Wall clock time and date at job start Tue Mar 31 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99599 * 2 1 4 4 H 1.48504 * 109.47143 * 269.99322 * 3 2 1 5 5 H 1.48494 * 109.47637 * 29.99528 * 3 2 1 6 6 H 1.48503 * 109.46993 * 149.99617 * 3 2 1 7 7 C 1.38810 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00313 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00022 * 180.02562 * 7 2 1 10 10 S 1.65597 * 120.00126 * 180.02562 * 9 7 2 11 11 O 1.42096 * 106.40500 * 178.26254 * 10 9 7 12 12 O 1.42099 * 106.40180 * 311.18912 * 10 9 7 13 13 C 1.76209 * 107.21703 * 64.72470 * 10 9 7 14 14 C 1.38263 * 119.94168 * 269.72617 * 13 10 9 15 15 C 1.38146 * 120.05373 * 179.72439 * 14 13 10 16 16 C 1.38729 * 119.94094 * 0.54988 * 15 14 13 17 17 O 1.35909 * 120.05550 * 179.74564 * 16 15 14 18 18 C 1.42899 * 117.00085 * 174.45182 * 17 16 15 19 19 C 1.52995 * 117.49953 * 224.89073 * 18 17 16 20 20 C 1.53000 * 117.49773 * 156.22974 * 18 17 16 21 21 C 1.38731 * 119.89432 * 359.72722 * 16 15 14 22 22 C 1.38149 * 119.93638 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00201 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99925 * 359.72407 * 9 7 2 25 25 H 1.08008 * 119.97633 * 0.02562 * 14 13 10 26 26 H 1.08004 * 120.02849 * 180.27561 * 15 14 13 27 27 H 1.09003 * 115.54926 * 10.56649 * 18 17 16 28 28 H 1.09007 * 117.50098 * 0.02562 * 19 18 17 29 29 H 1.09000 * 117.49822 * 145.01700 * 19 18 17 30 30 H 1.08994 * 117.50116 * 214.98222 * 20 18 17 31 31 H 1.09001 * 117.49720 * 359.97438 * 20 18 17 32 32 H 1.07991 * 120.03276 * 180.02562 * 21 16 15 33 33 H 1.08002 * 119.96722 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 16 4.2077 -2.6361 0.0011 11 8 5.5883 -2.3024 -0.0397 12 8 3.6305 -3.4328 1.0265 13 6 3.8467 -3.4468 -1.5213 14 6 2.7703 -4.3106 -1.6049 15 6 2.4818 -4.9430 -2.7987 16 6 3.2800 -4.7196 -3.9111 17 8 3.0014 -5.3445 -5.0854 18 6 3.7889 -4.9758 -6.2194 19 6 3.0551 -4.7294 -7.5391 20 6 3.9046 -5.9900 -7.3591 21 6 4.3629 -3.8569 -3.8232 22 6 4.6435 -3.2222 -2.6286 23 1 -0.4850 0.8400 -0.0004 24 1 3.8646 -0.3620 -0.0030 25 1 2.1516 -4.4873 -0.7374 26 1 1.6382 -5.6141 -2.8647 27 1 4.6609 -4.3578 -6.0053 28 1 1.9715 -4.8481 -7.5423 29 1 3.4445 -3.9494 -8.1934 30 1 4.8524 -6.0390 -7.8950 31 1 3.3803 -6.9387 -7.2437 32 1 4.9855 -3.6811 -4.6878 33 1 5.4861 -2.5502 -2.5597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829704526.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:22 Heat of formation + Delta-G solvation = -66.635165 kcal Electronic energy + Delta-G solvation = -19720.742958 eV Core-core repulsion = 16453.554251 eV Total energy + Delta-G solvation = -3267.188707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.32856 -38.97929 -38.12606 -36.76999 -36.54591 -36.28875 -33.35710 -32.19911 -31.11270 -26.13228 -25.16635 -24.07787 -23.38227 -22.20994 -20.72413 -20.12545 -19.77143 -18.71617 -17.99454 -17.32384 -16.64722 -16.30448 -16.07501 -16.01935 -15.46053 -15.22569 -14.99444 -14.55745 -14.53365 -14.11947 -13.56423 -13.49844 -13.21878 -13.06492 -13.01241 -12.87324 -12.47982 -12.21932 -12.17005 -12.05126 -11.93025 -11.64584 -11.43096 -11.18897 -10.36662 -10.16143 -9.52175 -8.27326 -5.92610 -0.37732 -0.07656 0.23246 1.38491 1.40459 1.47103 1.86618 2.24095 2.33869 2.53898 2.80944 2.93757 3.16937 3.44563 3.57701 3.72061 3.90256 3.93661 3.96080 4.17805 4.25530 4.53592 4.57919 4.70518 4.86791 4.93046 4.98312 5.01884 5.08008 5.15913 5.16120 5.57979 5.78166 6.26624 6.37191 7.03320 7.18722 8.88041 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.005107 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.991698 B = 5481.345312 C = 6085.884810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.006 4.006 3 Si 0.936 3.064 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.245 1.245 7 C -0.306 4.306 8 H 0.092 0.908 9 N -1.001 6.001 10 S 2.700 3.300 11 O -0.996 6.996 12 O -0.994 6.994 13 C -0.712 4.712 14 C 0.011 3.989 15 C -0.183 4.183 16 C 0.177 3.823 17 O -0.292 6.292 18 C -0.036 4.036 19 C -0.179 4.179 20 C -0.155 4.155 21 C -0.228 4.228 22 C 0.010 3.990 23 H 0.273 0.727 24 H 0.398 0.602 25 H 0.138 0.862 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.172 0.828 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.412 -7.278 -15.212 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.206 4.206 3 Si 0.759 3.241 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.169 1.169 7 C -0.438 4.438 8 H 0.110 0.890 9 N -0.756 5.756 10 S 2.792 3.208 11 O -0.986 6.986 12 O -0.985 6.985 13 C -0.801 4.801 14 C -0.009 4.009 15 C -0.203 4.203 16 C 0.130 3.870 17 O -0.205 6.205 18 C -0.092 4.092 19 C -0.216 4.216 20 C -0.192 4.192 21 C -0.247 4.247 22 C -0.010 4.010 23 H 0.082 0.918 24 H 0.234 0.766 25 H 0.156 0.844 26 H 0.169 0.831 27 H 0.161 0.839 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.119 0.881 32 H 0.189 0.811 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.577 -7.830 -14.593 19.131 hybrid contribution -0.408 1.055 -0.375 1.191 sum 9.169 -6.776 -14.968 18.815 Atomic orbital electron populations 1.69842 1.07291 1.28385 1.52646 1.25732 0.96043 1.01605 0.97202 0.85725 0.79559 0.79171 0.79632 1.18432 1.20527 1.16929 1.18683 0.79372 0.96078 1.49656 0.88988 1.51542 1.14494 1.21455 1.88101 1.01504 0.71663 0.72524 0.75129 1.93460 1.32564 1.84275 1.88315 1.93483 1.79241 1.69901 1.55859 1.30889 1.08975 1.17391 1.22811 1.20827 0.92357 0.89941 0.97764 1.20685 1.02636 1.05813 0.91128 1.19264 0.92421 0.89788 0.85533 1.86018 1.58209 1.60391 1.15863 1.23599 0.98372 1.06246 0.80955 1.23585 1.00048 1.00943 0.97029 1.23502 1.03478 0.94664 0.97529 1.21589 1.00421 1.02395 1.00302 1.20962 0.95662 0.94084 0.90255 0.91787 0.76612 0.84384 0.83140 0.83918 0.88637 0.85551 0.84932 0.88118 0.81096 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.76 13.97 21.65 0.30 -54.46 16 2 C -0.01 -0.30 5.50 84.86 0.47 0.16 16 3 Si 0.94 40.29 27.73 68.60 1.90 42.19 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.25 -9.59 6.52 99.48 0.65 -8.94 16 7 C -0.31 -16.27 10.12 84.03 0.85 -15.42 16 8 H 0.09 5.26 8.05 -2.91 -0.02 5.23 16 9 N -1.00 -45.47 5.55 -54.27 -0.30 -45.77 16 10 S 2.70 113.08 5.70 -56.49 -0.32 112.76 16 11 O -1.00 -41.41 17.28 -128.00 -2.21 -43.62 16 12 O -0.99 -47.59 16.98 -128.00 -2.17 -49.77 16 13 C -0.71 -26.49 5.89 22.28 0.13 -26.36 16 14 C 0.01 0.38 9.51 22.25 0.21 0.60 16 15 C -0.18 -5.85 9.99 22.37 0.22 -5.63 16 16 C 0.18 5.11 6.68 22.51 0.15 5.26 16 17 O -0.29 -7.48 10.39 -92.53 -0.96 -8.44 16 18 C -0.04 -0.64 6.20 30.59 0.19 -0.45 16 19 C -0.18 -2.51 10.48 30.62 0.32 -2.19 16 20 C -0.15 -1.93 10.48 30.62 0.32 -1.61 16 21 C -0.23 -6.05 9.19 22.37 0.21 -5.84 16 22 C 0.01 0.30 9.51 22.25 0.21 0.51 16 23 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 24 H 0.40 16.55 5.89 -96.74 -0.57 15.98 16 25 H 0.14 5.16 7.61 -2.91 -0.02 5.13 16 26 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 27 H 0.14 1.99 5.33 -2.39 -0.01 1.98 16 28 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.17 3.10 5.52 -2.92 -0.02 3.08 16 33 H 0.16 4.19 7.61 -2.91 -0.02 4.17 16 Total: -1.00 -69.40 300.83 0.04 -69.36 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.52 Total: 28.72 kcal Atomic # 6 Polarization: -54.25 SS G_CDS: 3.28 Total: -50.97 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: 0.00 Total: -100.22 kcal Atomic # 8 Polarization: -96.48 SS G_CDS: -5.35 Total: -101.83 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.90 Total: 42.19 kcal Atomic # 16 Polarization: 113.08 SS G_CDS: -0.32 Total: 112.76 kcal Total: -69.40 0.04 -69.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829704526.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.721 kcal (2) G-P(sol) polarization free energy of solvation -69.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds