Wall clock time and date at job start Tue Mar 31 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99890 * 2 1 4 4 H 1.48499 * 109.47149 * 239.99713 * 3 2 1 5 5 H 1.48499 * 109.47023 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46776 * 119.99755 * 3 2 1 7 7 C 1.37877 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47247 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47089 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99777 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99651 * 179.97438 * 11 10 9 14 14 S 1.65601 * 119.99624 * 179.97438 * 13 11 10 15 15 O 1.42098 * 106.40290 * 311.45976 * 14 13 11 16 16 O 1.42107 * 106.39817 * 178.54010 * 14 13 11 17 17 C 1.76199 * 107.21620 * 65.00223 * 14 13 11 18 18 C 1.38237 * 119.99920 * 90.00183 * 17 14 13 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 14 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00031 * 269.97364 * 17 14 13 23 23 H 0.97005 * 120.00140 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47101 * 60.00181 * 9 7 2 25 25 H 1.09004 * 109.47220 * 300.00213 * 9 7 2 26 26 H 1.08994 * 109.46935 * 60.00018 * 10 9 7 27 27 H 1.09004 * 109.46731 * 299.99957 * 10 9 7 28 28 H 0.97000 * 120.00189 * 0.02562 * 13 11 10 29 29 H 1.08005 * 120.00088 * 359.96860 * 18 17 14 30 30 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 31 31 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 32 32 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 33 33 H 1.07999 * 119.99990 * 0.02562 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2790 -4.9671 -0.0011 13 7 2.1657 -6.1344 -0.0018 14 16 1.3377 -7.5685 -0.0019 15 8 0.3558 -7.4650 1.0202 16 8 2.3173 -8.5973 -0.0373 17 6 0.4603 -7.6640 -1.5269 18 6 1.0556 -8.2440 -2.6316 19 6 0.3674 -8.3184 -3.8281 20 6 -0.9164 -7.8140 -3.9198 21 6 -1.5098 -7.2297 -2.8164 22 6 -0.8235 -7.1596 -1.6185 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8906 28 1 3.1357 -6.1344 -0.0015 29 1 2.0586 -8.6380 -2.5600 30 1 0.8326 -8.7711 -4.6913 31 1 -1.4541 -7.8726 -4.8546 32 1 -2.5111 -6.8317 -2.8892 33 1 -1.2885 -6.7066 -0.7554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813059197.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:25 Heat of formation + Delta-G solvation = -94.336752 kcal Electronic energy + Delta-G solvation = -19765.754748 eV Core-core repulsion = 16497.364810 eV Total energy + Delta-G solvation = -3268.389938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.72318 -39.17869 -37.27024 -35.95574 -34.24852 -33.61522 -31.46097 -31.15914 -31.05356 -26.05326 -23.37970 -22.88048 -22.61424 -20.36531 -19.68548 -18.39225 -17.73245 -17.17972 -16.22804 -16.04317 -15.56873 -15.25119 -14.63969 -14.60513 -14.52140 -13.92599 -13.64196 -13.19198 -12.78651 -12.69068 -12.42325 -12.20705 -12.15832 -12.05734 -11.39140 -11.31930 -11.03389 -10.96620 -10.69070 -10.52210 -10.08883 -10.00388 -9.63678 -9.44243 -9.19707 -9.15426 -8.39474 -6.03405 -4.08520 0.14929 0.69060 1.17941 2.46326 2.78265 3.30456 3.35660 3.36238 3.37199 3.65810 4.21950 4.40822 4.66043 4.73822 4.84340 4.89479 5.16356 5.23060 5.32024 5.34948 5.53674 5.79299 5.96531 6.00497 6.01905 6.07877 6.22139 6.57720 6.69313 6.90258 7.63368 7.71973 7.87572 7.96027 8.31303 8.98476 9.55709 11.07380 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022611 B = 0.004371 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.035502 B = 6404.062332 C = 7010.775952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.033 3.967 10 C -0.131 4.131 11 C 0.529 3.471 12 O -0.485 6.485 13 N -1.058 6.058 14 S 2.677 3.323 15 O -0.932 6.932 16 O -0.956 6.956 17 C -0.675 4.675 18 C -0.023 4.023 19 C -0.149 4.149 20 C -0.062 4.062 21 C -0.143 4.143 22 C 0.005 3.995 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.028 0.972 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.432 0.568 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -16.556 -6.791 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.173 4.173 11 C 0.318 3.682 12 O -0.355 6.355 13 N -0.825 5.825 14 S 2.770 3.230 15 O -0.922 6.922 16 O -0.946 6.946 17 C -0.763 4.763 18 C -0.042 4.042 19 C -0.167 4.167 20 C -0.080 4.080 21 C -0.162 4.162 22 C -0.014 4.014 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.268 0.732 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.852 -17.018 -6.110 18.176 hybrid contribution 0.774 1.139 -0.785 1.585 sum 2.626 -15.879 -6.896 17.509 Atomic orbital electron populations 1.69977 1.06075 1.26869 1.49782 1.25013 0.94832 0.99276 0.95122 0.86630 0.79537 0.83047 0.78584 1.20240 1.21263 1.20187 1.21128 0.92950 0.90803 1.51987 0.92487 1.18991 0.93187 0.89329 0.98992 1.22060 1.01042 0.90561 1.03601 1.21725 0.88617 0.85933 0.71933 1.90807 1.13534 1.86755 1.44370 1.55195 1.21612 1.23644 1.82031 1.02509 0.73676 0.72409 0.74392 1.93637 1.60088 1.85052 1.53428 1.93603 1.60201 1.53506 1.87319 1.30615 1.09045 1.15585 1.21077 1.20930 0.99273 0.92626 0.91419 1.21244 0.95480 1.02099 0.97915 1.21527 0.94692 0.93320 0.98479 1.21380 1.01085 1.00686 0.93013 1.21188 0.91433 0.89952 0.98875 0.92786 0.95560 0.95377 0.88960 0.89067 0.73154 0.84332 0.85089 0.85247 0.84798 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 10 C -0.13 -2.38 5.64 -27.88 -0.16 -2.54 16 11 C 0.53 9.15 7.66 -10.98 -0.08 9.07 16 12 O -0.48 -10.04 13.18 -11.50 -0.15 -10.20 16 13 N -1.06 -13.78 5.70 31.22 0.18 -13.60 16 14 S 2.68 38.29 5.40 -107.50 -0.58 37.71 16 15 O -0.93 -16.76 16.23 -64.60 -1.05 -17.80 16 16 O -0.96 -13.86 17.28 -57.17 -0.99 -14.85 16 17 C -0.67 -9.28 5.75 -39.58 -0.23 -9.51 16 18 C -0.02 -0.27 9.52 -39.58 -0.38 -0.64 16 19 C -0.15 -1.49 10.05 -39.58 -0.40 -1.89 16 20 C -0.06 -0.63 10.05 -39.58 -0.40 -1.02 16 21 C -0.14 -1.71 10.05 -39.58 -0.40 -2.11 16 22 C 0.00 0.07 8.53 -39.58 -0.34 -0.27 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 26 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.43 3.81 8.83 -34.47 -0.30 3.51 16 29 H 0.14 1.30 7.62 -52.48 -0.40 0.90 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.15 2.34 6.85 -52.49 -0.36 1.99 16 LS Contribution 304.01 15.07 4.58 4.58 Total: -1.00 -35.52 304.01 -8.76 -44.28 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.56 Total: 0.89 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.91 Total: -21.25 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.91 Total: -39.34 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -2.19 Total: -42.85 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 38.29 SS G_CDS: -0.58 Total: 37.71 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.52 -8.76 -44.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813059197.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.053 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds