Wall clock time and date at job start Tue Mar 31 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99339 * 2 1 4 4 H 1.48501 * 109.47163 * 240.00008 * 3 2 1 5 5 H 1.48493 * 109.47477 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46721 * 120.00664 * 3 2 1 7 7 C 1.37873 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00123 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47070 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.34720 * 117.00289 * 179.97438 * 11 10 9 13 13 O 1.21489 * 120.00041 * 359.97438 * 12 11 10 14 14 C 1.47594 * 120.00227 * 180.02562 * 12 11 10 15 15 C 1.39732 * 120.12353 * 304.80982 * 14 12 11 16 16 C 1.37796 * 119.87456 * 180.22907 * 15 14 12 17 17 C 1.38686 * 120.12268 * 359.49518 * 16 15 14 18 18 F 1.35099 * 119.87165 * 180.23304 * 17 16 15 19 19 C 1.38646 * 120.25199 * 0.25254 * 17 16 15 20 20 C 1.37836 * 120.12223 * 0.02562 * 19 17 16 21 21 N 1.48022 * 120.06091 * 179.97438 * 20 19 17 22 22 O 1.21804 * 120.00054 * 353.46613 * 21 20 19 23 23 O 1.21802 * 119.99975 * 173.46997 * 21 20 19 24 24 H 0.97000 * 120.00339 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47500 * 60.00477 * 9 7 2 26 26 H 1.09001 * 109.47039 * 299.99893 * 9 7 2 27 27 H 1.08997 * 109.47386 * 59.99989 * 10 9 7 28 28 H 1.09001 * 109.46715 * 299.99618 * 10 9 7 29 29 H 1.08005 * 120.05802 * 359.97438 * 15 14 12 30 30 H 1.08004 * 119.93475 * 179.76872 * 16 15 14 31 31 H 1.08005 * 119.93615 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 8 1.5196 -4.9195 0.0001 12 6 2.2533 -6.0494 -0.0004 13 8 3.4666 -5.9857 -0.0017 14 6 1.5834 -7.3645 -0.0004 15 6 0.6507 -7.6763 0.9922 16 6 0.0317 -8.9075 0.9900 17 6 0.3253 -9.8323 -0.0009 18 9 -0.2881 -11.0361 -0.0008 19 6 1.2460 -9.5263 -0.9913 20 6 1.8754 -8.3001 -0.9957 21 7 2.8586 -7.9751 -2.0534 22 8 3.2012 -8.8304 -2.8501 23 8 3.3252 -6.8524 -2.1270 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6249 -2.5570 0.8897 27 1 2.8721 -3.6042 0.8894 28 1 2.8720 -3.6042 -0.8906 29 1 0.4184 -6.9553 1.7620 30 1 -0.6866 -9.1509 1.7589 31 1 1.4705 -10.2502 -1.7608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758114591.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:50 Heat of formation + Delta-G solvation = -123.756461 kcal Electronic energy + Delta-G solvation = -21334.411847 eV Core-core repulsion = 17498.532998 eV Total energy + Delta-G solvation = -3835.878849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.33326 -43.56037 -41.68703 -40.09418 -38.02524 -37.59572 -35.46654 -33.46205 -32.98830 -32.05043 -28.30946 -27.18996 -25.44826 -24.20072 -23.13378 -22.40581 -20.76704 -19.97094 -19.46019 -18.82243 -18.44894 -18.17775 -17.85853 -17.80351 -17.13468 -16.97158 -16.55598 -15.87625 -15.23146 -15.08045 -14.66046 -14.38731 -14.22416 -14.01090 -13.26018 -13.20494 -13.07720 -12.87870 -12.65950 -12.60367 -12.45721 -12.33480 -12.01878 -11.61518 -11.51437 -11.43789 -11.01809 -10.60453 -10.46922 -8.26981 -6.39852 -1.68719 -0.73072 -0.04741 0.01361 0.89055 1.33861 1.43799 1.45481 1.54175 1.85520 2.39507 2.54323 2.94728 3.07736 3.19240 3.35513 3.42850 3.66914 4.06455 4.19811 4.23962 4.35028 4.49951 4.59296 4.67002 4.87250 5.11680 5.16482 5.43673 5.45793 5.71898 6.05955 6.20488 6.45617 6.72908 7.29800 8.85267 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026597 B = 0.003636 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.496271 B = 7697.890282 C = 8409.449270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.091 3.909 11 O -0.350 6.350 12 C 0.497 3.503 13 O -0.502 6.502 14 C -0.076 4.076 15 C -0.032 4.032 16 C -0.072 4.072 17 C 0.141 3.859 18 F -0.108 7.108 19 C -0.086 4.086 20 C 0.003 3.997 21 N 0.019 4.981 22 O -0.116 6.116 23 O -0.205 6.205 24 H 0.268 0.732 25 H 0.004 0.996 26 H 0.014 0.986 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.191 0.809 30 H 0.213 0.787 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 -22.821 3.499 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.019 3.981 11 O -0.267 6.267 12 C 0.339 3.661 13 O -0.390 6.390 14 C -0.078 4.078 15 C -0.050 4.050 16 C -0.090 4.090 17 C 0.120 3.880 18 F -0.086 7.086 19 C -0.106 4.106 20 C -0.081 4.081 21 N 0.537 4.463 22 O -0.345 6.345 23 O -0.407 6.407 24 H 0.077 0.923 25 H 0.023 0.977 26 H 0.033 0.967 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.208 0.792 30 H 0.230 0.770 31 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.407 -22.714 4.046 23.321 hybrid contribution 0.857 0.992 -0.693 1.483 sum -2.550 -21.722 3.353 22.126 Atomic orbital electron populations 1.70073 1.07712 1.28349 1.50282 1.25911 0.95829 1.03238 0.94013 0.85406 0.78237 0.77576 0.79289 1.19351 1.20392 1.18923 1.21338 0.93734 0.91229 1.52692 0.91764 1.18976 0.94250 0.90241 0.96917 1.23296 0.95247 0.78207 1.01389 1.86579 1.41741 1.15344 1.82994 1.21137 0.85843 0.85763 0.73346 1.90882 1.15668 1.88084 1.44341 1.19162 1.00184 0.90553 0.97928 1.21642 0.89303 0.98117 0.95961 1.22042 0.98813 0.90243 0.97906 1.17423 0.92874 0.82706 0.94979 1.91653 1.80192 1.40946 1.95815 1.21024 0.94484 0.94232 1.00841 1.20773 0.97747 0.97809 0.91723 1.43831 1.00633 1.00572 1.01226 1.94452 1.61916 1.42533 1.35579 1.94767 1.58781 1.07809 1.79341 0.92301 0.97730 0.96729 0.91341 0.92483 0.79167 0.77024 0.79125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.76 13.29 21.45 0.28 -54.48 16 2 C 0.01 0.53 5.46 84.65 0.46 0.99 16 3 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.77 5.35 29.85 0.16 1.93 16 10 C 0.09 4.14 5.41 71.98 0.39 4.53 16 11 O -0.35 -13.96 10.23 -56.30 -0.58 -14.54 16 12 C 0.50 17.87 5.97 70.29 0.42 18.29 16 13 O -0.50 -21.15 14.56 27.53 0.40 -20.75 16 14 C -0.08 -1.91 5.76 -20.10 -0.12 -2.02 16 15 C -0.03 -0.45 9.78 22.53 0.22 -0.23 16 16 C -0.07 -0.51 10.01 22.27 0.22 -0.29 16 17 C 0.14 1.42 7.31 22.47 0.16 1.58 16 18 F -0.11 -1.01 17.26 44.97 0.78 -0.24 16 19 C -0.09 -1.30 9.52 22.27 0.21 -1.08 16 20 C 0.00 0.07 6.85 36.63 0.25 0.32 16 21 N 0.02 0.61 4.45 -45.85 -0.20 0.41 16 22 O -0.12 -3.40 18.46 18.88 0.35 -3.05 16 23 O -0.21 -8.27 15.00 26.17 0.39 -7.88 16 24 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 25 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.21 -0.32 8.06 -2.91 -0.02 -0.34 16 31 H 0.19 2.13 7.62 -2.91 -0.02 2.11 16 Total: -1.00 -74.41 297.01 7.25 -67.16 By element: Atomic # 1 Polarization: -6.34 SS G_CDS: 1.18 Total: -5.16 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 2.62 Total: -7.00 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.08 Total: -54.07 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: 0.57 Total: -46.21 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.78 Total: -0.24 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -74.41 7.25 -67.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758114591.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.598 kcal (2) G-P(sol) polarization free energy of solvation -74.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds