Wall clock time and date at job start Tue Mar 31 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99520 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00347 * 3 2 1 7 7 C 1.37882 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14335 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.42076 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46499 * 109.46602 * 294.81113 * 10 9 7 12 12 C 1.34782 * 119.99602 * 184.79227 * 11 10 9 13 13 O 1.21273 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99710 * 180.02562 * 12 11 10 15 15 S 1.81396 * 109.47008 * 180.02562 * 14 12 11 16 16 C 1.81408 * 103.00041 * 179.97438 * 15 14 12 17 17 F 1.39899 * 109.46517 * 60.00345 * 16 15 14 18 18 F 1.39896 * 109.46651 * 179.97438 * 16 15 14 19 19 F 1.39896 * 109.46955 * 300.00120 * 16 15 14 20 20 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 21 21 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 22 22 H 0.97004 * 120.00506 * 5.00201 * 1 2 3 23 23 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 24 24 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 25 25 H 0.97004 * 120.00630 * 4.79957 * 11 10 9 26 26 H 1.09003 * 109.47069 * 300.00128 * 14 12 11 27 27 H 1.08998 * 109.47269 * 59.99690 * 14 12 11 28 28 H 1.08997 * 117.49622 * 359.97438 * 20 9 7 29 29 H 1.09000 * 117.49928 * 145.02150 * 20 9 7 30 30 H 1.08996 * 117.50254 * 214.97905 * 21 9 7 31 31 H 1.09005 * 117.49689 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2463 2.2510 12 6 2.1053 -3.7589 3.4964 13 8 1.0322 -3.9774 4.0174 14 6 3.3800 -4.0604 4.2416 15 16 2.9792 -4.7355 5.8769 16 6 4.6129 -5.0306 6.6082 17 9 5.3154 -3.8231 6.6825 18 9 4.4593 -5.5602 7.8939 19 9 5.3234 -5.9355 5.8123 20 6 1.5731 -3.5804 -0.9271 21 6 0.2453 -2.8219 -0.9976 22 1 -0.4851 0.8368 -0.0732 23 1 0.3750 -2.1615 2.0429 24 1 0.3014 -3.8500 1.4844 25 1 3.0164 -3.0718 1.8343 26 1 3.9647 -4.7898 3.6811 27 1 3.9582 -3.1438 4.3583 28 1 2.3246 -3.3505 -1.6824 29 1 1.5429 -4.6177 -0.5938 30 1 -0.6578 -3.3606 -0.7107 31 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797563189.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:22 Heat of formation + Delta-G solvation = -170.935486 kcal Electronic energy + Delta-G solvation = -19682.767419 eV Core-core repulsion = 15869.199170 eV Total energy + Delta-G solvation = -3813.568249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.32490 -48.96036 -48.90182 -40.74899 -38.48941 -35.10016 -33.95315 -31.56119 -28.00814 -27.59956 -26.79048 -22.95129 -21.73639 -21.28772 -20.49925 -19.76938 -19.75509 -18.39543 -17.92254 -17.15222 -16.88770 -16.53236 -16.13183 -15.80053 -15.75940 -15.54610 -15.32193 -15.05488 -15.03013 -14.93587 -14.37154 -14.28976 -13.63823 -13.48963 -13.33352 -12.91550 -12.85892 -12.31807 -12.00878 -11.66299 -11.45383 -11.17534 -10.94282 -10.44585 -10.10506 -9.93168 -9.56585 -8.08875 -6.23086 -1.03915 0.44323 1.42300 1.47306 1.48426 1.55131 1.93479 2.17308 2.43393 2.76318 2.76970 3.19735 3.44537 3.69351 3.86868 4.11162 4.24546 4.55488 4.65765 4.72945 4.98684 5.03863 5.30752 5.48976 5.56760 5.70094 5.79553 6.36904 6.57230 6.85657 7.17879 7.47520 8.98084 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.003975 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.671973 B = 7042.171166 C = 7610.045302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.259 1.259 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.502 4.502 8 H 0.067 0.933 9 C 0.001 3.999 10 C 0.179 3.821 11 N -0.687 5.687 12 C 0.525 3.475 13 O -0.578 6.578 14 C -0.127 4.127 15 S -0.113 6.113 16 C 0.459 3.541 17 F -0.170 7.170 18 F -0.153 7.153 19 F -0.168 7.168 20 C -0.175 4.175 21 C -0.156 4.156 22 H 0.258 0.742 23 H 0.031 0.969 24 H 0.044 0.956 25 H 0.417 0.583 26 H 0.160 0.840 27 H 0.153 0.847 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.180 -9.306 8.800 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.183 1.183 5 H -0.213 1.213 6 H -0.216 1.216 7 C -0.540 4.540 8 H 0.085 0.915 9 C 0.000 4.000 10 C 0.055 3.945 11 N -0.336 5.336 12 C 0.309 3.691 13 O -0.459 6.459 14 C -0.277 4.277 15 S 0.107 5.893 16 C 0.297 3.703 17 F -0.152 7.152 18 F -0.134 7.134 19 F -0.149 7.149 20 C -0.212 4.212 21 C -0.194 4.194 22 H 0.067 0.933 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.254 0.746 26 H 0.178 0.822 27 H 0.170 0.830 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.356 -9.527 9.689 16.498 hybrid contribution 1.525 1.451 -0.735 2.229 sum 10.880 -8.076 8.954 16.241 Atomic orbital electron populations 1.70112 1.07276 1.27220 1.49946 1.25685 0.95405 1.02020 0.94463 0.85677 0.79685 0.80298 0.76984 1.18265 1.21328 1.21648 1.20715 0.93090 0.89353 1.50842 0.91452 1.19095 1.00290 0.94058 0.86544 1.20642 0.84757 0.96759 0.92368 1.45705 1.11282 1.62099 1.14563 1.19847 0.89611 0.77591 0.82008 1.90730 1.32073 1.55004 1.68132 1.23783 1.00603 1.09045 0.94299 1.89066 0.98845 1.83633 1.17763 1.22908 0.91553 0.76250 0.79556 1.93321 1.81282 1.44388 1.96167 1.93241 1.95330 1.86425 1.38425 1.93318 1.80869 1.67817 1.72945 1.23015 0.98746 0.95951 1.03509 1.22392 0.92239 1.01873 1.02886 0.93269 0.95106 0.93818 0.74648 0.82196 0.82952 0.89648 0.89149 0.91295 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.54 12.65 21.45 0.27 -49.27 16 2 C 0.03 1.27 5.43 84.66 0.46 1.73 16 3 Si 0.95 40.46 29.54 68.60 2.03 42.49 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.50 -24.00 8.59 25.60 0.22 -23.78 16 8 H 0.07 3.07 7.82 -2.91 -0.02 3.05 16 9 C 0.00 0.04 1.47 -52.93 -0.08 -0.04 16 10 C 0.18 7.47 5.50 86.38 0.48 7.95 16 11 N -0.69 -22.51 5.48 -463.06 -2.54 -25.04 16 12 C 0.52 16.41 7.85 87.66 0.69 17.10 16 13 O -0.58 -23.25 15.86 -3.01 -0.05 -23.30 16 14 C -0.13 -2.60 6.39 71.24 0.46 -2.14 16 15 S -0.11 -2.66 20.91 -56.49 -1.18 -3.84 16 16 C 0.46 9.06 3.51 113.37 0.40 9.46 16 17 F -0.17 -3.33 17.34 44.97 0.78 -2.55 16 18 F -0.15 -3.16 17.36 44.97 0.78 -2.38 16 19 F -0.17 -3.14 17.34 44.97 0.78 -2.36 16 20 C -0.18 -6.46 9.96 30.62 0.30 -6.15 16 21 C -0.16 -6.77 9.14 30.62 0.28 -6.49 16 22 H 0.26 13.65 8.32 -92.71 -0.77 12.88 16 23 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 25 H 0.42 11.59 8.33 -92.71 -0.77 10.82 16 26 H 0.16 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.06 3.04 8.14 -2.38 -0.02 3.02 16 Total: -1.00 -59.86 305.20 4.47 -55.39 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.40 Total: 13.23 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 3.20 Total: -2.37 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -2.27 Total: -74.31 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 9 Polarization: -9.63 SS G_CDS: 2.34 Total: -7.29 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -1.18 Total: -3.84 kcal Total: -59.86 4.47 -55.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563189.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.545 kcal (2) G-P(sol) polarization free energy of solvation -59.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds