.49446 8.92573 9.64386 10.61275 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028561 B = 0.003995 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.122936 B = 7006.697251 C = 7420.093271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 H 0.115 0.885 4 C 0.399 3.601 5 O -0.551 6.551 6 O -0.203 6.203 7 C -0.385 4.385 8 H 0.097 0.903 9 C 0.045 3.955 10 N -0.861 5.861 11 Si 0.944 3.056 12 H -0.272 1.272 13 H -0.277 1.277 14 H -0.266 1.266 15 C -0.035 4.035 16 C -0.053 4.053 17 C -0.063 4.063 18 C -0.025 4.025 19 N 0.032 4.968 20 O -0.156 6.156 21 O -0.162 6.162 22 C -0.096 4.096 23 C 0.111 3.889 24 F -0.119 7.119 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.271 0.729 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -1.157 -12.791 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 H 0.133 0.867 4 C 0.245 3.755 5 O -0.449 6.449 6 O -0.110 6.110 7 C -0.461 4.461 8 H 0.115 0.885 9 C -0.160 4.160 10 N -0.497 5.497 11 Si 0.768 3.232 12 H -0.198 1.198 13 H -0.202 1.202 14 H -0.190 1.190 15 C -0.036 4.036 16 C -0.072 4.072 17 C -0.082 4.082 18 C -0.108 4.108 19 N 0.552 4.448 20 O -0.373 6.373 21 O -0.377 6.377 22 C -0.116 4.116 23 C 0.091 3.909 24 F -0.097 7.097 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.585 -0.874 -12.022 12.158 hybrid contribution 0.673 -0.272 0.473 0.866 sum -0.912 -1.147 -11.550 11.642 Atomic orbital electron populations 1.21782 0.90694 1.03267 1.03775 1.19799 0.98676 1.00457 0.87864 0.86731 1.22564 0.82194 0.84929 0.85775 1.90593 1.39275 1.27682 1.87331 1.83848 1.63084 1.51581 1.12461 1.21256 1.32184 1.10996 0.81685 0.88527 1.25351 0.96190 0.96465 0.97991 1.69984 1.34376 1.22419 1.22916 0.85666 0.78639 0.79602 0.79285 1.19784 1.20189 1.19021 1.20066 0.94183 0.94840 0.94516 1.20966 0.98293 0.92641 0.95278 1.21089 0.93767 1.01661 0.91715 1.20694 1.06604 0.93643 0.89854 1.43504 0.98774 1.00888 1.01651 1.94542 1.61246 1.00169 1.81299 1.94538 1.34379 1.68103 1.40689 1.20729 1.00200 0.92761 0.97887 1.17006 0.98939 0.79996 0.94972 1.91569 1.90899 1.32714 1.94516 0.91803 0.89489 0.91707 0.91869 0.82388 0.82264 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.94 37.16 0.33 -1.53 16 2 C -0.05 -0.79 2.99 -92.93 -0.28 -1.07 16 3 H 0.11 1.78 7.13 -51.93 -0.37 1.41 16 4 C 0.40 8.90 7.07 36.01 0.25 9.16 16 5 O -0.55 -13.36 14.35 -19.06 -0.27 -13.63 16 6 O -0.20 -5.39 9.65 -20.71 -0.20 -5.59 16 7 C -0.39 -10.76 9.64 30.92 0.30 -10.46 16 8 H 0.10 2.72 6.86 -52.49 -0.36 2.36 16 9 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 10 N -0.86 -23.98 13.67 55.48 0.76 -23.22 16 11 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 15 C -0.03 -0.50 4.40 -104.56 -0.46 -0.96 16 16 C -0.05 -0.69 7.93 -39.60 -0.31 -1.01 16 17 C -0.06 -0.75 9.55 -39.58 -0.38 -1.13 16 18 C -0.02 -0.32 6.85 -79.96 -0.55 -0.87 16 19 N 0.03 0.44 4.45 33.95 0.15 0.60 16 20 O -0.16 -2.21 18.45 -29.46 -0.54 -2.75 16 21 O -0.16 -2.30 18.45 -29.46 -0.54 -2.85 16 22 C -0.10 -1.17 9.54 -39.51 -0.38 -1.54 16 23 C 0.11 1.48 7.25 -39.42 -0.29 1.19 16 24 F -0.12 -1.61 16.19 2.25 0.04 -1.57 16 25 H 0.06 0.81 7.39 -51.93 -0.38 0.42 16 26 H 0.09 1.30 8.11 -51.92 -0.42 0.88 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.16 1.98 7.52 -52.48 -0.39 1.59 16 30 H 0.16 1.56 7.61 -52.48 -0.40 1.16 16 31 H 0.16 1.69 7.61 -52.49 -0.40 1.29 16 LS Contribution 294.41 15.07 4.44 4.44 Total: -1.00 -30.96 294.41 -5.34 -36.30 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -2.29 Total: 0.04 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.85 Total: -7.10 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.91 Total: -22.62 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.56 Total: -24.82 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.96 -5.34 -36.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755058230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.716 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds