Wall clock time and date at job start Tue Mar 31 2020 05:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46811 * 114.56361 * 3 2 1 5 5 C 1.36811 * 119.99562 * 97.48089 * 4 3 2 6 6 H 1.08000 * 119.99455 * 153.56898 * 5 4 3 7 7 C 1.39084 * 119.99747 * 333.56632 * 5 4 3 8 8 N 1.31331 * 120.00699 * 349.15996 * 7 5 4 9 9 Si 1.86810 * 119.99649 * 169.16268 * 7 5 4 10 10 H 1.48501 * 109.46949 * 90.00078 * 9 7 5 11 11 H 1.48501 * 109.47154 * 210.00001 * 9 7 5 12 12 H 1.48497 * 109.46705 * 329.99711 * 9 7 5 13 13 C 1.34769 * 120.00260 * 277.47626 * 4 3 2 14 14 O 1.21588 * 120.00309 * 184.95717 * 13 4 3 15 15 C 1.47840 * 119.99772 * 4.95368 * 13 4 3 16 16 N 1.32901 * 119.75260 * 6.32862 * 15 13 4 17 17 C 1.31537 * 121.63491 * 179.97438 * 16 15 13 18 18 Cl 1.73602 * 119.52114 * 180.02562 * 17 16 15 19 19 C 1.38823 * 120.95411 * 0.02562 * 17 16 15 20 20 C 1.38443 * 119.39870 * 359.71521 * 19 17 16 21 21 C 1.38938 * 118.49139 * 0.54813 * 20 19 17 22 22 F 1.35103 * 120.48817 * 179.72903 * 21 20 19 23 23 H 1.08999 * 109.47363 * 354.56516 * 3 2 1 24 24 H 1.09002 * 109.46767 * 234.56548 * 3 2 1 25 25 H 0.96999 * 120.00608 * 180.02562 * 8 7 5 26 26 H 1.07998 * 120.30286 * 179.97438 * 19 17 16 27 27 H 1.08002 * 120.74910 * 180.30432 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5751 -1.2563 5 6 3.4689 1.8904 -1.3076 6 1 4.1956 2.2175 -2.0365 7 6 2.9119 2.8062 -0.4213 8 7 1.8817 2.4624 0.3172 9 14 3.6291 4.5254 -0.2814 10 1 2.9507 5.4250 -1.2488 11 1 3.4239 5.0366 1.0977 12 1 5.0827 4.4812 -0.5817 13 6 3.1778 -0.1922 -2.3612 14 8 3.6665 0.2582 -3.3794 15 6 2.6733 -1.5816 -2.3353 16 7 2.0274 -2.0288 -1.2634 17 6 1.5626 -3.2578 -1.2008 18 17 0.7263 -3.7844 0.2264 19 6 1.7312 -4.1397 -2.2596 20 6 2.3934 -3.7152 -3.3988 21 6 2.8794 -2.4141 -3.4369 22 9 3.5365 -1.9595 -4.5263 23 1 2.9719 -1.0222 0.0973 24 1 2.9711 0.5967 0.8374 25 1 1.4930 3.1012 0.9350 26 1 1.3456 -5.1465 -2.1968 27 1 2.5324 -4.3815 -4.2373 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758938731.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:56 Heat of formation + Delta-G solvation = -8.053615 kcal Electronic energy + Delta-G solvation = -19828.761490 eV Core-core repulsion = 16335.068714 eV Total energy + Delta-G solvation = -3493.692776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.026 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.00743 -41.70812 -39.99835 -37.70096 -37.55623 -36.07376 -34.30840 -33.39497 -31.86924 -29.19891 -27.44526 -25.46140 -24.51837 -21.96640 -19.76343 -19.12324 -18.74410 -18.26086 -18.08033 -17.24446 -16.96908 -16.48783 -15.92550 -15.45676 -15.24779 -14.97083 -14.88851 -14.84505 -14.18698 -13.79618 -13.69610 -13.31353 -13.08491 -12.89462 -12.62217 -12.44318 -12.36299 -12.13007 -12.04829 -11.28424 -11.10990 -11.08305 -10.41772 -10.05700 -9.88744 -8.47825 -6.12855 -0.67467 -0.21792 0.64853 1.37738 1.45669 1.58793 1.70707 2.01011 2.31031 2.38590 2.59244 2.70562 2.95706 3.00852 3.27672 3.56864 3.69911 3.78824 3.95009 4.29217 4.59256 4.66356 4.76009 4.86276 5.27226 5.36272 5.91201 6.18827 6.35525 6.94912 7.13973 7.23828 7.73358 8.53572 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.007253 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.916276 B = 3859.488092 C = 5083.417294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.290 3.710 3 C 0.237 3.763 4 N -0.419 5.419 5 C -0.340 4.340 6 H 0.092 0.908 7 C 0.007 3.993 8 N -0.884 5.884 9 Si 1.000 3.000 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.259 1.259 13 C 0.475 3.525 14 O -0.599 6.599 15 C 0.062 3.938 16 N -0.456 5.456 17 C 0.147 3.853 18 Cl -0.015 7.015 19 C -0.092 4.092 20 C -0.077 4.077 21 C 0.085 3.915 22 F -0.118 7.118 23 H 0.124 0.876 24 H 0.112 0.888 25 H 0.280 0.720 26 H 0.205 0.795 27 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -15.203 -0.073 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.028 4.028 3 C 0.111 3.889 4 N -0.135 5.135 5 C -0.468 4.468 6 H 0.110 0.890 7 C -0.197 4.197 8 N -0.521 5.521 9 Si 0.823 3.177 10 H -0.208 1.208 11 H -0.192 1.192 12 H -0.183 1.183 13 C 0.264 3.736 14 O -0.484 6.484 15 C -0.076 4.076 16 N -0.170 5.170 17 C -0.020 4.020 18 Cl 0.013 6.987 19 C -0.113 4.113 20 C -0.103 4.103 21 C 0.062 3.938 22 F -0.096 7.096 23 H 0.141 0.859 24 H 0.129 0.871 25 H 0.090 0.910 26 H 0.222 0.778 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.093 -14.303 0.398 14.308 hybrid contribution 0.608 0.865 -0.508 1.173 sum 0.515 -13.438 -0.110 13.448 Atomic orbital electron populations 1.80794 1.14325 1.14793 1.09788 1.28870 0.95014 0.87601 0.91278 1.19019 0.81574 0.99964 0.88343 1.43628 1.52979 1.09808 1.07116 1.19838 1.23664 0.83007 1.20251 0.89040 1.26244 0.94487 1.03663 0.95316 1.69817 1.19947 1.38047 1.24254 0.84825 0.79010 0.76014 0.77866 1.20834 1.19213 1.18323 1.18069 0.86011 0.85677 0.83841 1.90660 1.50916 1.74491 1.32383 1.21269 1.00224 0.95218 0.90875 1.67425 1.08929 1.15946 1.24701 1.22239 0.97431 0.90837 0.91537 1.98422 1.74920 1.87793 1.37523 1.22339 0.97037 1.02374 0.89534 1.22091 0.95051 0.92315 1.00834 1.18947 0.96320 0.94354 0.84187 1.91575 1.77732 1.89548 1.50783 0.85917 0.87059 0.90972 0.77762 0.77379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.74 18.54 20.01 0.37 -25.37 15 2 C 0.29 13.69 11.25 89.44 1.01 14.70 15 3 C 0.24 10.42 4.75 84.57 0.40 10.82 15 4 N -0.42 -21.13 2.59 -648.72 -1.68 -22.81 15 5 C -0.34 -18.15 9.22 84.12 0.78 -17.37 15 6 H 0.09 5.11 7.44 -2.91 -0.02 5.09 15 7 C 0.01 0.34 5.06 84.97 0.43 0.77 15 8 N -0.88 -45.18 9.29 21.69 0.20 -44.98 15 9 Si 1.00 40.16 29.57 68.60 2.03 42.19 15 10 H -0.28 -11.62 7.11 99.48 0.71 -10.92 15 11 H -0.27 -10.14 7.11 99.48 0.71 -9.43 15 12 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 13 C 0.47 23.75 7.52 86.79 0.65 24.40 15 14 O -0.60 -33.63 15.06 -3.99 -0.06 -33.69 15 15 C 0.06 2.47 6.55 41.86 0.27 2.74 15 16 N -0.46 -16.28 4.63 -175.78 -0.81 -17.10 15 17 C 0.15 3.98 7.27 84.88 0.62 4.60 15 18 Cl -0.02 -0.38 29.10 -2.72 -0.08 -0.46 15 19 C -0.09 -1.65 9.88 22.46 0.22 -1.43 15 20 C -0.08 -1.50 10.16 22.49 0.23 -1.27 15 21 C 0.09 2.77 7.31 22.77 0.17 2.94 15 22 F -0.12 -4.37 15.57 44.97 0.70 -3.67 15 23 H 0.12 4.69 5.90 -2.39 -0.01 4.68 15 24 H 0.11 4.91 6.67 -2.39 -0.02 4.89 15 25 H 0.28 13.67 8.31 -92.71 -0.77 12.90 15 26 H 0.21 1.64 8.06 -2.91 -0.02 1.62 15 27 H 0.21 2.01 8.06 -2.91 -0.02 1.98 15 Total: -1.00 -70.22 269.06 6.70 -63.52 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 1.25 Total: 1.45 kcal Atomic # 6 Polarization: 36.13 SS G_CDS: 4.77 Total: 40.90 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -1.92 Total: -110.25 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.06 Total: -33.69 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.70 Total: -3.67 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -70.22 6.70 -63.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758938731.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.468 kcal (2) G-P(sol) polarization free energy of solvation -70.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds