Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21287 * 120.00107 * 2 1 4 4 N 1.34782 * 120.00384 * 179.97438 * 2 1 3 5 5 C 1.40002 * 120.00035 * 185.27562 * 4 2 1 6 6 C 1.39038 * 119.97201 * 213.26595 * 5 4 2 7 7 C 1.38174 * 120.26320 * 180.02562 * 6 5 4 8 8 C 1.38159 * 120.21586 * 359.97438 * 7 6 5 9 9 Cl 1.73601 * 120.02556 * 179.97438 * 8 7 6 10 10 C 1.39791 * 119.95179 * 0.02562 * 8 7 6 11 11 C 1.47604 * 120.13387 * 179.97438 * 10 8 7 12 12 O 1.21516 * 119.99736 * 359.72056 * 11 10 8 13 13 O 1.34737 * 119.99951 * 179.97438 * 11 10 8 14 14 C 1.34852 * 116.99967 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00042 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00020 * 180.02562 * 14 13 11 17 17 N 1.31417 * 120.00013 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47199 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46979 * 120.00251 * 18 16 14 21 21 H 1.48502 * 109.46903 * 239.99963 * 18 16 14 22 22 C 1.38515 * 119.97726 * 33.51999 * 5 4 2 23 23 H 1.09005 * 109.46675 * 239.99938 * 1 2 3 24 24 H 1.08994 * 109.47109 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46929 * 120.00779 * 1 2 3 26 26 H 0.96999 * 119.99300 * 5.27381 * 4 2 1 27 27 H 1.07994 * 119.86822 * 0.02562 * 6 5 4 28 28 H 1.07995 * 119.89359 * 179.97438 * 7 6 5 29 29 H 0.97001 * 119.99829 * 179.97438 * 17 16 14 30 30 H 1.07996 * 120.11111 * 0.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.5766 -1.1696 0.1120 6 6 4.3235 -2.1468 -0.5364 7 6 5.7011 -2.1552 -0.4301 8 6 6.3463 -1.1919 0.3213 9 17 8.0773 -1.2075 0.4521 10 6 5.6042 -0.2052 0.9770 11 6 6.2894 0.8255 1.7812 12 8 7.5006 0.8145 1.8784 13 8 5.5715 1.7755 2.4117 14 6 6.2590 2.6872 3.1290 15 1 7.3366 2.6341 3.1790 16 6 5.5817 3.6934 3.8042 17 7 4.2705 3.7577 3.7438 18 14 6.5341 4.9559 4.7985 19 1 7.9873 4.6645 4.7064 20 1 6.2659 6.3139 4.2609 21 1 6.1060 4.8923 6.2190 22 6 4.2118 -0.2017 0.8725 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 1.6990 -2.0055 -0.0763 27 1 3.8249 -2.9022 -1.1255 28 1 6.2753 -2.9172 -0.9359 29 1 3.7972 4.4606 4.2159 30 1 3.6323 0.5550 1.3802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768098812.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = -110.962312 kcal Electronic energy + Delta-G solvation = -19475.059429 eV Core-core repulsion = 16068.071752 eV Total energy + Delta-G solvation = -3406.987678 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74472 -40.92907 -39.46197 -37.53680 -37.09673 -35.71798 -34.37388 -32.53794 -31.76338 -29.35906 -27.77935 -25.33051 -24.09020 -22.24221 -21.43221 -19.90228 -19.48134 -17.96052 -17.82595 -17.70071 -16.75589 -16.58286 -16.48315 -16.21572 -15.73874 -15.19363 -14.76578 -14.49356 -14.44164 -13.69008 -13.61502 -13.24034 -13.22777 -13.10207 -12.97691 -12.60478 -12.40435 -12.28416 -12.13451 -12.03211 -11.31600 -10.99367 -10.74237 -10.65134 -10.18734 -9.19455 -8.58538 -6.36335 -0.43337 0.03611 1.15251 1.29791 1.31147 1.48368 1.50119 1.81325 2.02756 2.09021 2.60036 2.64951 2.98647 3.62845 3.79853 3.96117 4.11392 4.19860 4.46945 4.55258 4.69332 4.74970 4.89637 5.00991 5.07188 5.12448 5.22507 5.25609 5.73453 5.77620 6.43156 6.57486 6.84457 7.18152 7.71074 8.62396 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.006966 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.752822 B = 4018.357769 C = 6131.614328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.493 3.507 3 O -0.579 6.579 4 N -0.655 5.655 5 C 0.138 3.862 6 C -0.082 4.082 7 C -0.087 4.087 8 C -0.021 4.021 9 Cl -0.050 7.050 10 C -0.104 4.104 11 C 0.422 3.578 12 O -0.549 6.549 13 O -0.237 6.237 14 C -0.418 4.418 15 H 0.085 0.915 16 C -0.007 4.007 17 N -0.899 5.899 18 Si 1.023 2.977 19 H -0.263 1.263 20 H -0.259 1.259 21 H -0.256 1.256 22 C -0.087 4.087 23 H 0.117 0.883 24 H 0.083 0.917 25 H 0.130 0.870 26 H 0.438 0.562 27 H 0.201 0.799 28 H 0.187 0.813 29 H 0.279 0.721 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 -16.254 -9.900 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.283 3.717 3 O -0.457 6.457 4 N -0.304 5.304 5 C 0.043 3.957 6 C -0.102 4.102 7 C -0.106 4.106 8 C -0.049 4.049 9 Cl -0.021 7.021 10 C -0.107 4.107 11 C 0.271 3.729 12 O -0.447 6.447 13 O -0.145 6.145 14 C -0.494 4.494 15 H 0.103 0.897 16 C -0.207 4.207 17 N -0.536 5.536 18 Si 0.841 3.159 19 H -0.186 1.186 20 H -0.183 1.183 21 H -0.180 1.180 22 C -0.108 4.108 23 H 0.136 0.864 24 H 0.102 0.898 25 H 0.148 0.852 26 H 0.280 0.720 27 H 0.218 0.782 28 H 0.204 0.796 29 H 0.089 0.911 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.467 -15.368 -9.766 20.081 hybrid contribution 0.562 0.798 0.740 1.225 sum -7.905 -14.571 -9.025 18.875 Atomic orbital electron populations 1.21945 0.85964 1.06367 1.07408 1.22218 0.93198 0.82503 0.73755 1.90895 1.72058 1.33727 1.49008 1.43469 1.03387 1.10954 1.72577 1.17786 0.85043 0.96568 0.96293 1.21521 0.92325 0.98888 0.97493 1.21267 0.94742 0.97236 0.97345 1.21240 0.85800 0.97087 1.00753 1.98376 1.08994 1.97886 1.96825 1.18989 0.93759 0.96183 1.01738 1.21561 0.86289 0.83433 0.81632 1.90656 1.15268 1.75387 1.63381 1.83950 1.40343 1.35286 1.54961 1.21589 0.92469 1.06853 1.28457 0.89716 1.26699 0.97091 0.99244 0.97712 1.70124 1.08479 1.33786 1.41172 0.84507 0.77712 0.76169 0.77495 1.18649 1.18345 1.17984 1.21265 0.92412 0.99566 0.97524 0.86431 0.89831 0.85154 0.71992 0.78187 0.79621 0.91128 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.32 71.24 0.74 -1.40 16 2 C 0.49 12.99 7.67 87.66 0.67 13.66 16 3 O -0.58 -24.54 14.78 -3.05 -0.05 -24.58 16 4 N -0.65 -13.01 5.34 -303.58 -1.62 -14.64 16 5 C 0.14 3.86 6.27 38.09 0.24 4.10 16 6 C -0.08 -1.55 9.95 22.45 0.22 -1.32 16 7 C -0.09 -2.02 9.81 22.24 0.22 -1.80 16 8 C -0.02 -0.75 6.35 22.63 0.14 -0.61 16 9 Cl -0.05 -1.90 26.01 -2.72 -0.07 -1.97 16 10 C -0.10 -4.81 5.87 -20.09 -0.12 -4.92 16 11 C 0.42 24.64 7.83 70.29 0.55 25.19 16 12 O -0.55 -32.87 13.21 19.79 0.26 -32.61 16 13 O -0.24 -15.68 8.99 11.31 0.10 -15.58 16 14 C -0.42 -27.54 9.65 67.96 0.66 -26.88 16 15 H 0.09 5.60 6.86 -2.91 -0.02 5.58 16 16 C -0.01 -0.44 5.50 84.89 0.47 0.03 16 17 N -0.90 -56.98 13.67 21.64 0.30 -56.68 16 18 Si 1.02 46.27 29.55 68.60 2.03 48.30 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 22 C -0.09 -3.67 8.22 22.67 0.19 -3.48 16 23 H 0.12 1.02 8.14 -2.38 -0.02 1.01 16 24 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 25 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.44 3.44 8.82 -92.71 -0.82 2.62 16 27 H 0.20 1.30 8.06 -2.91 -0.02 1.27 16 28 H 0.19 2.68 8.06 -2.91 -0.02 2.65 16 29 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 30 H 0.11 5.87 5.97 -2.91 -0.02 5.85 16 Total: -1.00 -95.43 290.79 5.31 -90.12 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 0.39 Total: 5.08 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 3.97 Total: 2.56 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.33 Total: -71.32 kcal Atomic # 8 Polarization: -73.09 SS G_CDS: 0.32 Total: -72.77 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.97 kcal Total: -95.43 5.31 -90.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768098812.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.843 kcal (2) G-P(sol) polarization free energy of solvation -95.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds