Wall clock time and date at job start Tue Mar 31 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99802 * 2 1 4 4 H 1.48506 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47412 * 300.00370 * 3 2 1 6 6 H 1.48497 * 109.47461 * 60.00242 * 3 2 1 7 7 C 1.38797 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99987 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99522 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99757 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47238 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47365 * 180.02562 * 11 10 9 13 13 O 1.45193 * 109.47120 * 180.02562 * 12 11 10 14 14 C 1.34670 * 116.99834 * 179.97438 * 13 12 11 15 15 O 1.21426 * 120.00155 * 359.97438 * 14 13 12 16 16 C 1.48061 * 119.99994 * 179.97438 * 14 13 12 17 17 C 1.40011 * 120.89853 * 359.97438 * 16 14 13 18 18 C 1.37978 * 119.12957 * 180.02562 * 17 16 14 19 19 N 1.31905 * 120.98322 * 0.02562 * 18 17 16 20 20 C 1.32177 * 121.98182 * 359.97438 * 19 18 17 21 21 O 1.35688 * 119.61624 * 180.28333 * 20 19 18 22 22 C 1.38895 * 120.75723 * 359.97438 * 20 19 18 23 23 H 0.97005 * 119.99957 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46971 * 59.99499 * 10 9 7 25 25 H 1.09001 * 109.47178 * 300.00080 * 10 9 7 26 26 H 1.08998 * 109.47563 * 59.99844 * 11 10 9 27 27 H 1.09001 * 109.47086 * 300.00118 * 11 10 9 28 28 H 1.08998 * 109.47059 * 59.99349 * 12 11 10 29 29 H 1.08996 * 109.46528 * 299.99847 * 12 11 10 30 30 H 1.08001 * 120.43284 * 359.97438 * 17 16 14 31 31 H 1.07997 * 119.50761 * 179.97438 * 18 17 16 32 32 H 0.96704 * 113.99257 * 269.72070 * 21 20 19 33 33 H 1.07998 * 120.52608 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9794 -5.3242 -0.0030 12 6 3.1515 -6.3077 -0.0037 13 8 2.6423 -7.6674 -0.0051 14 6 3.5516 -8.6607 -0.0064 15 8 4.7372 -8.3985 -0.0069 16 6 3.1057 -10.0726 -0.0074 17 6 1.7435 -10.3964 -0.0064 18 6 1.3688 -11.7243 -0.0068 19 7 2.2727 -12.6849 -0.0076 20 6 3.5690 -12.4265 -0.0085 21 8 4.4572 -13.4522 -0.0151 22 6 4.0322 -11.1170 -0.0092 23 1 -0.4850 0.8401 0.0004 24 1 3.1252 -3.7316 0.8874 25 1 3.1238 -3.7309 -0.8925 26 1 1.3703 -5.4836 -0.8928 27 1 1.3712 -5.4849 0.8871 28 1 3.7602 -6.1481 0.8863 29 1 3.7599 -6.1470 -0.8936 30 1 0.9960 -9.6169 -0.0045 31 1 0.3197 -11.9810 -0.0056 32 1 4.7194 -13.7510 0.8665 33 1 5.0921 -10.9102 -0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805504396.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:51 Heat of formation + Delta-G solvation = -124.988429 kcal Electronic energy + Delta-G solvation = -18184.557939 eV Core-core repulsion = 14914.838844 eV Total energy + Delta-G solvation = -3269.719095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.05119 -41.02252 -38.17984 -37.91550 -34.98687 -34.59226 -33.89607 -31.42226 -28.44284 -27.63522 -25.97208 -24.52736 -22.83782 -22.44361 -20.16235 -19.52739 -18.84497 -18.07424 -17.85020 -17.39978 -16.90184 -16.84421 -16.53587 -16.10617 -15.98383 -15.25040 -14.95796 -14.43246 -14.29252 -14.01021 -13.83137 -13.27473 -13.11106 -12.97090 -12.82035 -12.62687 -12.44645 -12.42261 -12.08002 -11.57847 -11.50567 -11.22177 -11.16222 -10.68790 -10.35792 -10.09382 -8.67726 -8.38674 -6.14649 -0.68187 -0.14580 1.15227 1.29427 1.35404 1.38429 1.50477 1.77258 2.26412 2.43908 2.66288 2.96110 3.21272 3.34292 3.59541 3.77003 3.83548 3.84090 3.94015 4.12887 4.26528 4.31769 4.42878 4.58320 4.62808 4.68602 4.89385 5.01639 5.05071 5.28652 5.35184 5.40237 6.17722 6.42018 6.50554 6.76480 7.04354 8.70757 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.055532 B = 0.002352 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.095865 B =11899.683477 C =12375.495009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.074 0.926 9 S -0.183 6.183 10 C -0.093 4.093 11 C -0.086 4.086 12 C 0.080 3.920 13 O -0.342 6.342 14 C 0.511 3.489 15 O -0.524 6.524 16 C -0.073 4.073 17 C -0.119 4.119 18 C 0.126 3.874 19 N -0.502 5.502 20 C 0.303 3.697 21 O -0.487 6.487 22 C -0.131 4.131 23 H 0.272 0.728 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.176 0.824 31 H 0.207 0.793 32 H 0.424 0.576 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.019 -23.749 1.811 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.045 5.955 10 C -0.242 4.242 11 C -0.124 4.124 12 C 0.005 3.995 13 O -0.258 6.258 14 C 0.356 3.644 15 O -0.414 6.414 16 C -0.082 4.082 17 C -0.138 4.138 18 C -0.031 4.031 19 N -0.222 5.222 20 C 0.125 3.875 21 O -0.297 6.297 22 C -0.153 4.153 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.194 0.806 31 H 0.224 0.776 32 H 0.285 0.715 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.853 -24.536 1.224 24.867 hybrid contribution 2.267 2.217 0.439 3.201 sum 6.120 -22.318 1.663 23.202 Atomic orbital electron populations 1.70147 1.07600 1.28539 1.47958 1.26048 0.96046 1.03074 0.93790 0.84973 0.78415 0.76751 0.78277 1.18750 1.19732 1.19693 1.23082 0.94826 0.91970 1.58820 0.90817 1.84613 1.13031 1.00780 1.97053 1.23073 1.00823 0.96579 1.03712 1.21112 0.96920 0.89570 1.04806 1.23153 0.96917 0.76027 1.03393 1.86477 1.39376 1.16707 1.83263 1.21306 0.83877 0.86879 0.72383 1.90844 1.18996 1.85238 1.46287 1.19398 0.95506 0.88977 1.04272 1.22836 0.94979 0.99963 0.96066 1.23208 1.00278 0.86684 0.92919 1.67159 1.02641 1.40214 1.12162 1.18989 0.86468 0.85870 0.96177 1.84770 1.58385 1.50332 1.36251 1.22277 1.02122 0.91345 0.99525 0.91912 0.91286 0.91359 0.89945 0.89865 0.90367 0.90515 0.80645 0.77645 0.71451 0.82734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.67 13.22 21.65 0.29 -53.38 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.43 9.50 67.95 0.65 -29.79 16 8 H 0.07 4.02 7.80 -2.91 -0.02 3.99 16 9 S -0.18 -9.39 21.44 -56.49 -1.21 -10.60 16 10 C -0.09 -3.49 5.67 71.98 0.41 -3.08 16 11 C -0.09 -2.49 5.60 30.59 0.17 -2.32 16 12 C 0.08 2.02 5.47 71.98 0.39 2.42 16 13 O -0.34 -8.05 9.57 -55.79 -0.53 -8.58 16 14 C 0.51 12.10 7.92 70.43 0.56 12.66 16 15 O -0.52 -15.17 16.23 20.08 0.33 -14.84 16 16 C -0.07 -1.35 5.91 -19.91 -0.12 -1.47 16 17 C -0.12 -1.60 9.70 22.64 0.22 -1.38 16 18 C 0.13 1.51 11.17 84.62 0.94 2.45 16 19 N -0.50 -8.54 10.36 -309.13 -3.20 -11.75 16 20 C 0.30 5.14 7.74 84.80 0.66 5.79 16 21 O -0.49 -6.82 13.56 -90.06 -1.22 -8.04 16 22 C -0.13 -2.32 9.61 22.76 0.22 -2.10 16 23 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 24 H 0.07 2.54 8.14 -2.40 -0.02 2.52 16 25 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.18 1.74 7.71 -2.91 -0.02 1.72 16 31 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 32 H 0.42 1.47 9.06 -74.05 -0.67 0.80 16 33 H 0.15 2.66 7.74 -2.91 -0.02 2.64 16 Total: -1.00 -72.87 316.56 1.51 -71.36 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 0.47 Total: 6.01 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 4.57 Total: -15.49 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -2.92 Total: -65.12 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -1.43 Total: -31.46 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -9.39 SS G_CDS: -1.21 Total: -10.60 kcal Total: -72.87 1.51 -71.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805504396.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.628 kcal (2) G-P(sol) polarization free energy of solvation -72.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds