Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76201 * 103.00008 * 2 1 4 4 C 1.39110 * 120.00373 * 359.97349 * 3 2 1 5 5 C 1.38205 * 120.23189 * 180.02562 * 4 3 2 6 6 C 1.38010 * 120.24730 * 0.02562 * 5 4 3 7 7 C 1.39700 * 120.00506 * 0.02562 * 6 5 4 8 8 C 1.47649 * 120.11689 * 180.27612 * 7 6 5 9 9 O 1.21438 * 120.00019 * 179.72313 * 8 7 6 10 10 O 1.35051 * 120.00075 * 359.71664 * 8 7 6 11 11 C 1.22522 * 117.00231 * 179.97438 * 10 8 7 12 12 H 1.08011 * 119.99837 * 0.02562 * 11 10 8 13 13 C 1.46572 * 120.00186 * 180.02562 * 11 10 8 14 14 N 1.29378 * 120.00316 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00141 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47097 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47461 * 119.99948 * 15 13 11 18 18 H 1.48503 * 109.47002 * 240.00364 * 15 13 11 19 19 C 1.38669 * 120.00483 * 180.02562 * 3 2 1 20 20 N 1.48019 * 120.12344 * 359.95474 * 19 3 2 21 21 O 1.31709 * 119.99865 * 270.02475 * 20 19 3 22 22 O 1.31697 * 120.00379 * 90.02105 * 20 19 3 23 23 H 1.09002 * 109.47062 * 60.00304 * 1 2 3 24 24 H 1.09004 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47469 * 300.00007 * 1 2 3 26 26 H 1.07997 * 119.88248 * 0.04892 * 4 3 2 27 27 H 1.07999 * 119.87180 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.99775 * 179.97438 * 6 5 4 29 29 H 0.96999 * 120.00571 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1930 2.6656 -0.0006 5 6 1.4985 4.0135 -0.0011 6 6 2.8149 4.4279 -0.0016 7 6 3.8446 3.4838 -0.0021 8 6 5.2538 3.9244 0.0035 9 8 6.1472 3.1018 0.0081 10 8 5.5493 5.2422 0.0033 11 6 6.7362 5.5462 0.0086 12 1 7.4914 4.7740 0.0127 13 6 7.1313 6.9576 0.0094 14 7 6.2267 7.8826 0.0050 15 14 8.9409 7.4211 0.0167 16 1 9.7678 6.1876 0.0216 17 1 9.2520 8.2213 -1.1950 18 1 9.2417 8.2227 1.2301 19 6 3.5364 2.1224 -0.0005 20 7 4.6212 1.1153 -0.0001 21 8 5.1037 0.6677 1.1407 22 8 5.1039 0.6668 -1.1404 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.1609 2.3478 -0.0002 27 1 0.7041 4.7451 -0.0011 28 1 3.0491 5.4822 -0.0025 29 1 6.4881 8.8167 0.0052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777074739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = -10.302445 kcal Electronic energy + Delta-G solvation = -19636.087547 eV Core-core repulsion = 16235.508515 eV Total energy + Delta-G solvation = -3400.579032 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.49894 -41.02547 -39.29094 -37.83030 -35.51071 -34.95376 -33.22732 -33.00348 -30.01988 -28.37561 -27.51538 -25.21767 -23.92619 -22.49182 -20.58000 -20.25399 -19.36888 -19.25566 -17.90403 -17.67688 -17.23285 -16.94266 -16.44707 -16.38125 -15.60709 -15.34374 -15.03128 -14.99017 -14.22247 -14.10108 -13.78314 -13.49795 -13.48897 -12.97478 -12.68499 -12.65265 -12.37787 -12.24367 -12.10570 -11.87111 -11.47887 -11.26576 -11.25908 -11.04919 -10.67221 -9.07078 -8.86786 -6.17845 -1.40796 -0.89807 -0.49626 -0.16489 0.19323 1.09587 1.18531 1.25730 1.41443 1.53864 1.95457 2.17589 2.30246 2.72313 3.38799 3.46243 3.69989 3.81123 3.93684 4.25486 4.25630 4.37274 4.52026 4.58497 4.78235 4.82420 4.91906 4.98363 5.35944 5.39869 5.50073 6.28919 6.62037 7.71269 8.11804 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.029005 B = 0.004996 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.106101 B = 5603.668278 C = 6415.376232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.156 6.156 3 C -0.050 4.050 4 C -0.103 4.103 5 C -0.035 4.035 6 C -0.089 4.089 7 C -0.033 4.033 8 C 0.300 3.700 9 O -0.610 6.610 10 O -0.131 6.131 11 C -0.418 4.418 12 H 0.069 0.931 13 C 0.020 3.980 14 N -0.811 5.811 15 Si 1.020 2.980 16 H -0.272 1.272 17 H -0.243 1.243 18 H -0.243 1.243 19 C 0.005 3.995 20 N 0.006 4.994 21 O -0.169 6.169 22 O -0.169 6.169 23 H 0.114 0.886 24 H 0.136 0.864 25 H 0.114 0.886 26 H 0.203 0.797 27 H 0.208 0.792 28 H 0.157 0.843 29 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.086 -2.749 -0.017 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.087 5.913 3 C -0.165 4.165 4 C -0.127 4.127 5 C -0.055 4.055 6 C -0.111 4.111 7 C -0.037 4.037 8 C 0.158 3.842 9 O -0.518 6.518 10 O -0.031 6.031 11 C -0.496 4.496 12 H 0.087 0.913 13 C -0.196 4.196 14 N -0.441 5.441 15 Si 0.836 3.164 16 H -0.197 1.197 17 H -0.166 1.166 18 H -0.166 1.166 19 C -0.083 4.083 20 N 0.500 4.500 21 O -0.373 6.373 22 O -0.374 6.374 23 H 0.133 0.867 24 H 0.154 0.846 25 H 0.133 0.867 26 H 0.220 0.780 27 H 0.225 0.775 28 H 0.175 0.825 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.892 -3.208 -0.016 18.177 hybrid contribution 1.264 0.640 0.002 1.417 sum -16.627 -2.568 -0.014 16.825 Atomic orbital electron populations 1.24028 0.87121 1.09924 1.08423 1.86511 1.14565 0.99105 1.91135 1.21596 0.91098 1.01280 1.02486 1.21928 0.99046 0.91635 1.00047 1.21931 0.95718 0.96612 0.91193 1.21766 0.91915 0.99636 0.97739 1.18903 0.92243 0.90308 1.02196 1.21058 0.89864 0.81946 0.91324 1.90642 1.49543 1.52870 1.58749 1.80464 1.29900 1.25408 1.67317 1.21145 0.83639 0.93337 1.51443 0.91322 1.28223 1.06282 0.91562 0.93511 1.68866 1.38762 1.03199 1.33260 0.84578 0.72093 0.79022 0.80728 1.19683 1.16629 1.16638 1.19787 0.85021 0.85569 1.17931 1.50199 0.99549 0.98673 1.01592 1.96177 1.63100 1.62505 1.15562 1.96175 1.63094 1.62459 1.15630 0.86727 0.84606 0.86734 0.78029 0.77521 0.82493 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.15 113.37 1.04 -0.16 15 2 S -0.16 -4.12 21.97 -56.49 -1.24 -5.36 15 3 C -0.05 -1.54 6.11 22.58 0.14 -1.41 15 4 C -0.10 -1.93 9.36 22.47 0.21 -1.72 15 5 C -0.04 -0.68 10.02 22.21 0.22 -0.46 15 6 C -0.09 -2.90 9.62 22.57 0.22 -2.68 15 7 C -0.03 -1.49 5.87 -20.11 -0.12 -1.61 15 8 C 0.30 17.48 7.77 70.31 0.55 18.02 15 9 O -0.61 -40.45 13.67 24.78 0.34 -40.11 15 10 O -0.13 -7.75 8.53 82.22 0.70 -7.04 15 11 C -0.42 -25.19 9.62 70.00 0.67 -24.51 15 12 H 0.07 4.50 6.70 -2.90 -0.02 4.48 15 13 C 0.02 1.01 5.69 87.23 0.50 1.51 15 14 N -0.81 -40.79 13.66 23.21 0.32 -40.47 15 15 Si 1.02 39.22 29.64 68.60 2.03 41.26 15 16 H -0.27 -11.24 7.11 99.48 0.71 -10.54 15 17 H -0.24 -8.36 7.11 99.48 0.71 -7.66 15 18 H -0.24 -8.37 7.11 99.48 0.71 -7.66 15 19 C 0.01 0.24 6.28 36.80 0.23 0.47 15 20 N 0.01 0.33 2.25 -45.44 -0.10 0.23 15 21 O -0.17 -9.12 19.72 6.42 0.13 -8.99 15 22 O -0.17 -9.12 19.74 6.26 0.12 -9.00 15 23 H 0.11 0.61 7.74 -2.39 -0.02 0.59 15 24 H 0.14 0.81 8.14 -2.39 -0.02 0.79 15 25 H 0.11 0.61 7.74 -2.39 -0.02 0.59 15 26 H 0.20 1.46 5.86 -2.91 -0.02 1.44 15 27 H 0.21 1.59 8.06 -2.91 -0.02 1.57 15 28 H 0.16 5.18 7.60 -2.91 -0.02 5.16 15 29 H 0.31 13.30 8.26 -92.71 -0.77 12.53 15 Total: -1.00 -87.89 290.08 7.17 -80.72 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: 1.22 Total: 1.31 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 3.65 Total: -12.54 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.21 Total: -40.24 kcal Atomic # 8 Polarization: -66.44 SS G_CDS: 1.29 Total: -65.15 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -1.24 Total: -5.36 kcal Total: -87.89 7.17 -80.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777074739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.417 kcal (2) G-P(sol) polarization free energy of solvation -87.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds