Wall clock time and date at job start Tue Mar 31 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99520 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00347 * 3 2 1 7 7 C 1.37882 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14335 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.42076 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46499 * 109.46602 * 294.81113 * 10 9 7 12 12 C 1.34782 * 119.99602 * 184.79227 * 11 10 9 13 13 O 1.21273 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99710 * 180.02562 * 12 11 10 15 15 S 1.81396 * 109.47008 * 180.02562 * 14 12 11 16 16 C 1.81408 * 103.00041 * 179.97438 * 15 14 12 17 17 F 1.39899 * 109.46517 * 60.00345 * 16 15 14 18 18 F 1.39896 * 109.46651 * 179.97438 * 16 15 14 19 19 F 1.39896 * 109.46955 * 300.00120 * 16 15 14 20 20 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 21 21 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 22 22 H 0.97004 * 120.00506 * 5.00201 * 1 2 3 23 23 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 24 24 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 25 25 H 0.97004 * 120.00630 * 4.79957 * 11 10 9 26 26 H 1.09003 * 109.47069 * 300.00128 * 14 12 11 27 27 H 1.08998 * 109.47269 * 59.99690 * 14 12 11 28 28 H 1.08997 * 117.49622 * 359.97438 * 20 9 7 29 29 H 1.09000 * 117.49928 * 145.02150 * 20 9 7 30 30 H 1.08996 * 117.50254 * 214.97905 * 21 9 7 31 31 H 1.09005 * 117.49689 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2463 2.2510 12 6 2.1053 -3.7589 3.4964 13 8 1.0322 -3.9774 4.0174 14 6 3.3800 -4.0604 4.2416 15 16 2.9792 -4.7355 5.8769 16 6 4.6129 -5.0306 6.6082 17 9 5.3154 -3.8231 6.6825 18 9 4.4593 -5.5602 7.8939 19 9 5.3234 -5.9355 5.8123 20 6 1.5731 -3.5804 -0.9271 21 6 0.2453 -2.8219 -0.9976 22 1 -0.4851 0.8368 -0.0732 23 1 0.3750 -2.1615 2.0429 24 1 0.3014 -3.8500 1.4844 25 1 3.0164 -3.0718 1.8343 26 1 3.9647 -4.7898 3.6811 27 1 3.9582 -3.1438 4.3583 28 1 2.3246 -3.3505 -1.6824 29 1 1.5429 -4.6177 -0.5938 30 1 -0.6578 -3.3606 -0.7107 31 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563189.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:23 Heat of formation + Delta-G solvation = -154.596851 kcal Electronic energy + Delta-G solvation = -19682.058923 eV Core-core repulsion = 15869.199170 eV Total energy + Delta-G solvation = -3812.859753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.44448 -48.07633 -48.03290 -39.33809 -36.81671 -33.59926 -32.05956 -30.42485 -26.77642 -26.19116 -25.09334 -21.30180 -20.42857 -19.73537 -19.30181 -18.89849 -18.83872 -16.89738 -16.53453 -15.78528 -15.61210 -14.89731 -14.88660 -14.83836 -14.71028 -14.44665 -14.17049 -14.15849 -13.94794 -13.50474 -13.00793 -12.74330 -12.55175 -11.87389 -11.66690 -11.07383 -11.04356 -10.74247 -10.59511 -10.33406 -9.91179 -9.56210 -9.15792 -8.67495 -8.58495 -8.44237 -8.25187 -6.16543 -4.27282 -0.09835 1.38962 2.76990 2.81955 3.18955 3.28833 3.29583 3.45846 3.63704 3.64951 4.27424 4.72147 4.77683 5.00757 5.11415 5.27714 5.90126 6.22384 6.34692 6.41810 6.60234 6.69698 7.01031 7.03068 7.26598 7.43119 7.72088 7.93801 8.22910 8.48017 8.74822 9.40930 10.90494 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.003975 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.671973 B = 7042.171166 C = 7610.045302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.021 3.979 10 C 0.163 3.837 11 N -0.691 5.691 12 C 0.525 3.475 13 O -0.536 6.536 14 C -0.140 4.140 15 S -0.077 6.077 16 C 0.442 3.558 17 F -0.172 7.172 18 F -0.152 7.152 19 F -0.173 7.173 20 C -0.210 4.210 21 C -0.140 4.140 22 H 0.262 0.738 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.405 0.595 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -8.571 8.650 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.020 3.980 10 C 0.040 3.960 11 N -0.340 5.340 12 C 0.307 3.693 13 O -0.415 6.415 14 C -0.292 4.292 15 S 0.143 5.857 16 C 0.281 3.719 17 F -0.154 7.154 18 F -0.134 7.134 19 F -0.155 7.155 20 C -0.248 4.248 21 C -0.178 4.178 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.239 0.761 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.977 -8.784 9.547 14.730 hybrid contribution 2.245 1.268 -0.703 2.673 sum 9.222 -7.516 8.843 14.823 Atomic orbital electron populations 1.69988 1.05912 1.26933 1.48054 1.24995 0.94823 0.99041 0.94186 0.86573 0.80134 0.83768 0.77747 1.19697 1.20958 1.20885 1.20377 0.92672 0.88487 1.52494 0.92083 1.19053 0.99714 0.93473 0.85738 1.21127 0.83484 0.98317 0.93056 1.45890 1.12056 1.61890 1.14144 1.19206 0.88470 0.79047 0.82566 1.90740 1.29848 1.53591 1.67332 1.23862 1.03139 1.06833 0.95318 1.88863 0.96909 1.83340 1.16565 1.23319 0.92575 0.76222 0.79790 1.93313 1.81492 1.44425 1.96182 1.93237 1.95378 1.86409 1.38357 1.93305 1.81149 1.67973 1.73074 1.23032 1.00795 0.95517 1.05418 1.22474 0.90803 1.01271 1.03283 0.92799 0.90999 0.93710 0.76053 0.85662 0.85483 0.90298 0.91663 0.91737 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.33 12.65 55.43 0.70 -22.63 16 2 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 3 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.50 -12.23 8.59 -34.44 -0.30 -12.53 16 8 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 9 C 0.02 0.46 1.47 -155.66 -0.23 0.23 16 10 C 0.16 3.41 5.50 -4.04 -0.02 3.39 16 11 N -0.69 -11.86 5.48 -60.29 -0.33 -12.19 16 12 C 0.52 8.62 7.85 -10.98 -0.09 8.53 16 13 O -0.54 -10.85 15.86 5.56 0.09 -10.76 16 14 C -0.14 -1.64 6.39 36.01 0.23 -1.41 16 15 S -0.08 -0.97 20.91 -107.50 -2.25 -3.22 16 16 C 0.44 4.90 3.51 101.05 0.36 5.26 16 17 F -0.17 -1.92 17.34 2.25 0.04 -1.89 16 18 F -0.15 -1.72 17.36 2.25 0.04 -1.68 16 19 F -0.17 -1.87 17.34 2.25 0.04 -1.83 16 20 C -0.21 -4.11 9.96 -26.69 -0.27 -4.38 16 21 C -0.14 -3.06 9.14 -26.69 -0.24 -3.30 16 22 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 23 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 24 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 25 H 0.40 6.16 8.33 -40.82 -0.34 5.82 16 26 H 0.13 1.14 8.14 -51.92 -0.42 0.71 16 27 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -27.67 305.20 -6.01 -33.68 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.26 Total: 3.58 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.66 Total: -2.43 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.37 Total: -34.82 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.12 Total: -5.40 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.25 Total: -3.22 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.67 -6.01 -33.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563189.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.915 kcal (2) G-P(sol) polarization free energy of solvation -27.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds