Wall clock time and date at job start Tue Mar 31 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47084 * 2 1 4 4 C 1.50693 * 109.47336 * 239.99385 * 2 1 3 5 5 O 1.21213 * 120.00493 * 240.00372 * 4 2 1 6 6 O 1.34310 * 119.99805 * 59.72626 * 4 2 1 7 7 C 1.34922 * 117.00349 * 180.27868 * 6 4 2 8 8 H 1.08003 * 119.99659 * 359.97438 * 7 6 4 9 9 C 1.38755 * 120.00272 * 179.97438 * 7 6 4 10 10 N 1.31441 * 120.00098 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99825 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47085 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46977 * 120.00291 * 11 9 7 14 14 H 1.48500 * 109.47251 * 240.00132 * 11 9 7 15 15 C 1.50708 * 109.47186 * 119.99446 * 2 1 3 16 16 C 1.38218 * 120.01045 * 59.71913 * 15 2 1 17 17 C 1.38221 * 120.02516 * 179.74425 * 16 15 2 18 18 C 1.38274 * 120.04987 * 0.56135 * 17 16 15 19 19 N 1.48004 * 119.98759 * 179.72316 * 18 17 16 20 20 O 1.21792 * 119.99834 * 179.97438 * 19 18 17 21 21 O 1.21807 * 119.99917 * 359.97089 * 19 18 17 22 22 C 1.38176 * 120.02393 * 359.69589 * 18 17 16 23 23 C 1.38437 * 120.01542 * 240.00144 * 15 2 1 24 24 F 1.35102 * 120.02298 * 359.95389 * 23 15 2 25 25 H 1.09003 * 109.47049 * 300.00335 * 1 2 3 26 26 H 1.08993 * 109.46915 * 59.99943 * 1 2 3 27 27 H 1.08996 * 109.46830 * 180.02562 * 1 2 3 28 28 H 0.96993 * 120.00374 * 179.97438 * 10 9 7 29 29 H 1.08008 * 119.98920 * 0.03293 * 16 15 2 30 30 H 1.08003 * 119.97827 * 180.25378 * 17 16 15 31 31 H 1.08002 * 120.01174 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7292 -1.6960 -1.1191 6 8 1.7034 -0.2550 -2.4502 7 6 2.1813 -0.9404 -3.5095 8 1 2.7989 -1.8127 -3.3542 9 6 1.8793 -0.5247 -4.7985 10 7 1.1282 0.5372 -4.9875 11 14 2.5417 -1.4734 -6.2650 12 1 3.3550 -2.6199 -5.7865 13 1 1.4082 -1.9775 -7.0812 14 1 3.3878 -0.5771 -7.0932 15 6 2.0324 -0.7103 1.2306 16 6 1.6938 -2.0319 1.4526 17 6 2.1587 -2.6852 2.5784 18 6 2.9534 -2.0143 3.4897 19 7 3.4454 -2.7134 4.6979 20 8 4.1457 -2.1228 5.5004 21 8 3.1499 -3.8795 4.8895 22 6 3.2887 -0.6916 3.2725 23 6 2.8283 -0.0377 2.1420 24 9 3.1559 1.2554 1.9284 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.9174 0.8281 -5.8885 29 1 1.0696 -2.5557 0.7437 30 1 1.8971 -3.7191 2.7491 31 1 3.9097 -0.1678 3.9842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755058231.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:50 Heat of formation + Delta-G solvation = -121.556617 kcal Electronic energy + Delta-G solvation = -21612.637290 eV Core-core repulsion = 17776.853833 eV Total energy + Delta-G solvation = -3835.783456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.33878 -43.37864 -41.53413 -40.28042 -37.78397 -37.46097 -35.64637 -34.31719 -32.22432 -31.75164 -27.84323 -27.69664 -25.52498 -24.46280 -23.59979 -21.50069 -20.74214 -19.99191 -19.89733 -18.75175 -18.62858 -17.74372 -17.65825 -17.40490 -16.98639 -16.67931 -16.35207 -16.07967 -15.40786 -14.79528 -14.54792 -14.29397 -13.92536 -13.68989 -13.58146 -13.27008 -13.10157 -12.85384 -12.74697 -12.50341 -12.36747 -12.35006 -12.29319 -12.17043 -11.97487 -11.05147 -10.72374 -10.68340 -10.30052 -8.56980 -6.36454 -1.44819 -0.37226 0.06123 0.14336 1.24682 1.34205 1.51343 1.57423 1.84036 2.11861 2.61067 2.70460 2.94919 3.01475 3.16455 3.37783 3.58005 3.86260 3.99679 4.03711 4.25041 4.45004 4.53981 4.61468 4.67109 4.78592 4.94249 4.97937 5.14857 5.19318 5.27872 5.79311 6.39996 6.58562 6.88782 7.69650 8.63181 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.003995 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.408746 B = 7006.882607 C = 7420.323074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.040 4.040 3 H 0.121 0.879 4 C 0.402 3.598 5 O -0.571 6.571 6 O -0.234 6.234 7 C -0.419 4.419 8 H 0.083 0.917 9 C 0.000 4.000 10 N -0.898 5.898 11 Si 1.013 2.987 12 H -0.265 1.265 13 H -0.260 1.260 14 H -0.263 1.263 15 C -0.048 4.048 16 C -0.057 4.057 17 C -0.051 4.051 18 C -0.029 4.029 19 N 0.032 4.968 20 O -0.169 6.169 21 O -0.161 6.161 22 C -0.086 4.086 23 C 0.109 3.891 24 F -0.121 7.121 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.279 0.721 29 H 0.161 0.839 30 H 0.181 0.819 31 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -1.605 13.434 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.059 4.059 3 H 0.139 0.861 4 C 0.249 3.751 5 O -0.469 6.469 6 O -0.142 6.142 7 C -0.495 4.495 8 H 0.101 0.899 9 C -0.201 4.201 10 N -0.535 5.535 11 Si 0.832 3.168 12 H -0.189 1.189 13 H -0.184 1.184 14 H -0.187 1.187 15 C -0.050 4.050 16 C -0.076 4.076 17 C -0.070 4.070 18 C -0.112 4.112 19 N 0.551 4.449 20 O -0.383 6.383 21 O -0.377 6.377 22 C -0.105 4.105 23 C 0.089 3.911 24 F -0.099 7.099 25 H 0.120 0.880 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.179 0.821 30 H 0.199 0.801 31 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.563 -1.319 12.700 12.864 hybrid contribution 0.682 -0.142 -0.522 0.871 sum -0.881 -1.461 12.178 12.297 Atomic orbital electron populations 1.21791 0.88510 1.04097 1.04614 1.19833 1.00459 1.00060 0.85541 0.86081 1.23784 0.80583 0.84447 0.86266 1.90560 1.39891 1.28738 1.87729 1.83874 1.64251 1.52387 1.13652 1.21444 1.33369 1.11621 0.83045 0.89899 1.26449 0.95934 0.97300 1.00400 1.70060 1.35269 1.24131 1.24072 0.84621 0.78554 0.77801 0.75777 1.18913 1.18395 1.18749 1.19998 0.95319 0.95529 0.94125 1.21025 0.98518 0.92219 0.95802 1.21272 0.92538 1.02461 0.90692 1.20788 1.06908 0.93881 0.89599 1.43614 0.98641 1.00860 1.01814 1.94537 1.34619 1.68079 1.41098 1.94542 1.61331 1.00365 1.81462 1.20859 0.99588 0.92566 0.97498 1.16972 0.98919 0.80051 0.95177 1.91564 1.90820 1.33034 1.94514 0.88023 0.91395 0.91058 0.91156 0.82119 0.80126 0.79978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.93 71.98 0.64 -2.80 16 2 C -0.04 -1.27 2.99 -12.29 -0.04 -1.30 16 3 H 0.12 3.70 7.13 -2.38 -0.02 3.68 16 4 C 0.40 18.19 7.08 71.23 0.50 18.69 16 5 O -0.57 -28.07 14.37 20.77 0.30 -27.77 16 6 O -0.23 -12.77 9.64 14.85 0.14 -12.63 16 7 C -0.42 -24.06 9.65 67.94 0.66 -23.41 16 8 H 0.08 4.84 6.86 -2.91 -0.02 4.82 16 9 C 0.00 0.01 5.49 84.87 0.47 0.47 16 10 N -0.90 -50.70 13.67 21.62 0.30 -50.40 16 11 Si 1.01 41.63 29.55 68.60 2.03 43.65 16 12 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 13 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 14 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 15 C -0.05 -1.32 4.40 -19.82 -0.09 -1.41 16 16 C -0.06 -1.39 7.94 22.26 0.18 -1.22 16 17 C -0.05 -1.09 9.55 22.27 0.21 -0.87 16 18 C -0.03 -0.67 6.85 36.37 0.25 -0.42 16 19 N 0.03 0.83 4.45 -46.49 -0.21 0.62 16 20 O -0.17 -4.49 18.45 18.90 0.35 -4.14 16 21 O -0.16 -4.24 18.45 18.88 0.35 -3.89 16 22 C -0.09 -1.89 9.53 22.31 0.21 -1.67 16 23 C 0.11 2.71 7.25 22.37 0.16 2.87 16 24 F -0.12 -3.09 16.19 44.97 0.73 -2.37 16 25 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 27 H 0.07 1.72 7.37 -2.39 -0.02 1.70 16 28 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.16 3.82 7.52 -2.91 -0.02 3.80 16 30 H 0.18 3.05 7.61 -2.91 -0.02 3.03 16 31 H 0.18 3.30 7.61 -2.91 -0.02 3.28 16 Total: -1.00 -67.40 294.40 8.33 -59.07 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.19 Total: 8.90 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 3.16 Total: -11.05 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.09 Total: -49.78 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: 1.14 Total: -48.42 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.73 Total: -2.37 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -67.40 8.33 -59.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755058231.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.489 kcal (2) G-P(sol) polarization free energy of solvation -67.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds