Wall clock time and date at job start Tue Mar 31 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34716 * 116.99831 * 2 1 4 4 O 1.21483 * 120.00198 * 0.02562 * 3 2 1 5 5 C 1.47682 * 120.00201 * 179.97438 * 3 2 1 6 6 C 1.39832 * 120.05488 * 359.97438 * 5 3 2 7 7 C 1.37959 * 120.17702 * 180.02562 * 6 5 3 8 8 C 1.38295 * 120.29092 * 359.97438 * 7 6 5 9 9 Cl 1.73603 * 119.94044 * 180.27432 * 8 7 6 10 10 C 1.39905 * 120.11443 * 359.97438 * 8 7 6 11 11 C 1.47676 * 120.08435 * 180.02562 * 10 8 7 12 12 O 1.21596 * 120.00542 * 359.97438 * 11 10 8 13 13 N 1.34777 * 119.99523 * 180.02562 * 11 10 8 14 14 C 1.36882 * 119.99893 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00142 * 0.02562 * 14 13 11 16 16 C 1.39048 * 120.00082 * 179.97438 * 14 13 11 17 17 N 1.31365 * 119.99986 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99985 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47006 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46995 * 120.00246 * 18 16 14 21 21 H 1.48502 * 109.46707 * 240.00297 * 18 16 14 22 22 C 1.39336 * 120.05994 * 180.02562 * 5 3 2 23 23 H 1.09003 * 109.46624 * 60.00130 * 1 2 3 24 24 H 1.08995 * 109.46834 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47010 * 299.99989 * 1 2 3 26 26 H 1.07998 * 119.91418 * 0.02562 * 6 5 3 27 27 H 1.07999 * 119.85110 * 179.97438 * 7 6 5 28 28 H 0.96996 * 120.00256 * 359.97438 * 13 11 10 29 29 H 0.96993 * 120.00292 * 180.02562 * 17 16 14 30 30 H 1.08001 * 120.14230 * 359.97438 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5384 1.2777 0.0006 6 6 4.3012 0.1058 0.0017 7 6 5.6790 0.1751 0.0027 8 6 6.3157 1.4028 0.0022 9 17 8.0500 1.4795 -0.0036 10 6 5.5644 2.5831 0.0000 11 6 6.2450 3.8937 -0.0011 12 8 7.4597 3.9482 0.0003 13 7 5.5195 5.0296 -0.0027 14 6 6.1502 6.2445 -0.0032 15 1 7.2291 6.2928 -0.0027 16 6 5.4018 7.4164 -0.0053 17 7 4.0895 7.3576 -0.0063 18 14 6.2625 9.0743 -0.0068 19 1 7.7332 8.8684 -0.0046 20 1 5.8703 9.8345 -1.2205 21 1 5.8683 9.8376 1.2045 22 6 4.1722 2.5186 0.0011 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8104 -0.8562 0.0017 27 1 6.2630 -0.7333 0.0040 28 1 4.5505 4.9862 -0.0034 29 1 3.5674 8.1750 -0.0082 30 1 3.5871 3.4264 0.0007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810560675.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:03 Heat of formation + Delta-G solvation = -113.920767 kcal Electronic energy + Delta-G solvation = -19194.026521 eV Core-core repulsion = 15786.910556 eV Total energy + Delta-G solvation = -3407.115966 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76168 -40.72334 -39.08032 -37.60734 -37.30007 -36.07270 -33.61483 -32.48692 -32.18074 -28.64856 -27.32558 -25.07004 -24.73119 -22.39025 -21.27627 -20.25079 -19.09619 -18.29811 -17.57353 -17.43300 -17.40106 -16.62050 -16.36741 -15.71892 -15.55970 -15.43278 -14.78402 -14.52298 -14.47063 -14.00306 -13.59290 -13.41608 -13.12437 -12.96290 -12.73634 -12.48398 -12.41102 -12.15311 -11.98259 -11.82456 -11.75639 -11.59185 -10.25655 -10.17447 -10.12128 -9.95142 -8.56364 -6.01017 -0.67613 -0.18239 1.12503 1.19235 1.39899 1.40339 1.55335 1.56638 2.05159 2.24610 2.63126 2.97262 3.24422 3.53886 3.62002 3.78429 4.02165 4.11972 4.34410 4.37335 4.44222 4.65374 4.70204 4.83993 4.94373 5.06398 5.22809 5.34047 5.45840 5.89343 6.46609 6.59262 7.01049 7.39823 7.96135 8.61101 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.005786 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.267368 B = 4837.697546 C = 6790.818033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.345 6.345 3 C 0.515 3.485 4 O -0.534 6.534 5 C -0.136 4.136 6 C -0.016 4.016 7 C -0.114 4.114 8 C 0.024 3.976 9 Cl -0.037 7.037 10 C -0.130 4.130 11 C 0.461 3.539 12 O -0.600 6.600 13 N -0.556 5.556 14 C -0.329 4.329 15 H 0.090 0.910 16 C -0.013 4.013 17 N -0.914 5.914 18 Si 1.001 2.999 19 H -0.268 1.268 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.034 4.034 23 H 0.061 0.939 24 H 0.143 0.857 25 H 0.061 0.939 26 H 0.193 0.807 27 H 0.187 0.813 28 H 0.393 0.607 29 H 0.282 0.718 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.824 -18.306 0.007 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.361 3.639 4 O -0.425 6.425 5 C -0.137 4.137 6 C -0.035 4.035 7 C -0.132 4.132 8 C -0.005 4.005 9 Cl -0.008 7.008 10 C -0.134 4.134 11 C 0.249 3.751 12 O -0.487 6.487 13 N -0.191 5.191 14 C -0.459 4.459 15 H 0.108 0.892 16 C -0.214 4.214 17 N -0.554 5.554 18 Si 0.824 3.176 19 H -0.192 1.192 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.054 4.054 23 H 0.079 0.921 24 H 0.161 0.839 25 H 0.080 0.920 26 H 0.210 0.790 27 H 0.204 0.796 28 H 0.228 0.772 29 H 0.091 0.909 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.249 -17.792 0.007 18.550 hybrid contribution -0.344 1.473 -0.002 1.513 sum -5.593 -16.319 0.005 17.250 Atomic orbital electron populations 1.23653 0.73998 1.06240 1.02601 1.86502 1.25343 1.30487 1.83755 1.21102 0.88839 0.81876 0.72091 1.90890 1.67335 1.37380 1.46930 1.19067 0.89670 0.94562 1.10391 1.21895 0.92358 0.98602 0.90622 1.21437 0.94846 0.96053 1.00846 1.21592 0.86390 0.94187 0.98298 1.98403 1.07914 1.98696 1.95764 1.19823 0.93189 0.93779 1.06638 1.18165 0.87429 0.84227 0.85245 1.90662 1.13696 1.87186 1.57129 1.41975 1.09321 1.05071 1.62775 1.19862 0.93572 0.83045 1.49391 0.89188 1.26246 0.96083 1.03371 0.95686 1.69682 1.05809 1.31299 1.48616 0.84755 0.78254 0.76195 0.78438 1.19221 1.19427 1.19439 1.21307 0.92343 0.98260 0.93456 0.92058 0.83906 0.92050 0.78964 0.79587 0.77171 0.90874 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.34 -6.96 9.80 -56.26 -0.55 -7.51 16 3 C 0.52 14.45 7.89 70.32 0.56 15.01 16 4 O -0.53 -19.10 16.13 19.89 0.32 -18.78 16 5 C -0.14 -3.80 5.87 -20.13 -0.12 -3.91 16 6 C -0.02 -0.32 9.61 22.59 0.22 -0.10 16 7 C -0.11 -2.46 9.80 22.22 0.22 -2.24 16 8 C 0.02 0.79 6.36 22.69 0.14 0.93 16 9 Cl -0.04 -1.31 25.99 -2.72 -0.07 -1.39 16 10 C -0.13 -5.20 5.87 -20.11 -0.12 -5.32 16 11 C 0.46 23.44 7.71 86.74 0.67 24.11 16 12 O -0.60 -33.27 13.52 -4.02 -0.05 -33.32 16 13 N -0.56 -30.21 5.23 -309.77 -1.62 -31.83 16 14 C -0.33 -19.04 9.68 84.10 0.81 -18.22 16 15 H 0.09 5.44 7.15 -2.91 -0.02 5.42 16 16 C -0.01 -0.71 5.50 84.96 0.47 -0.24 16 17 N -0.91 -50.78 13.05 21.68 0.28 -50.49 16 18 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 C -0.03 -1.22 9.08 22.81 0.21 -1.01 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.19 2.09 7.60 -2.91 -0.02 2.07 16 27 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 28 H 0.39 20.85 5.92 -92.71 -0.55 20.31 16 29 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.13 5.13 5.98 -2.91 -0.02 5.11 16 Total: -1.00 -72.58 289.96 5.25 -67.33 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.66 Total: 20.21 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 4.25 Total: 10.59 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.34 Total: -82.32 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -0.29 Total: -59.61 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.07 Total: -1.39 kcal Total: -72.58 5.25 -67.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810560675.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.587 kcal (2) G-P(sol) polarization free energy of solvation -72.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds