Wall clock time and date at job start Tue Mar 31 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86792 * 120.00085 * 2 1 4 4 H 1.48502 * 109.47044 * 270.00109 * 3 2 1 5 5 H 1.48498 * 109.47318 * 29.99645 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99684 * 3 2 1 7 7 C 1.38806 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00071 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99444 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99745 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47017 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46867 * 180.02562 * 12 11 10 14 14 C 1.34869 * 116.99603 * 179.97438 * 13 12 11 15 15 O 1.21601 * 120.00029 * 359.97438 * 14 13 12 16 16 C 1.46664 * 119.99951 * 179.97438 * 14 13 12 17 17 C 1.36340 * 125.81199 * 179.71641 * 16 14 13 18 18 C 1.41519 * 106.97524 * 179.85616 * 17 16 14 19 19 C 1.46626 * 126.51026 * 180.15544 * 18 17 16 20 20 O 1.21313 * 120.00087 * 180.27292 * 19 18 17 21 21 C 1.38647 * 106.98297 * 0.40969 * 18 17 16 22 22 N 1.34079 * 108.36704 * 359.74829 * 21 18 17 23 23 H 0.97005 * 125.35115 * 180.02562 * 22 21 18 24 24 H 0.97001 * 120.00147 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47543 * 60.00137 * 10 9 7 26 26 H 1.09001 * 109.47021 * 299.99641 * 10 9 7 27 27 H 1.09001 * 109.47502 * 60.00112 * 11 10 9 28 28 H 1.09001 * 109.47289 * 299.99908 * 11 10 9 29 29 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 30 30 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 31 31 H 1.07997 * 126.50866 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.99469 * 0.27950 * 19 18 17 33 33 H 1.08005 * 125.81960 * 179.77542 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5957 -3.2363 0.0021 12 6 5.8614 -4.7432 0.0025 13 8 7.2937 -4.9820 0.0043 14 6 7.6998 -6.2681 0.0054 15 8 6.8788 -7.1650 0.0054 16 6 9.1319 -6.5848 0.0066 17 6 9.6720 -7.8367 0.0132 18 6 11.0785 -7.6798 0.0084 19 6 12.0761 -8.7543 0.0095 20 8 13.2588 -8.4841 0.0100 21 6 11.3340 -6.3171 0.0084 22 7 10.1612 -5.6673 0.0073 23 1 10.0536 -4.7033 0.0067 24 1 -0.4850 0.8400 -0.0004 25 1 3.6441 -3.4315 -0.8893 26 1 3.6434 -3.4318 0.8907 27 1 6.0380 -2.7896 0.8926 28 1 6.0394 -2.7891 -0.8874 29 1 5.4179 -5.1901 0.8923 30 1 5.4192 -5.1903 -0.8877 31 1 9.1296 -8.7705 0.0181 32 1 11.7580 -9.7864 0.0098 33 1 12.3112 -5.8572 0.0087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815257566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:54 Heat of formation + Delta-G solvation = -92.587949 kcal Electronic energy + Delta-G solvation = -18070.173460 eV Core-core repulsion = 14801.859355 eV Total energy + Delta-G solvation = -3268.314105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.01569 -40.20831 -38.79130 -36.87964 -33.75384 -32.50768 -32.09713 -30.32774 -26.92363 -25.70635 -24.86467 -23.65152 -21.56994 -20.85151 -20.12941 -19.15064 -17.58157 -17.24159 -16.87548 -16.28384 -15.74278 -15.34151 -15.16281 -15.05321 -14.63726 -14.43805 -14.01662 -13.91842 -13.35069 -12.92898 -12.90814 -12.83199 -12.58126 -11.65206 -11.34756 -11.18159 -11.06794 -11.05321 -10.50683 -10.36519 -10.18763 -9.88516 -9.71645 -9.07838 -8.97578 -8.68703 -7.04915 -6.35015 -4.09087 0.80970 0.96455 2.20584 2.52085 2.55898 2.89997 2.94499 3.24254 3.38501 3.49005 4.00747 4.24384 4.39915 4.45732 4.62514 4.70875 4.91799 4.94756 5.00687 5.03727 5.17576 5.26604 5.44169 5.57170 5.63292 5.90164 5.92799 6.12539 6.18644 6.22461 6.44988 6.67781 7.16977 7.43913 7.88527 8.37902 9.10045 10.74317 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.053664 B = 0.002344 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.635150 B =11941.076687 C =12436.961678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.085 4.085 11 C -0.101 4.101 12 C 0.075 3.925 13 O -0.361 6.361 14 C 0.533 3.467 15 O -0.495 6.495 16 C -0.044 4.044 17 C -0.049 4.049 18 C -0.295 4.295 19 C 0.415 3.585 20 O -0.480 6.480 21 C 0.114 3.886 22 N -0.513 5.513 23 H 0.432 0.568 24 H 0.271 0.729 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.106 0.894 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.139 -13.507 0.103 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.021 5.979 10 C -0.233 4.233 11 C -0.140 4.140 12 C 0.001 3.999 13 O -0.278 6.278 14 C 0.377 3.623 15 O -0.382 6.382 16 C -0.152 4.152 17 C -0.074 4.074 18 C -0.302 4.302 19 C 0.275 3.725 20 O -0.355 6.355 21 C -0.031 4.031 22 N -0.107 5.107 23 H 0.271 0.729 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.181 0.819 32 H 0.122 0.878 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 22.885 -12.461 0.107 26.058 hybrid contribution -1.211 0.264 -0.034 1.240 sum 21.674 -12.197 0.073 24.870 Atomic orbital electron populations 1.69936 1.05901 1.27806 1.47909 1.24801 0.94538 0.99042 0.93291 0.86667 0.81695 0.83213 0.79735 1.19318 1.20001 1.16203 1.22108 0.86849 0.97537 1.58790 0.89253 1.84158 1.11985 1.04153 1.97570 1.22944 0.95794 1.00229 1.04354 1.21342 0.96161 0.92113 1.04337 1.23294 0.75330 0.98119 1.03199 1.86502 1.29645 1.27604 1.84073 1.19757 0.87407 0.81550 0.73537 1.90930 1.53487 1.47737 1.46080 1.19118 0.85408 0.89802 1.20906 1.21318 0.92679 0.96131 0.97259 1.20807 0.94884 0.94538 1.19951 1.23122 0.86693 0.93288 0.69404 1.90540 1.20371 1.87731 1.36819 1.22787 0.90217 0.92365 0.97700 1.41914 1.05392 1.10246 1.53141 0.72862 0.91876 0.90913 0.90878 0.90274 0.90281 0.90649 0.90646 0.81919 0.87776 0.79413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.25 13.97 55.49 0.78 -25.48 16 2 C 0.09 2.64 5.50 -17.43 -0.10 2.54 16 3 Si 0.86 21.03 27.74 -169.99 -4.72 16.31 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.24 -5.65 6.74 56.52 0.38 -5.27 16 7 C -0.51 -14.32 10.04 30.94 0.31 -14.01 16 8 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 9 S -0.21 -4.83 19.41 -107.50 -2.09 -6.92 16 10 C -0.08 -1.54 5.67 37.16 0.21 -1.33 16 11 C -0.10 -1.42 5.60 -26.73 -0.15 -1.57 16 12 C 0.08 0.95 5.48 37.16 0.20 1.15 16 13 O -0.36 -4.23 10.23 -40.95 -0.42 -4.65 16 14 C 0.53 6.25 7.93 34.13 0.27 6.52 16 15 O -0.49 -7.06 16.65 -19.34 -0.32 -7.39 16 16 C -0.04 -0.40 7.02 -82.43 -0.58 -0.98 16 17 C -0.05 -0.38 10.56 -39.02 -0.41 -0.80 16 18 C -0.29 -2.06 6.13 -105.11 -0.64 -2.71 16 19 C 0.41 2.73 11.70 34.11 0.40 3.13 16 20 O -0.48 -4.91 17.72 5.53 0.10 -4.81 16 21 C 0.11 0.68 11.73 -16.42 -0.19 0.48 16 22 N -0.51 -3.28 6.00 -9.26 -0.06 -3.33 16 23 H 0.43 1.88 8.96 -40.82 -0.37 1.51 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 26 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.11 0.33 8.06 -52.49 -0.42 -0.09 16 33 H 0.19 0.67 8.06 -52.48 -0.42 0.24 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -34.23 318.35 -6.35 -40.58 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -3.75 Total: -1.55 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -0.68 Total: -7.56 kcal Atomic # 7 Polarization: -29.53 SS G_CDS: 0.72 Total: -28.81 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.64 Total: -16.85 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.72 Total: 16.31 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -2.09 Total: -6.92 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.23 -6.35 -40.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815257566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.010 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds