Wall clock time and date at job start Tue Mar 31 2020 05:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31309 * 1 3 3 Si 1.86802 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47098 * 270.00300 * 3 2 1 5 5 H 1.48501 * 109.47006 * 29.99852 * 3 2 1 6 6 H 1.48494 * 109.47304 * 149.99885 * 3 2 1 7 7 C 1.38971 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00147 * 180.02562 * 7 2 1 9 9 N 1.37315 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.36606 * 126.07990 * 180.30411 * 9 7 2 11 11 C 1.35632 * 107.50199 * 180.14682 * 10 9 7 12 12 N 1.40570 * 126.07162 * 179.84546 * 11 10 9 13 13 S 1.65604 * 120.00018 * 224.71210 * 12 11 10 14 14 O 1.42099 * 106.39870 * 311.45946 * 13 12 11 15 15 O 1.42100 * 106.40160 * 178.54373 * 13 12 11 16 16 C 1.76196 * 107.21592 * 65.00003 * 13 12 11 17 17 C 1.34517 * 125.78846 * 90.00623 * 16 13 12 18 18 C 1.41388 * 106.83576 * 180.02562 * 17 16 13 19 19 C 1.34511 * 106.84442 * 359.97438 * 18 17 16 20 20 O 1.34295 * 108.42007 * 0.27361 * 19 18 17 21 21 C 1.40650 * 107.84976 * 359.57999 * 11 10 9 22 22 N 1.30930 * 108.40708 * 0.26500 * 21 11 10 23 23 H 0.96999 * 119.99918 * 0.02562 * 1 2 3 24 24 H 1.08001 * 126.24550 * 359.97438 * 10 9 7 25 25 H 0.96996 * 120.00439 * 44.71587 * 12 11 10 26 26 H 1.07992 * 126.58224 * 0.04762 * 17 16 13 27 27 H 1.08001 * 126.57171 * 180.02562 * 18 17 16 28 28 H 1.08002 * 125.78644 * 179.97438 * 19 18 17 29 29 H 1.08000 * 125.79624 * 180.23194 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 2.4945 2.0465 -1.4001 5 1 1.4445 2.6527 0.7000 6 1 3.5446 1.4403 0.7000 7 6 2.0080 -1.2035 0.0005 8 1 3.0879 -1.2035 0.0010 9 7 1.3214 -2.3927 0.0016 10 6 1.8753 -3.6414 0.0081 11 6 0.8583 -4.5388 0.0035 12 7 0.9894 -5.9384 0.0045 13 16 0.0567 -6.8581 -1.0088 14 8 -1.2790 -6.3995 -0.8512 15 8 0.4449 -8.2084 -0.7963 16 6 0.5287 -6.4583 -2.6586 17 6 1.4920 -7.0695 -3.3712 18 6 1.5339 -6.4333 -4.6332 19 6 0.5934 -5.4718 -4.6164 20 8 -0.0084 -5.4878 -3.4159 21 6 -0.3508 -3.8201 0.0037 22 7 -0.0714 -2.5410 0.0026 23 1 -0.4850 0.8400 -0.0004 24 1 2.9304 -3.8719 0.0129 25 1 1.6261 -6.3655 0.5986 26 1 2.1137 -7.8891 -3.0426 27 1 2.1939 -6.6739 -5.4535 28 1 0.3647 -4.7978 -5.4287 29 1 -1.3414 -4.2504 0.0042 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783529413.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:09 Heat of formation + Delta-G solvation = 31.681215 kcal Electronic energy + Delta-G solvation = -19894.246649 eV Core-core repulsion = 16527.780917 eV Total energy + Delta-G solvation = -3366.465733 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.44362 -39.60737 -36.95739 -35.59272 -34.60241 -33.10235 -33.02477 -30.33378 -29.75021 -27.47621 -24.86222 -22.25615 -21.81564 -20.79959 -20.06978 -19.28893 -18.49539 -17.49656 -17.06027 -15.96207 -15.89692 -15.62570 -15.48357 -14.66416 -13.94912 -13.71314 -13.39230 -13.10198 -12.91674 -12.71921 -12.21985 -11.93944 -11.90107 -11.75806 -11.58466 -11.29021 -11.24037 -10.91801 -10.60796 -10.20140 -10.02726 -9.42138 -9.01022 -8.87271 -8.21795 -7.10551 -6.65941 -4.36428 0.55092 1.35107 2.43419 2.89364 2.99364 3.04891 3.09221 3.41094 3.44890 3.76898 3.94907 4.07229 4.63038 4.83196 4.88958 4.92189 5.01749 5.48072 5.65355 5.84144 6.04371 6.23506 6.32357 6.37913 6.81298 6.92708 7.06747 7.24256 7.51149 7.74584 8.10462 8.56636 9.23627 9.49699 10.29521 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.005407 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.947983 B = 5177.685986 C = 5716.829713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.140 5.140 10 C -0.059 4.059 11 C -0.069 4.069 12 N -0.999 5.999 13 S 2.709 3.291 14 O -0.936 6.936 15 O -0.962 6.962 16 C -0.560 4.560 17 C -0.101 4.101 18 C -0.240 4.240 19 C 0.008 3.992 20 O -0.110 6.110 21 C -0.031 4.031 22 N -0.252 5.252 23 H 0.277 0.723 24 H 0.149 0.851 25 H 0.414 0.586 26 H 0.162 0.838 27 H 0.155 0.845 28 H 0.210 0.790 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 -7.963 -5.846 10.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.136 0.864 9 N 0.094 4.906 10 C -0.212 4.212 11 C -0.179 4.179 12 N -0.754 5.754 13 S 2.793 3.207 14 O -0.926 6.926 15 O -0.951 6.951 16 C -0.689 4.689 17 C -0.122 4.122 18 C -0.260 4.260 19 C -0.065 4.065 20 O -0.002 6.002 21 C -0.210 4.210 22 N -0.081 5.081 23 H 0.087 0.913 24 H 0.166 0.834 25 H 0.250 0.750 26 H 0.179 0.821 27 H 0.173 0.827 28 H 0.226 0.774 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.890 -6.975 -5.684 9.450 hybrid contribution 1.854 -0.113 -0.600 1.951 sum 4.744 -7.088 -6.284 10.594 Atomic orbital electron populations 1.70205 1.06145 1.28268 1.34625 1.25661 0.95733 1.00364 0.95307 0.85807 0.79433 0.79794 0.79031 1.19551 1.19989 1.18737 1.19936 0.91782 0.80474 1.53311 0.86399 1.44674 1.04054 1.03582 1.38321 1.21671 0.97490 0.85284 1.16783 1.16748 0.93591 0.80481 1.27067 1.52079 1.59177 1.14096 1.50063 1.02459 0.74542 0.72293 0.71454 1.93571 1.33545 1.81318 1.84182 1.93586 1.84130 1.33025 1.84401 1.36083 1.10778 1.01412 1.20630 1.21908 0.96627 0.99799 0.93842 1.22003 1.03873 1.00562 0.99531 1.24679 0.94228 0.99599 0.87952 1.84296 1.50667 1.43542 1.21673 1.24119 0.97745 0.91757 1.07381 1.78291 0.90247 1.14475 1.25135 0.91252 0.83390 0.75032 0.82056 0.82712 0.77390 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.51 11.81 55.49 0.66 -19.86 15 2 C 0.05 1.17 5.50 -17.50 -0.10 1.07 15 3 Si 0.94 18.15 29.55 -169.99 -5.02 13.13 15 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 7 C -0.32 -8.15 10.25 -14.82 -0.15 -8.30 15 8 H 0.12 2.65 7.83 -52.49 -0.41 2.24 15 9 N -0.14 -3.66 3.74 -11.40 -0.04 -3.70 15 10 C -0.06 -1.32 11.50 -16.36 -0.19 -1.50 15 11 C -0.07 -1.50 6.57 -83.87 -0.55 -2.05 15 12 N -1.00 -17.04 5.93 32.32 0.19 -16.85 15 13 S 2.71 46.47 5.85 -107.50 -0.63 45.84 15 14 O -0.94 -18.93 15.83 -57.21 -0.91 -19.84 15 15 O -0.96 -16.57 17.83 -57.17 -1.02 -17.59 15 16 C -0.56 -9.49 7.30 29.42 0.21 -9.28 15 17 C -0.10 -1.45 10.63 -39.70 -0.42 -1.88 15 18 C -0.24 -3.08 10.91 -39.70 -0.43 -3.52 15 19 C 0.01 0.11 12.09 29.41 0.36 0.47 15 20 O -0.11 -1.97 10.65 5.71 0.06 -1.91 15 21 C -0.03 -0.77 11.16 -17.03 -0.19 -0.96 15 22 N -0.25 -6.95 10.40 30.80 0.32 -6.63 15 23 H 0.28 6.77 8.31 -40.82 -0.34 6.43 15 24 H 0.15 2.80 8.06 -52.49 -0.42 2.38 15 25 H 0.41 5.67 8.96 -34.47 -0.31 5.36 15 26 H 0.16 1.90 8.06 -52.49 -0.42 1.48 15 27 H 0.16 1.46 8.06 -52.49 -0.42 1.04 15 28 H 0.21 1.94 8.06 -52.49 -0.42 1.52 15 29 H 0.17 4.03 6.79 -52.49 -0.36 3.67 15 LS Contribution 282.94 15.07 4.26 4.26 Total: -1.00 -33.64 282.94 -5.49 -39.13 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -1.90 Total: 9.95 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -1.46 Total: -25.94 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 1.13 Total: -47.03 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -1.86 Total: -39.34 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Atomic # 16 Polarization: 46.47 SS G_CDS: -0.63 Total: 45.84 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.64 -5.49 -39.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783529413.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.814 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds