Wall clock time and date at job start Tue Mar 31 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99599 * 2 1 4 4 H 1.48504 * 109.47143 * 269.99322 * 3 2 1 5 5 H 1.48494 * 109.47637 * 29.99528 * 3 2 1 6 6 H 1.48503 * 109.46993 * 149.99617 * 3 2 1 7 7 C 1.38810 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00313 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00022 * 180.02562 * 7 2 1 10 10 S 1.65597 * 120.00126 * 180.02562 * 9 7 2 11 11 O 1.42096 * 106.40500 * 178.26254 * 10 9 7 12 12 O 1.42099 * 106.40180 * 311.18912 * 10 9 7 13 13 C 1.76209 * 107.21703 * 64.72470 * 10 9 7 14 14 C 1.38263 * 119.94168 * 269.72617 * 13 10 9 15 15 C 1.38146 * 120.05373 * 179.72439 * 14 13 10 16 16 C 1.38729 * 119.94094 * 0.54988 * 15 14 13 17 17 O 1.35909 * 120.05550 * 179.74564 * 16 15 14 18 18 C 1.42899 * 117.00085 * 174.45182 * 17 16 15 19 19 C 1.52995 * 117.49953 * 224.89073 * 18 17 16 20 20 C 1.53000 * 117.49773 * 156.22974 * 18 17 16 21 21 C 1.38731 * 119.89432 * 359.72722 * 16 15 14 22 22 C 1.38149 * 119.93638 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00201 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99925 * 359.72407 * 9 7 2 25 25 H 1.08008 * 119.97633 * 0.02562 * 14 13 10 26 26 H 1.08004 * 120.02849 * 180.27561 * 15 14 13 27 27 H 1.09003 * 115.54926 * 10.56649 * 18 17 16 28 28 H 1.09007 * 117.50098 * 0.02562 * 19 18 17 29 29 H 1.09000 * 117.49822 * 145.01700 * 19 18 17 30 30 H 1.08994 * 117.50116 * 214.98222 * 20 18 17 31 31 H 1.09001 * 117.49720 * 359.97438 * 20 18 17 32 32 H 1.07991 * 120.03276 * 180.02562 * 21 16 15 33 33 H 1.08002 * 119.96722 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 16 4.2077 -2.6361 0.0011 11 8 5.5883 -2.3024 -0.0397 12 8 3.6305 -3.4328 1.0265 13 6 3.8467 -3.4468 -1.5213 14 6 2.7703 -4.3106 -1.6049 15 6 2.4818 -4.9430 -2.7987 16 6 3.2800 -4.7196 -3.9111 17 8 3.0014 -5.3445 -5.0854 18 6 3.7889 -4.9758 -6.2194 19 6 3.0551 -4.7294 -7.5391 20 6 3.9046 -5.9900 -7.3591 21 6 4.3629 -3.8569 -3.8232 22 6 4.6435 -3.2222 -2.6286 23 1 -0.4850 0.8400 -0.0004 24 1 3.8646 -0.3620 -0.0030 25 1 2.1516 -4.4873 -0.7374 26 1 1.6382 -5.6141 -2.8647 27 1 4.6609 -4.3578 -6.0053 28 1 1.9715 -4.8481 -7.5423 29 1 3.4445 -3.9494 -8.1934 30 1 4.8524 -6.0390 -7.8950 31 1 3.3803 -6.9387 -7.2437 32 1 4.9855 -3.6811 -4.6878 33 1 5.4861 -2.5502 -2.5597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829704526.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:23 Heat of formation + Delta-G solvation = -44.177230 kcal Electronic energy + Delta-G solvation = -19719.769109 eV Core-core repulsion = 16453.554251 eV Total energy + Delta-G solvation = -3266.214858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.19004 -37.84697 -36.25336 -35.40105 -34.87251 -34.69569 -31.47271 -30.88175 -29.76477 -24.21729 -24.03197 -22.79082 -22.68233 -21.12303 -18.93995 -18.63087 -18.29999 -17.12667 -16.30794 -16.04082 -15.31808 -14.95429 -14.89827 -14.54284 -14.26781 -13.93761 -13.36711 -13.12168 -12.78024 -12.63816 -12.46857 -12.21229 -11.87920 -11.44346 -11.19723 -11.17979 -11.01343 -10.95019 -10.59043 -10.48478 -10.42044 -10.25601 -10.07708 -9.97287 -8.83634 -8.46867 -8.25188 -6.38158 -3.90721 1.17826 1.49370 1.54887 2.85785 3.11866 3.15403 3.19549 3.42891 3.76440 4.12410 4.22613 4.35696 4.57633 4.68557 4.69339 4.84576 4.92234 5.09172 5.19852 5.28658 5.34388 5.53911 5.58314 5.73270 5.76903 5.86966 6.16203 6.23916 6.37414 6.55387 6.85760 6.88981 7.39534 7.64334 8.28893 8.92829 9.07941 10.73021 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.005107 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.991698 B = 5481.345312 C = 6085.884810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.049 3.951 3 Si 0.882 3.118 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.288 4.288 8 H 0.121 0.879 9 N -0.982 5.982 10 S 2.645 3.355 11 O -1.000 7.000 12 O -0.963 6.963 13 C -0.695 4.695 14 C 0.026 3.974 15 C -0.174 4.174 16 C 0.167 3.833 17 O -0.283 6.283 18 C -0.002 4.002 19 C -0.183 4.183 20 C -0.171 4.171 21 C -0.236 4.236 22 C 0.014 3.986 23 H 0.275 0.725 24 H 0.390 0.610 25 H 0.147 0.853 26 H 0.134 0.866 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.132 0.868 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.664 -6.778 -12.457 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.158 4.158 3 Si 0.708 3.292 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.424 4.424 8 H 0.138 0.862 9 N -0.734 5.734 10 S 2.736 3.264 11 O -0.990 6.990 12 O -0.954 6.954 13 C -0.777 4.777 14 C 0.007 3.993 15 C -0.193 4.193 16 C 0.121 3.879 17 O -0.196 6.196 18 C -0.058 4.058 19 C -0.220 4.220 20 C -0.208 4.208 21 C -0.255 4.255 22 C -0.005 4.005 23 H 0.085 0.915 24 H 0.225 0.775 25 H 0.164 0.836 26 H 0.152 0.848 27 H 0.145 0.855 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.882 -7.400 -11.880 15.596 hybrid contribution 0.215 1.301 -1.009 1.660 sum 7.098 -6.099 -12.888 15.927 Atomic orbital electron populations 1.69715 1.05671 1.27859 1.48409 1.25051 0.95353 0.98311 0.97087 0.86581 0.80165 0.83458 0.78965 1.19648 1.20186 1.18966 1.18987 0.78322 0.96928 1.48212 0.86162 1.52094 1.15657 1.21022 1.84672 1.04734 0.72546 0.73276 0.75870 1.93433 1.33432 1.83991 1.88096 1.93501 1.78661 1.69129 1.54068 1.31677 1.06630 1.15333 1.24043 1.20796 0.92391 0.89242 0.96882 1.20519 1.01764 1.05646 0.91396 1.19131 0.92992 0.90634 0.85121 1.86021 1.57316 1.60664 1.15603 1.23103 0.97495 1.03680 0.81553 1.23472 1.00345 0.99829 0.98333 1.23364 1.02493 0.95278 0.99691 1.21217 1.00583 1.03875 0.99823 1.20640 0.95640 0.93824 0.90433 0.91516 0.77547 0.83566 0.84799 0.85490 0.87730 0.87668 0.87562 0.87801 0.85076 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.16 13.97 55.49 0.78 -23.39 16 2 C 0.05 1.28 5.50 -17.43 -0.10 1.18 16 3 Si 0.88 19.39 27.73 -169.99 -4.71 14.67 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.49 6.52 56.52 0.37 -5.12 16 7 C -0.29 -7.35 10.12 -15.06 -0.15 -7.50 16 8 H 0.12 3.20 8.05 -52.49 -0.42 2.78 16 9 N -0.98 -22.22 5.55 31.50 0.17 -22.04 16 10 S 2.65 56.13 5.70 -107.50 -0.61 55.51 16 11 O -1.00 -21.87 17.28 -57.17 -0.99 -22.86 16 12 O -0.96 -22.77 16.98 -57.17 -0.97 -23.75 16 13 C -0.69 -13.27 5.89 -39.57 -0.23 -13.51 16 14 C 0.03 0.48 9.51 -39.61 -0.38 0.10 16 15 C -0.17 -2.87 9.99 -39.43 -0.39 -3.27 16 16 C 0.17 2.63 6.68 -39.22 -0.26 2.37 16 17 O -0.28 -4.03 10.39 -19.46 -0.20 -4.23 16 18 C 0.00 -0.02 6.20 -26.73 -0.17 -0.19 16 19 C -0.18 -1.60 10.48 -26.70 -0.28 -1.88 16 20 C -0.17 -1.41 10.48 -26.69 -0.28 -1.69 16 21 C -0.24 -3.56 9.19 -39.43 -0.36 -3.92 16 22 C 0.01 0.24 9.51 -39.61 -0.38 -0.14 16 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.39 8.27 5.89 -34.47 -0.20 8.07 16 25 H 0.15 2.61 7.61 -52.48 -0.40 2.21 16 26 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 27 H 0.13 1.20 5.33 -51.93 -0.28 0.92 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.13 1.54 5.52 -52.49 -0.29 1.25 16 33 H 0.14 2.08 7.61 -52.49 -0.40 1.68 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -31.28 300.83 -8.26 -39.53 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -3.27 Total: 10.45 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -2.98 Total: -28.44 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.95 Total: -45.43 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -2.16 Total: -50.83 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Atomic # 16 Polarization: 56.13 SS G_CDS: -0.61 Total: 55.51 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.28 -8.26 -39.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829704526.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.643 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds