Wall clock time and date at job start Tue Mar 31 2020 05:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86793 * 119.99948 * 2 1 4 4 H 1.48500 * 109.47092 * 274.97479 * 3 2 1 5 5 H 1.48503 * 109.47358 * 34.97816 * 3 2 1 6 6 H 1.48504 * 109.47161 * 154.97827 * 3 2 1 7 7 C 1.38981 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99618 * 185.94223 * 7 2 1 9 9 N 1.37310 * 120.00138 * 5.94670 * 7 2 1 10 10 C 1.36605 * 126.07555 * 174.13807 * 9 7 2 11 11 C 1.35631 * 107.50380 * 180.02562 * 10 9 7 12 12 N 1.40576 * 126.07726 * 179.97438 * 11 10 9 13 13 S 1.65603 * 120.00033 * 134.99378 * 12 11 10 14 14 O 1.42095 * 106.40294 * 311.46363 * 13 12 11 15 15 O 1.42093 * 106.39895 * 178.53732 * 13 12 11 16 16 C 1.76208 * 107.21777 * 65.00183 * 13 12 11 17 17 C 1.41377 * 126.58038 * 89.99304 * 16 13 12 18 18 C 1.34505 * 106.84247 * 179.97438 * 17 16 13 19 19 O 1.34301 * 108.42120 * 0.02562 * 18 17 16 20 20 C 1.34304 * 109.47916 * 359.97438 * 19 18 17 21 21 C 1.40656 * 107.84859 * 0.22122 * 11 10 9 22 22 N 1.30931 * 108.40360 * 359.61827 * 21 11 10 23 23 H 0.97001 * 120.00130 * 0.02562 * 1 2 3 24 24 H 1.08000 * 126.24583 * 0.06324 * 10 9 7 25 25 H 0.96990 * 119.99670 * 314.99448 * 12 11 10 26 26 H 1.08001 * 126.57694 * 0.27122 * 17 16 13 27 27 H 1.07997 * 125.79315 * 180.02562 * 18 17 16 28 28 H 1.07996 * 125.79711 * 180.02562 * 20 19 18 29 29 H 1.08006 * 125.79814 * 179.77567 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3893 2.1071 -1.3948 5 1 1.5010 2.6200 0.8026 6 1 3.5932 1.4120 0.5922 7 6 2.0078 -1.2037 0.0005 8 1 3.0835 -1.2061 0.0974 9 7 1.3268 -2.3896 -0.1221 10 6 1.8865 -3.6293 -0.2490 11 6 0.8737 -4.5265 -0.3429 12 7 1.0113 -5.9181 -0.4866 13 16 0.0820 -6.9406 0.4263 14 8 0.1805 -6.4824 1.7677 15 8 0.4278 -8.2601 0.0282 16 6 -1.5939 -6.6972 -0.0608 17 6 -2.2828 -7.3881 -1.0839 18 6 -3.5320 -6.8906 -1.1173 19 8 -3.6355 -5.9399 -0.1744 20 6 -2.4632 -5.8183 0.4696 21 6 -0.3387 -3.8165 -0.2768 22 7 -0.0653 -2.5434 -0.1399 23 1 -0.4850 0.8400 -0.0004 24 1 2.9427 -3.8539 -0.2700 25 1 1.6504 -6.2793 -1.1203 26 1 -1.8840 -8.1693 -1.7142 27 1 -4.3184 -7.2026 -1.7885 28 1 -2.2540 -5.1317 1.2766 29 1 -1.3273 -4.2485 -0.3274 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795304433.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:24 Heat of formation + Delta-G solvation = 30.806242 kcal Electronic energy + Delta-G solvation = -19862.919044 eV Core-core repulsion = 16496.415370 eV Total energy + Delta-G solvation = -3366.503674 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.66295 -39.63759 -36.81356 -35.49151 -34.58486 -33.21705 -33.07798 -30.45117 -29.68737 -27.47675 -24.89215 -22.61872 -21.82967 -20.84145 -20.08356 -19.08073 -18.43845 -17.61146 -16.89159 -16.12636 -15.74841 -15.70935 -15.39455 -14.64501 -14.37587 -13.90705 -13.43772 -13.17382 -12.92978 -12.75433 -12.15735 -11.88268 -11.77077 -11.71677 -11.61468 -11.26378 -11.11110 -10.97053 -10.57710 -10.46757 -10.09874 -9.45165 -8.94508 -8.76804 -8.26697 -7.07545 -6.66891 -4.37288 0.78727 1.47910 2.19814 2.89979 2.99082 3.01624 3.06544 3.40509 3.51381 3.78775 3.92695 4.17082 4.43779 4.60685 4.80636 4.91580 5.18529 5.32729 5.68523 5.92439 5.95166 6.25503 6.27069 6.29979 6.70091 6.81932 7.03867 7.18816 7.51370 7.74575 8.05512 8.55020 9.23109 9.45491 10.29652 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.005154 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.226593 B = 5431.880153 C = 6136.065478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.120 0.880 9 N -0.140 5.140 10 C -0.056 4.056 11 C -0.047 4.047 12 N -1.018 6.018 13 S 2.727 3.273 14 O -0.954 6.954 15 O -0.972 6.972 16 C -0.760 4.760 17 C -0.136 4.136 18 C -0.052 4.052 19 O -0.168 6.168 20 C 0.110 3.890 21 C -0.074 4.074 22 N -0.246 5.246 23 H 0.276 0.724 24 H 0.151 0.849 25 H 0.411 0.589 26 H 0.160 0.840 27 H 0.208 0.792 28 H 0.225 0.775 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 -8.633 -2.607 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.170 4.170 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.137 0.863 9 N 0.093 4.907 10 C -0.208 4.208 11 C -0.155 4.155 12 N -0.772 5.772 13 S 2.814 3.186 14 O -0.944 6.944 15 O -0.963 6.963 16 C -0.847 4.847 17 C -0.156 4.156 18 C -0.119 4.119 19 O -0.061 6.061 20 C 0.038 3.962 21 C -0.250 4.250 22 N -0.077 5.077 23 H 0.086 0.914 24 H 0.169 0.831 25 H 0.246 0.754 26 H 0.178 0.822 27 H 0.225 0.775 28 H 0.241 0.759 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.038 -7.672 -1.677 8.830 hybrid contribution 0.557 -0.095 -0.991 1.141 sum -3.482 -7.767 -2.668 8.920 Atomic orbital electron populations 1.70197 1.06198 1.28194 1.35114 1.25653 0.95725 1.00376 0.95240 0.85779 0.79540 0.79804 0.78879 1.19616 1.20056 1.18667 1.19963 0.92332 0.80524 1.52672 0.86267 1.44585 1.03678 1.04097 1.38382 1.21668 0.97646 0.85561 1.15947 1.16684 0.93437 0.81398 1.23944 1.52124 1.53955 1.13854 1.57297 1.00898 0.72522 0.71867 0.73315 1.93582 1.85741 1.81589 1.33445 1.93536 1.83083 1.35870 1.83774 1.32168 1.27043 1.12143 1.13340 1.21372 0.93456 1.01938 0.98792 1.24176 0.99788 0.92690 0.95249 1.84113 1.34892 1.47456 1.39596 1.24275 0.81278 0.95665 0.95026 1.23765 0.96629 0.92711 1.11894 1.78192 0.90969 1.13934 1.24613 0.91355 0.83135 0.75404 0.82199 0.77499 0.75854 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.46 11.84 55.49 0.66 -19.80 15 2 C 0.05 1.17 5.50 -17.50 -0.10 1.08 15 3 Si 0.94 18.24 29.56 -169.99 -5.02 13.22 15 4 H -0.27 -5.23 7.11 56.52 0.40 -4.82 15 5 H -0.28 -5.34 7.11 56.52 0.40 -4.93 15 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 7 C -0.32 -8.19 10.24 -14.82 -0.15 -8.34 15 8 H 0.12 2.72 7.84 -52.48 -0.41 2.30 15 9 N -0.14 -3.65 3.74 -11.40 -0.04 -3.69 15 10 C -0.06 -1.29 11.50 -16.36 -0.19 -1.47 15 11 C -0.05 -1.01 6.41 -83.86 -0.54 -1.54 15 12 N -1.02 -17.57 5.93 32.32 0.19 -17.38 15 13 S 2.73 46.41 5.77 -107.50 -0.62 45.79 15 14 O -0.95 -19.23 17.59 -57.17 -1.01 -20.24 15 15 O -0.97 -17.30 17.90 -57.17 -1.02 -18.33 15 16 C -0.76 -11.76 5.39 -39.70 -0.21 -11.98 15 17 C -0.14 -1.80 10.75 -39.71 -0.43 -2.22 15 18 C -0.05 -0.61 12.09 29.41 0.36 -0.25 15 19 O -0.17 -2.32 10.65 5.71 0.06 -2.26 15 20 C 0.11 1.65 8.97 29.42 0.26 1.91 15 21 C -0.07 -1.70 11.10 -17.02 -0.19 -1.89 15 22 N -0.25 -6.61 10.42 30.81 0.32 -6.29 15 23 H 0.28 6.69 8.31 -40.82 -0.34 6.35 15 24 H 0.15 2.93 8.06 -52.49 -0.42 2.50 15 25 H 0.41 5.87 8.96 -34.47 -0.31 5.56 15 26 H 0.16 1.78 8.06 -52.49 -0.42 1.35 15 27 H 0.21 1.46 8.06 -52.49 -0.42 1.04 15 28 H 0.23 3.11 7.83 -52.49 -0.41 2.70 15 29 H 0.15 3.03 4.23 -52.48 -0.22 2.81 15 LS Contribution 277.97 15.07 4.19 4.19 Total: -1.00 -33.89 277.97 -5.24 -39.12 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -1.76 Total: 10.36 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -1.18 Total: -24.71 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 1.13 Total: -47.15 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -1.97 Total: -40.82 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Atomic # 16 Polarization: 46.41 SS G_CDS: -0.62 Total: 45.79 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.89 -5.24 -39.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795304433.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.928 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds