Wall clock time and date at job start Tue Mar 31 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86792 * 120.00085 * 2 1 4 4 H 1.48502 * 109.47044 * 270.00109 * 3 2 1 5 5 H 1.48498 * 109.47318 * 29.99645 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99684 * 3 2 1 7 7 C 1.38806 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00071 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99444 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99745 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47017 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46867 * 180.02562 * 12 11 10 14 14 C 1.34869 * 116.99603 * 179.97438 * 13 12 11 15 15 O 1.21601 * 120.00029 * 359.97438 * 14 13 12 16 16 C 1.46664 * 119.99951 * 179.97438 * 14 13 12 17 17 C 1.36340 * 125.81199 * 179.71641 * 16 14 13 18 18 C 1.41519 * 106.97524 * 179.85616 * 17 16 14 19 19 C 1.46626 * 126.51026 * 180.15544 * 18 17 16 20 20 O 1.21313 * 120.00087 * 180.27292 * 19 18 17 21 21 C 1.38647 * 106.98297 * 0.40969 * 18 17 16 22 22 N 1.34079 * 108.36704 * 359.74829 * 21 18 17 23 23 H 0.97005 * 125.35115 * 180.02562 * 22 21 18 24 24 H 0.97001 * 120.00147 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47543 * 60.00137 * 10 9 7 26 26 H 1.09001 * 109.47021 * 299.99641 * 10 9 7 27 27 H 1.09001 * 109.47502 * 60.00112 * 11 10 9 28 28 H 1.09001 * 109.47289 * 299.99908 * 11 10 9 29 29 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 30 30 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 31 31 H 1.07997 * 126.50866 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.99469 * 0.27950 * 19 18 17 33 33 H 1.08005 * 125.81960 * 179.77542 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5957 -3.2363 0.0021 12 6 5.8614 -4.7432 0.0025 13 8 7.2937 -4.9820 0.0043 14 6 7.6998 -6.2681 0.0054 15 8 6.8788 -7.1650 0.0054 16 6 9.1319 -6.5848 0.0066 17 6 9.6720 -7.8367 0.0132 18 6 11.0785 -7.6798 0.0084 19 6 12.0761 -8.7543 0.0095 20 8 13.2588 -8.4841 0.0100 21 6 11.3340 -6.3171 0.0084 22 7 10.1612 -5.6673 0.0073 23 1 10.0536 -4.7033 0.0067 24 1 -0.4850 0.8400 -0.0004 25 1 3.6441 -3.4315 -0.8893 26 1 3.6434 -3.4318 0.8907 27 1 6.0380 -2.7896 0.8926 28 1 6.0394 -2.7891 -0.8874 29 1 5.4179 -5.1901 0.8923 30 1 5.4192 -5.1903 -0.8877 31 1 9.1296 -8.7705 0.0181 32 1 11.7580 -9.7864 0.0098 33 1 12.3112 -5.8572 0.0087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815257566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:53 Heat of formation + Delta-G solvation = -114.778439 kcal Electronic energy + Delta-G solvation = -18071.135711 eV Core-core repulsion = 14801.859355 eV Total energy + Delta-G solvation = -3269.276356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.61737 -41.09077 -39.39366 -37.86606 -34.97692 -34.69488 -32.65185 -30.99216 -28.26621 -27.69826 -25.44197 -24.46615 -22.77599 -21.46430 -20.81254 -19.84826 -19.53363 -18.25257 -17.84530 -17.11932 -16.99263 -16.39309 -16.23711 -16.02618 -15.62406 -15.51406 -14.96412 -14.63286 -14.60422 -14.44641 -14.06070 -14.02788 -13.39079 -13.33763 -13.06380 -12.65825 -12.46208 -12.33576 -11.94460 -11.72509 -11.58081 -11.17925 -10.74760 -10.62451 -10.27430 -9.56511 -9.02191 -8.53245 -6.25621 0.11175 0.44820 1.02955 1.31859 1.35992 1.47872 1.77122 1.82249 2.01464 2.23335 2.34743 2.64190 2.84720 3.49234 3.65879 3.80750 3.90699 4.00684 4.07202 4.14072 4.26877 4.37417 4.51831 4.62301 4.68671 4.95436 4.96008 5.04589 5.28633 5.35928 5.56802 5.68102 6.09312 6.23181 6.54409 6.68394 6.90156 8.59710 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.053664 B = 0.002344 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.635150 B =11941.076687 C =12436.961678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.226 1.226 7 C -0.526 4.526 8 H 0.051 0.949 9 S -0.206 6.206 10 C -0.075 4.075 11 C -0.087 4.087 12 C 0.081 3.919 13 O -0.357 6.357 14 C 0.535 3.465 15 O -0.528 6.528 16 C -0.072 4.072 17 C -0.040 4.040 18 C -0.310 4.310 19 C 0.423 3.577 20 O -0.520 6.520 21 C 0.130 3.870 22 N -0.505 5.505 23 H 0.441 0.559 24 H 0.277 0.723 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.173 0.827 32 H 0.143 0.857 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.744 -13.292 0.130 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.149 1.149 7 C -0.673 4.673 8 H 0.070 0.930 9 S 0.022 5.978 10 C -0.224 4.224 11 C -0.125 4.125 12 C 0.006 3.994 13 O -0.274 6.274 14 C 0.382 3.618 15 O -0.418 6.418 16 C -0.180 4.180 17 C -0.064 4.064 18 C -0.317 4.317 19 C 0.286 3.714 20 O -0.397 6.397 21 C -0.015 4.015 22 N -0.100 5.100 23 H 0.282 0.718 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.191 0.809 32 H 0.159 0.841 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 25.481 -12.241 0.136 28.269 hybrid contribution -1.986 0.046 -0.047 1.987 sum 23.495 -12.195 0.089 26.472 Atomic orbital electron populations 1.70044 1.07712 1.29166 1.49022 1.25821 0.95458 1.02911 0.92724 0.85693 0.80797 0.78468 0.80258 1.18550 1.18878 1.14934 1.22353 0.90124 0.96320 1.58540 0.93046 1.83782 1.07467 1.08949 1.97599 1.22977 0.98932 0.96139 1.04318 1.21148 0.92884 0.93371 1.05129 1.23066 0.76167 0.96829 1.03357 1.86483 1.28752 1.27992 1.84160 1.20129 0.88300 0.80885 0.72525 1.90912 1.54559 1.48336 1.47988 1.18924 0.84556 0.90842 1.23715 1.21549 0.93135 0.96201 0.95549 1.20998 0.94615 0.95363 1.20751 1.23622 0.85720 0.94603 0.67450 1.90538 1.21857 1.88309 1.38981 1.23296 0.90832 0.92284 0.95128 1.41905 1.04883 1.10579 1.52597 0.71764 0.91379 0.91021 0.90993 0.89492 0.89471 0.90607 0.90599 0.80949 0.84092 0.76896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.15 13.97 21.65 0.30 -55.85 16 2 C 0.04 2.06 5.50 84.86 0.47 2.53 16 3 Si 0.93 43.01 27.74 68.60 1.90 44.91 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.23 -9.97 6.74 99.48 0.67 -9.30 16 7 C -0.53 -30.38 10.04 67.96 0.68 -29.70 16 8 H 0.05 3.24 8.03 -2.91 -0.02 3.22 16 9 S -0.21 -9.46 19.41 -56.49 -1.10 -10.55 16 10 C -0.08 -2.67 5.67 71.98 0.41 -2.26 16 11 C -0.09 -2.28 5.60 30.60 0.17 -2.11 16 12 C 0.08 1.93 5.48 71.98 0.39 2.32 16 13 O -0.36 -7.82 10.23 -57.83 -0.59 -8.41 16 14 C 0.54 11.99 7.93 70.02 0.56 12.55 16 15 O -0.53 -14.84 16.65 19.51 0.32 -14.51 16 16 C -0.07 -1.20 7.02 39.95 0.28 -0.92 16 17 C -0.04 -0.54 10.56 22.64 0.24 -0.30 16 18 C -0.31 -3.63 6.13 -20.18 -0.12 -3.75 16 19 C 0.42 4.61 11.70 70.01 0.82 5.43 16 20 O -0.52 -9.77 17.72 -3.13 -0.06 -9.82 16 21 C 0.13 1.21 11.73 84.45 0.99 2.20 16 22 N -0.51 -5.32 6.00 -183.20 -1.10 -6.42 16 23 H 0.44 2.82 8.96 -92.70 -0.83 1.99 16 24 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 26 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.14 0.46 8.06 -2.91 -0.02 0.44 16 33 H 0.21 0.84 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -74.67 318.35 4.84 -69.83 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.27 Total: 4.84 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 4.88 Total: -14.01 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.80 Total: -62.27 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.32 Total: -32.75 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.90 Total: 44.91 kcal Atomic # 16 Polarization: -9.46 SS G_CDS: -1.10 Total: -10.55 kcal Total: -74.67 4.84 -69.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815257566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.951 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds