Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47522 * 300.00351 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00717 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.50694 * 109.47550 * 180.02562 * 14 13 11 16 16 C 1.38248 * 119.92984 * 269.73374 * 15 14 13 17 17 C 1.38240 * 120.14869 * 179.72468 * 16 15 14 18 18 C 1.38563 * 119.99989 * 0.54021 * 17 16 15 19 19 O 1.35995 * 120.07579 * 179.70750 * 18 17 16 20 20 C 1.39159 * 119.85309 * 359.73528 * 18 17 16 21 21 O 1.35994 * 120.07417 * 180.02562 * 20 18 17 22 22 C 1.38243 * 119.92761 * 89.99854 * 15 14 13 23 23 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 25 25 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 26 26 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 27 27 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 28 28 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 29 29 H 1.08005 * 119.92680 * 359.96663 * 16 15 14 30 30 H 1.08008 * 120.00482 * 180.24829 * 17 16 15 31 31 H 0.96705 * 113.99585 * 270.02217 * 19 18 17 32 32 H 0.96703 * 113.99836 * 269.97312 * 21 20 18 33 33 H 1.08005 * 120.00105 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 6 3.4849 -8.6836 -0.0203 16 6 4.0080 -9.1257 -1.2212 17 6 5.0706 -10.0099 -1.2322 18 6 5.6066 -10.4638 -0.0378 19 8 6.6481 -11.3382 -0.0469 20 6 5.0764 -10.0233 1.1711 21 8 5.5994 -10.4655 2.3460 22 6 4.0150 -9.1326 1.1749 23 1 -0.4851 0.8400 0.0004 24 1 3.1252 -3.7316 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 3.8010 -6.1834 -0.0093 27 1 1.7235 -7.8794 0.8762 28 1 1.7203 -7.8707 -0.9037 29 1 3.5880 -8.7764 -2.1530 30 1 5.4800 -10.3506 -2.1718 31 1 6.3812 -12.2677 -0.0520 32 1 5.1828 -11.2701 2.6838 33 1 3.6021 -8.7887 2.1118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778924450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -100.155938 kcal Electronic energy + Delta-G solvation = -18467.817197 eV Core-core repulsion = 15199.174919 eV Total energy + Delta-G solvation = -3268.642277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.64326 -39.16426 -37.35996 -37.26345 -34.35336 -32.42426 -31.20591 -30.28895 -28.92940 -25.74943 -25.29789 -23.22707 -21.91607 -20.41358 -19.19177 -18.20853 -17.73319 -16.75822 -16.57404 -16.26617 -15.67403 -15.16237 -15.07543 -14.79953 -14.34680 -14.03073 -13.94686 -13.25124 -13.13928 -12.85339 -12.58562 -12.26937 -12.24600 -11.73102 -11.62801 -11.06454 -11.01516 -10.75751 -10.59720 -9.80672 -9.57299 -9.24979 -9.07618 -8.93432 -8.86741 -8.23267 -6.49806 -6.21518 -3.91975 0.63905 0.81495 2.89477 3.07516 3.17434 3.22245 3.30111 3.37621 3.64830 3.71554 3.85555 4.20749 4.37772 4.45733 4.85100 4.95343 5.12363 5.13836 5.20899 5.34271 5.52909 5.56037 5.74684 5.76098 5.88362 5.89402 6.14479 6.15014 6.27058 6.54721 6.97594 7.37255 7.60512 7.67808 8.36007 8.58042 9.24100 10.85985 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034542 B = 0.002744 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.401829 B =10203.127665 C =10453.045686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.736 5.736 14 C 0.162 3.838 15 C -0.094 4.094 16 C -0.092 4.092 17 C -0.132 4.132 18 C 0.083 3.917 19 O -0.489 6.489 20 C 0.078 3.922 21 O -0.487 6.487 22 C -0.111 4.111 23 H 0.268 0.732 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.400 0.600 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.387 0.613 32 H 0.387 0.613 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.589 -24.012 -0.206 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.391 5.391 14 C 0.039 3.961 15 C -0.095 4.095 16 C -0.110 4.110 17 C -0.150 4.150 18 C 0.038 3.962 19 O -0.298 6.298 20 C 0.033 3.967 21 O -0.297 6.297 22 C -0.130 4.130 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.234 0.766 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.243 0.757 32 H 0.242 0.758 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.115 -23.239 -0.252 24.964 hybrid contribution 1.962 0.419 0.096 2.009 sum 11.077 -22.820 -0.156 25.367 Atomic orbital electron populations 1.70031 1.05950 1.27345 1.47003 1.25000 0.95039 0.99061 0.94545 0.86106 0.79599 0.81840 0.77887 1.19603 1.20575 1.20568 1.22911 0.94958 0.91614 1.58778 0.90856 1.85383 1.04932 0.96369 1.96721 1.23536 1.06597 0.95219 1.05045 1.20341 0.86473 0.86236 0.75056 1.90706 1.15322 1.85554 1.47550 1.46073 1.10168 1.04809 1.78023 1.20116 0.92784 0.79792 1.03455 1.19876 0.98106 0.98738 0.92748 1.21091 0.95443 0.96338 0.98154 1.21373 0.96486 0.99501 0.97680 1.18866 0.90050 0.95452 0.91822 1.84925 1.29599 1.18934 1.96390 1.18771 0.94070 0.98737 0.85149 1.84943 1.61742 1.47225 1.35762 1.21363 0.95055 0.97589 0.98979 0.92242 0.89151 0.89133 0.76617 0.90551 0.90379 0.84742 0.84690 0.75739 0.75762 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.28 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 C 0.53 9.84 7.85 -10.98 -0.09 9.76 16 12 O -0.52 -11.57 15.86 5.55 0.09 -11.48 16 13 N -0.74 -9.79 5.55 -61.47 -0.34 -10.13 16 14 C 0.16 1.82 5.80 -5.20 -0.03 1.79 16 15 C -0.09 -0.86 5.25 -104.62 -0.55 -1.41 16 16 C -0.09 -0.75 9.69 -39.58 -0.38 -1.13 16 17 C -0.13 -1.04 9.98 -39.46 -0.39 -1.43 16 18 C 0.08 0.73 6.72 -39.12 -0.26 0.46 16 19 O -0.49 -3.86 13.29 -34.23 -0.45 -4.31 16 20 C 0.08 0.71 6.72 -39.12 -0.26 0.45 16 21 O -0.49 -4.14 13.29 -34.22 -0.45 -4.60 16 22 C -0.11 -1.01 9.63 -39.46 -0.38 -1.39 16 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 25 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 26 H 0.40 4.46 8.46 -40.82 -0.35 4.12 16 27 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 28 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 30 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.39 1.00 9.06 45.56 0.41 1.41 16 32 H 0.39 1.25 9.06 45.56 0.41 1.66 16 33 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 314.77 15.07 4.74 4.74 Total: -1.00 -37.32 314.77 -6.87 -44.18 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -2.02 Total: 3.25 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.93 Total: -8.78 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.39 Total: -35.62 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.82 Total: -20.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -37.32 -6.87 -44.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778924450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.973 kcal (2) G-P(sol) polarization free energy of solvation -37.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds