Wall clock time and date at job start Tue Mar 31 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99802 * 2 1 4 4 H 1.48506 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47412 * 300.00370 * 3 2 1 6 6 H 1.48497 * 109.47461 * 60.00242 * 3 2 1 7 7 C 1.38797 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99987 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99522 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99757 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47238 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47365 * 180.02562 * 11 10 9 13 13 O 1.45193 * 109.47120 * 180.02562 * 12 11 10 14 14 C 1.34670 * 116.99834 * 179.97438 * 13 12 11 15 15 O 1.21426 * 120.00155 * 359.97438 * 14 13 12 16 16 C 1.48061 * 119.99994 * 179.97438 * 14 13 12 17 17 C 1.40011 * 120.89853 * 359.97438 * 16 14 13 18 18 C 1.37978 * 119.12957 * 180.02562 * 17 16 14 19 19 N 1.31905 * 120.98322 * 0.02562 * 18 17 16 20 20 C 1.32177 * 121.98182 * 359.97438 * 19 18 17 21 21 O 1.35688 * 119.61624 * 180.28333 * 20 19 18 22 22 C 1.38895 * 120.75723 * 359.97438 * 20 19 18 23 23 H 0.97005 * 119.99957 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46971 * 59.99499 * 10 9 7 25 25 H 1.09001 * 109.47178 * 300.00080 * 10 9 7 26 26 H 1.08998 * 109.47563 * 59.99844 * 11 10 9 27 27 H 1.09001 * 109.47086 * 300.00118 * 11 10 9 28 28 H 1.08998 * 109.47059 * 59.99349 * 12 11 10 29 29 H 1.08996 * 109.46528 * 299.99847 * 12 11 10 30 30 H 1.08001 * 120.43284 * 359.97438 * 17 16 14 31 31 H 1.07997 * 119.50761 * 179.97438 * 18 17 16 32 32 H 0.96704 * 113.99257 * 269.72070 * 21 20 19 33 33 H 1.07998 * 120.52608 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9794 -5.3242 -0.0030 12 6 3.1515 -6.3077 -0.0037 13 8 2.6423 -7.6674 -0.0051 14 6 3.5516 -8.6607 -0.0064 15 8 4.7372 -8.3985 -0.0069 16 6 3.1057 -10.0726 -0.0074 17 6 1.7435 -10.3964 -0.0064 18 6 1.3688 -11.7243 -0.0068 19 7 2.2727 -12.6849 -0.0076 20 6 3.5690 -12.4265 -0.0085 21 8 4.4572 -13.4522 -0.0151 22 6 4.0322 -11.1170 -0.0092 23 1 -0.4850 0.8401 0.0004 24 1 3.1252 -3.7316 0.8874 25 1 3.1238 -3.7309 -0.8925 26 1 1.3703 -5.4836 -0.8928 27 1 1.3712 -5.4849 0.8871 28 1 3.7602 -6.1481 0.8863 29 1 3.7599 -6.1470 -0.8936 30 1 0.9960 -9.6169 -0.0045 31 1 0.3197 -11.9810 -0.0056 32 1 4.7194 -13.7510 0.8665 33 1 5.0921 -10.9102 -0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805504396.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:51 Heat of formation + Delta-G solvation = -100.379056 kcal Electronic energy + Delta-G solvation = -18183.490796 eV Core-core repulsion = 14914.838844 eV Total energy + Delta-G solvation = -3268.651952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25369 -40.18177 -37.54695 -36.90859 -33.75293 -33.10014 -32.48056 -30.79991 -27.17270 -25.68571 -24.95708 -23.89937 -21.71351 -21.41484 -19.37869 -18.05958 -17.48689 -17.26144 -16.81081 -16.64575 -16.17172 -15.72201 -14.86623 -14.84855 -14.68418 -14.36001 -13.66615 -13.48629 -12.93347 -12.88158 -12.56309 -12.24547 -12.17441 -11.44728 -11.24410 -11.10552 -11.07467 -10.89651 -10.69375 -10.52555 -10.38812 -10.04222 -9.67930 -9.49482 -9.12188 -8.40548 -6.61139 -6.28786 -4.00123 0.05951 0.45570 2.14714 2.20455 3.01630 3.17942 3.18578 3.26891 3.29454 3.47780 4.09257 4.15978 4.24456 4.42256 4.45637 4.86958 5.00501 5.06110 5.08034 5.11593 5.18884 5.32532 5.39154 5.50898 5.68947 5.79715 5.88527 6.03342 6.24475 6.36968 6.58583 6.94202 7.33146 7.40078 7.55698 8.31228 9.17905 10.79386 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.055532 B = 0.002352 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.095865 B =11899.683477 C =12375.495009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.346 6.346 14 C 0.507 3.493 15 O -0.495 6.495 16 C -0.058 4.058 17 C -0.126 4.126 18 C 0.119 3.881 19 N -0.483 5.483 20 C 0.305 3.695 21 O -0.477 6.477 22 C -0.126 4.126 23 H 0.268 0.732 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.403 0.597 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -23.056 1.710 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.262 6.262 14 C 0.350 3.650 15 O -0.383 6.383 16 C -0.067 4.067 17 C -0.146 4.146 18 C -0.037 4.037 19 N -0.203 5.203 20 C 0.127 3.873 21 O -0.284 6.284 22 C -0.147 4.147 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.177 0.823 31 H 0.190 0.810 32 H 0.261 0.739 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.550 -23.815 1.108 24.103 hybrid contribution 2.367 2.149 0.460 3.229 sum 5.916 -21.666 1.568 22.514 Atomic orbital electron populations 1.70025 1.05928 1.27351 1.47146 1.25026 0.95110 0.99167 0.94501 0.86089 0.79645 0.81718 0.77930 1.19577 1.20523 1.20522 1.22731 0.94617 0.90610 1.58655 0.90768 1.84658 1.08689 0.99288 1.96887 1.23179 1.03533 0.96232 1.03416 1.21301 0.96330 0.91539 1.04460 1.23394 0.98058 0.75756 1.02957 1.86498 1.39401 1.17069 1.83209 1.20908 0.84346 0.86233 0.73493 1.90858 1.17894 1.84818 1.44745 1.19435 0.94300 0.90462 1.02501 1.22631 0.95707 0.99132 0.97143 1.22641 0.99105 0.87347 0.94651 1.67066 1.02315 1.39323 1.11568 1.18942 0.86252 0.85754 0.96399 1.84822 1.58593 1.50767 1.34252 1.22274 1.02144 0.91236 0.99079 0.92268 0.91676 0.91676 0.90196 0.90212 0.90793 0.90799 0.82254 0.80995 0.73859 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 2 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.54 9.50 30.94 0.29 -14.25 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.12 -3.12 21.44 -107.50 -2.30 -5.43 16 10 C -0.12 -2.20 5.67 37.15 0.21 -1.99 16 11 C -0.10 -1.49 5.60 -26.73 -0.15 -1.64 16 12 C 0.07 0.97 5.47 37.16 0.20 1.18 16 13 O -0.35 -4.33 9.57 -40.41 -0.39 -4.72 16 14 C 0.51 6.25 7.92 34.76 0.28 6.53 16 15 O -0.50 -7.28 16.23 -19.21 -0.31 -7.59 16 16 C -0.06 -0.57 5.91 -104.69 -0.62 -1.19 16 17 C -0.13 -0.98 9.70 -39.01 -0.38 -1.36 16 18 C 0.12 0.87 11.17 -17.62 -0.20 0.67 16 19 N -0.48 -4.56 10.36 -13.38 -0.14 -4.70 16 20 C 0.31 2.77 7.74 -17.16 -0.13 2.63 16 21 O -0.48 -3.61 13.56 -18.77 -0.25 -3.87 16 22 C -0.13 -1.16 9.61 -38.82 -0.37 -1.53 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 25 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.16 1.01 7.71 -52.49 -0.40 0.60 16 31 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 32 H 0.40 0.94 9.06 45.56 0.41 1.36 16 33 H 0.16 1.34 7.74 -52.49 -0.41 0.94 16 LS Contribution 316.56 15.07 4.77 4.77 Total: -1.00 -33.98 316.56 -6.78 -40.76 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -2.90 Total: -1.59 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.96 Total: -9.06 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 0.60 Total: -29.48 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.95 Total: -16.18 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.30 Total: -5.43 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.98 -6.78 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805504396.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.619 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds