Wall clock time and date at job start Tue Mar 31 2020 05:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76201 * 103.00008 * 2 1 4 4 C 1.39110 * 120.00373 * 359.97349 * 3 2 1 5 5 C 1.38205 * 120.23189 * 180.02562 * 4 3 2 6 6 C 1.38010 * 120.24730 * 0.02562 * 5 4 3 7 7 C 1.39700 * 120.00506 * 0.02562 * 6 5 4 8 8 C 1.47649 * 120.11689 * 180.27612 * 7 6 5 9 9 O 1.21438 * 120.00019 * 179.72313 * 8 7 6 10 10 O 1.35051 * 120.00075 * 359.71664 * 8 7 6 11 11 C 1.22522 * 117.00231 * 179.97438 * 10 8 7 12 12 H 1.08011 * 119.99837 * 0.02562 * 11 10 8 13 13 C 1.46572 * 120.00186 * 180.02562 * 11 10 8 14 14 N 1.29378 * 120.00316 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00141 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47097 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47461 * 119.99948 * 15 13 11 18 18 H 1.48503 * 109.47002 * 240.00364 * 15 13 11 19 19 C 1.38669 * 120.00483 * 180.02562 * 3 2 1 20 20 N 1.48019 * 120.12344 * 359.95474 * 19 3 2 21 21 O 1.31709 * 119.99865 * 270.02475 * 20 19 3 22 22 O 1.31697 * 120.00379 * 90.02105 * 20 19 3 23 23 H 1.09002 * 109.47062 * 60.00304 * 1 2 3 24 24 H 1.09004 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47469 * 300.00007 * 1 2 3 26 26 H 1.07997 * 119.88248 * 0.04892 * 4 3 2 27 27 H 1.07999 * 119.87180 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.99775 * 179.97438 * 6 5 4 29 29 H 0.96999 * 120.00571 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1930 2.6656 -0.0006 5 6 1.4985 4.0135 -0.0011 6 6 2.8149 4.4279 -0.0016 7 6 3.8446 3.4838 -0.0021 8 6 5.2538 3.9244 0.0035 9 8 6.1472 3.1018 0.0081 10 8 5.5493 5.2422 0.0033 11 6 6.7362 5.5462 0.0086 12 1 7.4914 4.7740 0.0127 13 6 7.1313 6.9576 0.0094 14 7 6.2267 7.8826 0.0050 15 14 8.9409 7.4211 0.0167 16 1 9.7678 6.1876 0.0216 17 1 9.2520 8.2213 -1.1950 18 1 9.2417 8.2227 1.2301 19 6 3.5364 2.1224 -0.0005 20 7 4.6212 1.1153 -0.0001 21 8 5.1037 0.6677 1.1407 22 8 5.1039 0.6668 -1.1404 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.1609 2.3478 -0.0002 27 1 0.7041 4.7451 -0.0011 28 1 3.0491 5.4822 -0.0025 29 1 6.4881 8.8167 0.0052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777074739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:08 Heat of formation + Delta-G solvation = 11.162757 kcal Electronic energy + Delta-G solvation = -19635.156746 eV Core-core repulsion = 16235.508515 eV Total energy + Delta-G solvation = -3399.648231 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.61066 -39.39350 -37.54820 -35.74675 -33.54835 -33.11120 -31.76281 -31.50791 -29.24735 -26.65276 -25.68988 -23.67035 -22.31851 -20.78803 -18.62478 -18.60236 -17.63355 -17.45242 -16.36771 -16.08238 -15.37725 -15.21857 -15.02461 -14.73322 -14.18014 -14.12072 -13.92803 -13.40797 -13.04688 -12.80728 -12.40934 -12.20799 -11.69624 -11.66759 -11.01860 -10.71247 -10.67007 -10.64557 -10.28882 -10.08269 -9.94770 -9.84151 -9.29592 -9.20772 -9.14352 -7.68416 -7.28971 -4.09719 0.56378 0.57487 0.86997 1.11027 1.77450 2.09290 2.69476 2.86638 2.94515 3.05201 3.53382 3.80509 4.02795 4.64976 4.71374 4.75514 4.75857 4.84790 5.14171 5.16703 5.30072 5.35816 5.67976 6.02995 6.20208 6.31962 6.41436 6.62558 6.80077 7.40299 7.42922 8.13269 8.65289 9.59280 9.95776 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.029005 B = 0.004996 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.106101 B = 5603.668278 C = 6415.376232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.096 6.096 3 C -0.048 4.048 4 C -0.147 4.147 5 C -0.069 4.069 6 C -0.095 4.095 7 C 0.004 3.996 8 C 0.309 3.691 9 O -0.565 6.565 10 O -0.124 6.124 11 C -0.333 4.333 12 H 0.107 0.893 13 C 0.040 3.960 14 N -0.781 5.781 15 Si 0.954 3.046 16 H -0.252 1.252 17 H -0.266 1.266 18 H -0.266 1.266 19 C 0.036 3.964 20 N 0.001 4.999 21 O -0.143 6.143 22 O -0.144 6.144 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.088 0.912 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.157 0.843 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.837 -3.447 -0.012 13.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.147 5.853 3 C -0.162 4.162 4 C -0.171 4.171 5 C -0.089 4.089 6 C -0.117 4.117 7 C -0.001 4.001 8 C 0.167 3.833 9 O -0.471 6.471 10 O -0.023 6.023 11 C -0.411 4.411 12 H 0.124 0.876 13 C -0.178 4.178 14 N -0.410 5.410 15 Si 0.776 3.224 16 H -0.175 1.175 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.053 4.053 20 N 0.496 4.504 21 O -0.348 6.348 22 O -0.349 6.349 23 H 0.107 0.893 24 H 0.131 0.869 25 H 0.107 0.893 26 H 0.157 0.843 27 H 0.160 0.840 28 H 0.175 0.825 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.586 -3.906 -0.012 13.178 hybrid contribution 0.224 1.193 0.002 1.214 sum -12.362 -2.713 -0.009 12.656 Atomic orbital electron populations 1.23741 0.94049 1.07526 1.06049 1.86076 1.07099 1.00350 1.91822 1.21125 0.92622 0.98924 1.03486 1.21006 0.97412 0.92631 1.06098 1.21211 0.96739 0.95163 0.95742 1.21529 0.90881 1.00506 0.98769 1.18845 0.93692 0.88987 0.98559 1.19948 0.87938 0.82081 0.93284 1.90715 1.47205 1.51479 1.57671 1.80458 1.30104 1.25979 1.65806 1.21335 0.84168 0.92362 1.43272 0.87594 1.27309 1.01986 0.93158 0.95370 1.68908 1.36934 1.02393 1.32755 0.85390 0.78122 0.79925 0.79008 1.17475 1.19116 1.19122 1.19249 0.84130 0.86609 1.15330 1.49764 0.99475 0.98777 1.02334 1.96211 1.62015 1.61321 1.15298 1.96209 1.62022 1.61291 1.15368 0.89256 0.86899 0.89260 0.84280 0.84026 0.82504 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.15 101.05 0.92 -0.26 15 2 S -0.10 -1.41 21.97 -107.50 -2.36 -3.77 15 3 C -0.05 -0.80 6.11 -39.10 -0.24 -1.04 15 4 C -0.15 -1.91 9.36 -39.27 -0.37 -2.28 15 5 C -0.07 -0.90 10.02 -39.68 -0.40 -1.30 15 6 C -0.10 -1.66 9.62 -39.12 -0.38 -2.04 15 7 C 0.00 0.09 5.87 -105.01 -0.62 -0.53 15 8 C 0.31 8.33 7.77 34.57 0.27 8.60 15 9 O -0.57 -17.06 13.67 -24.18 -0.33 -17.39 15 10 O -0.12 -3.36 8.53 -1.81 -0.02 -3.38 15 11 C -0.33 -9.12 9.62 34.09 0.33 -8.79 15 12 H 0.11 3.05 6.70 -52.48 -0.35 2.70 15 13 C 0.04 0.97 5.69 -15.23 -0.09 0.89 15 14 N -0.78 -19.00 13.66 55.98 0.76 -18.24 15 15 Si 0.95 18.37 29.64 -169.99 -5.04 13.33 15 16 H -0.25 -4.97 7.11 56.52 0.40 -4.57 15 17 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 18 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 19 C 0.04 0.78 6.28 -79.28 -0.50 0.28 15 20 N 0.00 0.02 2.25 34.28 0.08 0.10 15 21 O -0.14 -3.62 19.72 -34.63 -0.68 -4.30 15 22 O -0.14 -3.63 19.74 -34.43 -0.68 -4.31 15 23 H 0.09 0.62 7.74 -51.92 -0.40 0.21 15 24 H 0.11 0.71 8.14 -51.92 -0.42 0.28 15 25 H 0.09 0.62 7.74 -51.92 -0.40 0.21 15 26 H 0.14 1.25 5.86 -52.49 -0.31 0.94 15 27 H 0.14 1.27 8.06 -52.49 -0.42 0.84 15 28 H 0.16 2.69 7.60 -52.49 -0.40 2.29 15 29 H 0.29 6.27 8.26 -40.82 -0.34 5.93 15 LS Contribution 290.08 15.07 4.37 4.37 Total: -1.00 -33.38 290.08 -6.80 -40.18 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -1.84 Total: -0.12 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.06 Total: -6.46 kcal Atomic # 7 Polarization: -18.99 SS G_CDS: 0.84 Total: -18.14 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.71 Total: -29.39 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.04 Total: 13.33 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.36 Total: -3.77 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.38 -6.80 -40.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777074739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.339 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds