Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99851 * 2 1 4 4 H 1.48494 * 109.47289 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46850 * 300.00533 * 3 2 1 6 6 H 1.48501 * 109.47131 * 59.99925 * 3 2 1 7 7 C 1.37874 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99722 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47278 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46896 * 180.02562 * 10 9 7 12 12 S 1.65596 * 119.99812 * 164.65492 * 11 10 9 13 13 O 1.42101 * 106.40389 * 176.86021 * 12 11 10 14 14 O 1.42098 * 106.40376 * 309.78132 * 12 11 10 15 15 C 1.76199 * 107.21903 * 63.32389 * 12 11 10 16 16 C 1.37911 * 120.08703 * 243.02821 * 15 12 11 17 17 C 1.38384 * 120.17331 * 179.97438 * 16 15 12 18 18 C 1.38420 * 120.34749 * 359.97438 * 17 16 15 19 19 C 1.37862 * 120.17605 * 0.02705 * 18 17 16 20 20 C 1.39827 * 120.09222 * 62.74612 * 15 12 11 21 21 C 1.47170 * 120.17063 * 0.02562 * 20 15 12 22 22 O 1.21256 * 119.99738 * 354.10660 * 21 20 15 23 23 H 0.96996 * 120.00145 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47422 * 59.99742 * 9 7 2 25 25 H 1.09004 * 109.47091 * 299.99725 * 9 7 2 26 26 H 1.08993 * 109.46760 * 60.00092 * 10 9 7 27 27 H 1.08998 * 109.47056 * 299.99467 * 10 9 7 28 28 H 0.97001 * 120.00427 * 344.37332 * 11 10 9 29 29 H 1.08004 * 119.91246 * 359.97438 * 16 15 12 30 30 H 1.08001 * 119.82654 * 179.97438 * 17 16 15 31 31 H 1.08006 * 119.91478 * 179.97438 * 18 17 16 32 32 H 1.07995 * 120.09066 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.00026 * 174.09869 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 7 1.5130 -4.9308 -0.0045 12 16 2.2969 -6.3388 -0.3854 13 8 1.3462 -7.3830 -0.2269 14 8 2.9891 -6.0962 -1.6025 15 6 3.5307 -6.5984 0.8455 16 6 4.8646 -6.6098 0.4956 17 6 5.8352 -6.8129 1.4610 18 6 5.4762 -7.0056 2.7839 19 6 4.1470 -6.9970 3.1495 20 6 3.1603 -6.7874 2.1804 21 6 1.7394 -6.7711 2.5632 22 8 0.8935 -6.4879 1.7419 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8920 25 1 0.6242 -2.5575 0.8881 26 1 2.8721 -3.6050 0.8873 27 1 2.8721 -3.6035 -0.8927 28 1 0.5698 -4.9466 0.2214 29 1 5.1526 -6.4598 -0.5344 30 1 6.8781 -6.8212 1.1807 31 1 6.2394 -7.1639 3.5315 32 1 3.8685 -7.1479 4.1820 33 1 1.4500 -7.0115 3.5756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784372688.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = -74.231756 kcal Electronic energy + Delta-G solvation = -20176.220127 eV Core-core repulsion = 16908.702007 eV Total energy + Delta-G solvation = -3267.518120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.09952 -38.43591 -36.64089 -35.42680 -35.21793 -32.67523 -31.78231 -31.54090 -29.02927 -25.24636 -24.42557 -23.33671 -21.63267 -20.96225 -19.13493 -18.04383 -17.30174 -16.57199 -16.24516 -16.11146 -15.36725 -15.14190 -14.72162 -14.52468 -14.45008 -14.15040 -13.77837 -13.65723 -12.92147 -12.61101 -12.43383 -11.96392 -11.69747 -11.63117 -11.51412 -11.22728 -11.08806 -10.76850 -10.57356 -10.41877 -10.01131 -9.65701 -9.52387 -9.30810 -9.21497 -8.74220 -8.37629 -6.05245 -4.08551 0.13560 0.75205 0.89769 2.21683 3.26806 3.28970 3.36519 3.40186 3.52306 3.89016 4.07861 4.34670 4.42929 4.56878 4.75813 4.88763 5.13544 5.26648 5.31263 5.31496 5.56265 5.72518 5.81885 5.93296 5.99235 6.24887 6.46945 6.58457 6.80705 7.09282 7.61526 7.70077 7.75679 7.94910 8.32359 8.97721 9.55694 11.06242 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.005118 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.562025 B = 5469.586402 C = 5865.562775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.019 3.981 10 C 0.119 3.881 11 N -1.096 6.096 12 S 2.701 3.299 13 O -0.958 6.958 14 O -0.971 6.971 15 C -0.626 4.626 16 C -0.034 4.034 17 C -0.111 4.111 18 C -0.086 4.086 19 C -0.091 4.091 20 C -0.091 4.091 21 C 0.358 3.642 22 O -0.417 6.417 23 H 0.261 0.739 24 H 0.026 0.974 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.422 0.578 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.132 -15.438 8.233 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.020 4.020 10 C -0.006 4.006 11 N -0.860 5.860 12 S 2.787 3.213 13 O -0.948 6.948 14 O -0.961 6.961 15 C -0.709 4.709 16 C -0.053 4.053 17 C -0.130 4.130 18 C -0.104 4.104 19 C -0.110 4.110 20 C -0.093 4.093 21 C 0.214 3.786 22 O -0.288 6.288 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.259 0.741 29 H 0.166 0.834 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.560 -15.710 7.048 19.694 hybrid contribution 0.748 1.125 0.964 1.660 sum 10.309 -14.585 8.011 19.574 Atomic orbital electron populations 1.69976 1.06069 1.26683 1.50373 1.25006 0.94868 0.99331 0.95124 0.86491 0.80063 0.83556 0.77611 1.19680 1.20915 1.21018 1.21139 0.93170 0.90581 1.51276 0.92307 1.19270 0.94048 0.90457 0.98238 1.21594 0.96058 0.83165 0.99822 1.55428 1.21896 1.21218 1.87480 1.01750 0.73004 0.73282 0.73275 1.93570 1.59311 1.55433 1.86464 1.93560 1.75655 1.85683 1.41165 1.31692 1.14124 1.11964 1.13165 1.21073 0.90775 0.92402 1.01036 1.21563 1.00095 0.98145 0.93208 1.21409 0.96313 0.96146 0.96525 1.21477 0.92654 0.97609 0.99239 1.20663 0.96939 0.99098 0.92630 1.24350 0.86387 0.73519 0.94381 1.90554 1.53136 1.32120 1.52947 0.92911 0.95534 0.95819 0.93610 0.91605 0.74087 0.83370 0.84644 0.84731 0.84203 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.52 9.11 -34.45 -0.31 -14.84 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.48 5.12 -27.88 -0.14 0.33 16 10 C 0.12 2.48 6.14 -4.04 -0.02 2.46 16 11 N -1.10 -20.59 4.74 -10.61 -0.05 -20.64 16 12 S 2.70 47.70 4.90 -107.50 -0.53 47.17 16 13 O -0.96 -18.61 15.25 -67.23 -1.03 -19.64 16 14 O -0.97 -19.09 16.50 -57.17 -0.94 -20.03 16 15 C -0.63 -9.01 5.88 -39.11 -0.23 -9.24 16 16 C -0.03 -0.42 9.54 -39.65 -0.38 -0.80 16 17 C -0.11 -1.04 10.04 -39.46 -0.40 -1.44 16 18 C -0.09 -0.69 10.03 -39.65 -0.40 -1.09 16 19 C -0.09 -0.79 9.80 -39.11 -0.38 -1.18 16 20 C -0.09 -1.11 5.87 -105.06 -0.62 -1.72 16 21 C 0.36 4.23 11.30 34.36 0.39 4.62 16 22 O -0.42 -6.66 10.69 -19.12 -0.20 -6.87 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 1.38 7.78 -51.93 -0.40 0.97 16 28 H 0.42 7.85 7.47 -34.46 -0.26 7.60 16 29 H 0.15 1.75 7.34 -52.48 -0.38 1.37 16 30 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -35.77 299.80 -8.66 -44.43 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.55 Total: 1.85 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.59 Total: -21.34 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.69 Total: -46.41 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -2.17 Total: -46.54 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 47.70 SS G_CDS: -0.53 Total: 47.17 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.77 -8.66 -44.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784372688.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.806 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds