Wall clock time and date at job start Tue Mar 31 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99753 * 2 1 4 4 H 1.48502 * 109.46846 * 269.99602 * 3 2 1 5 5 H 1.48498 * 109.47401 * 29.99438 * 3 2 1 6 6 H 1.48497 * 109.47110 * 149.99941 * 3 2 1 7 7 C 1.38797 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99472 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00186 * 180.02562 * 7 2 1 10 10 C 1.81002 * 99.99833 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46873 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99933 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99993 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99999 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46925 * 179.97438 * 14 13 11 16 16 C 1.41375 * 128.01098 * 359.97438 * 15 14 13 17 17 N 1.30175 * 106.40111 * 180.02562 * 16 15 14 18 18 O 1.20923 * 111.59718 * 359.97438 * 17 16 15 19 19 C 1.34035 * 111.57389 * 0.02562 * 18 17 16 20 20 C 1.50699 * 126.77965 * 180.26609 * 19 18 17 21 21 C 1.53008 * 117.49669 * 8.42825 * 20 19 18 22 22 C 1.53006 * 117.49570 * 299.77061 * 20 19 18 23 23 H 0.97005 * 120.00465 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46583 * 60.00219 * 10 9 7 25 25 H 1.08992 * 109.47222 * 299.99627 * 10 9 7 26 26 H 1.09001 * 109.47759 * 59.99384 * 14 13 11 27 27 H 1.09004 * 109.46835 * 299.99077 * 14 13 11 28 28 H 1.08003 * 126.80166 * 359.96509 * 16 15 14 29 29 H 1.08999 * 115.55279 * 154.10477 * 20 19 18 30 30 H 1.08993 * 117.49543 * 359.97438 * 21 20 19 31 31 H 1.08999 * 117.49597 * 145.02702 * 21 20 19 32 32 H 1.08999 * 117.49729 * 214.97815 * 22 20 19 33 33 H 1.09005 * 117.49568 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1372 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0866 -2.9845 0.0025 11 6 5.5731 -3.2324 0.0026 12 8 6.3411 -2.2996 0.0014 13 8 6.0439 -4.4894 0.0030 14 6 7.4866 -4.6530 0.0037 15 6 7.8256 -6.1214 0.0047 16 6 6.9361 -7.2203 0.0055 17 7 7.6755 -8.2916 0.0068 18 8 8.8537 -8.0193 0.0064 19 6 9.0532 -6.6939 0.0053 20 6 10.3811 -5.9814 -0.0011 21 6 11.6374 -6.8304 -0.2059 22 6 11.3278 -6.2410 1.1725 23 1 -0.4851 0.8400 -0.0004 24 1 3.6440 -3.4320 -0.8874 25 1 3.6435 -3.4309 0.8926 26 1 7.9053 -4.1832 0.8937 27 1 7.9059 -4.1836 -0.8863 28 1 5.8569 -7.1790 0.0061 29 1 10.3750 -4.9796 -0.4307 30 1 11.5034 -7.9042 -0.3356 31 1 12.4580 -6.3869 -0.7699 32 1 11.9448 -5.4102 1.5147 33 1 10.9899 -6.9269 1.9494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773479282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:57 Heat of formation + Delta-G solvation = -16.591268 kcal Electronic energy + Delta-G solvation = -18717.294025 eV Core-core repulsion = 15452.275384 eV Total energy + Delta-G solvation = -3265.018641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.09747 -41.56136 -38.37015 -37.82548 -35.34713 -34.68739 -32.87950 -31.54878 -28.51629 -27.85526 -25.26815 -23.56774 -23.18834 -22.38702 -21.50968 -19.92639 -18.84144 -18.77389 -18.30995 -17.76148 -17.35378 -17.06940 -16.52666 -15.92667 -15.67002 -15.32287 -14.92509 -14.73504 -14.51303 -13.82532 -13.81831 -13.35112 -13.08600 -13.02122 -12.77292 -12.52473 -12.40299 -12.32164 -12.01595 -11.90275 -11.69036 -11.39543 -11.29082 -11.17852 -10.62637 -10.03200 -9.05745 -8.52141 -6.25724 0.27078 0.74250 1.04998 1.09259 1.32927 1.33820 1.49821 1.76820 1.95006 2.24038 2.63111 2.86165 2.86970 3.16944 3.33066 3.61813 3.75020 3.80787 3.97694 4.01717 4.09913 4.19250 4.30303 4.37466 4.42368 4.59835 4.79353 4.88394 4.98924 5.09757 5.16988 5.23734 5.69856 6.12063 6.58616 6.91771 7.13335 8.60167 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.038754 B = 0.003016 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.338126 B = 9283.117633 C = 9916.365579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.232 1.232 7 C -0.532 4.532 8 H 0.064 0.936 9 S -0.158 6.158 10 C -0.091 4.091 11 C 0.496 3.504 12 O -0.512 6.512 13 O -0.348 6.348 14 C 0.151 3.849 15 C -0.216 4.216 16 C 0.012 3.988 17 N -0.390 5.390 18 O 0.094 5.906 19 C 0.025 3.975 20 C -0.110 4.110 21 C -0.156 4.156 22 C -0.154 4.154 23 H 0.278 0.722 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.206 0.794 29 H 0.154 0.846 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.547 -12.731 0.481 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.156 1.156 7 C -0.680 4.680 8 H 0.083 0.917 9 S 0.068 5.932 10 C -0.240 4.240 11 C 0.338 3.662 12 O -0.400 6.400 13 O -0.265 6.265 14 C 0.077 3.923 15 C -0.220 4.220 16 C -0.167 4.167 17 N -0.095 5.095 18 O 0.031 5.969 19 C -0.039 4.039 20 C -0.128 4.128 21 C -0.193 4.193 22 C -0.191 4.191 23 H 0.087 0.913 24 H 0.144 0.856 25 H 0.145 0.855 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.223 0.777 29 H 0.172 0.828 30 H 0.117 0.883 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 24.105 -12.855 0.486 27.322 hybrid contribution -1.605 0.335 -0.069 1.641 sum 22.499 -12.520 0.417 25.752 Atomic orbital electron populations 1.70015 1.07423 1.29163 1.48758 1.25586 0.95282 1.02400 0.92756 0.85865 0.80779 0.79392 0.80329 1.18550 1.18468 1.15552 1.22421 0.89928 0.96887 1.58741 0.91730 1.84604 1.06908 1.03995 1.97692 1.22943 0.91379 1.00573 1.09057 1.22755 0.91070 0.80564 0.71822 1.90674 1.59182 1.44527 1.45569 1.86413 1.26357 1.29503 1.84178 1.21009 0.76990 0.89824 1.04489 1.20629 0.92574 0.96304 1.12480 1.25180 1.03439 0.86851 1.01201 1.73897 0.89646 1.25077 1.20888 1.84775 1.20816 1.23504 1.67789 1.23520 0.96783 0.82904 1.00698 1.20755 0.83295 1.00236 1.08549 1.23200 0.96535 0.99888 0.99649 1.23239 1.00074 1.04295 0.91464 0.91273 0.85580 0.85545 0.88472 0.88405 0.77741 0.82811 0.88263 0.85470 0.85466 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.67 13.97 21.65 0.30 -54.37 16 2 C 0.05 2.59 5.50 84.86 0.47 3.06 16 3 Si 0.91 43.08 27.74 68.60 1.90 44.99 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.23 -10.70 6.74 99.48 0.67 -10.03 16 7 C -0.53 -29.90 10.04 67.95 0.68 -29.22 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.16 -7.51 18.55 -56.49 -1.05 -8.56 16 10 C -0.09 -3.28 6.27 71.24 0.45 -2.83 16 11 C 0.50 16.06 7.98 71.24 0.57 16.63 16 12 O -0.51 -19.02 15.61 21.96 0.34 -18.68 16 13 O -0.35 -9.15 9.79 -51.42 -0.50 -9.65 16 14 C 0.15 3.18 5.88 71.24 0.42 3.60 16 15 C -0.22 -4.45 6.26 -19.74 -0.12 -4.57 16 16 C 0.01 0.26 11.62 85.71 1.00 1.26 16 17 N -0.39 -9.59 12.07 -59.28 -0.72 -10.30 16 18 O 0.09 2.02 10.99 71.68 0.79 2.81 16 19 C 0.02 0.45 6.94 25.04 0.17 0.62 16 20 C -0.11 -1.22 6.10 -11.54 -0.07 -1.29 16 21 C -0.16 -1.24 10.19 30.62 0.31 -0.93 16 22 C -0.15 -1.28 10.24 30.62 0.31 -0.97 16 23 H 0.28 15.31 8.31 -92.70 -0.77 14.54 16 24 H 0.13 4.19 8.14 -2.39 -0.02 4.17 16 25 H 0.13 4.20 8.14 -2.40 -0.02 4.18 16 26 H 0.10 1.90 8.13 -2.39 -0.02 1.88 16 27 H 0.10 1.88 8.13 -2.39 -0.02 1.86 16 28 H 0.21 4.08 8.06 -2.91 -0.02 4.06 16 29 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 0.92 8.02 -2.39 -0.02 0.90 16 31 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -68.24 314.22 6.34 -61.89 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.09 Total: 6.51 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 4.18 Total: -14.64 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.41 Total: -64.67 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: 0.63 Total: -25.52 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.90 Total: 44.99 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.05 Total: -8.56 kcal Total: -68.24 6.34 -61.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773479282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.301 kcal (2) G-P(sol) polarization free energy of solvation -68.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds