Wall clock time and date at job start Tue Mar 31 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99944 * 2 1 4 4 H 1.48496 * 109.47063 * 239.99854 * 3 2 1 5 5 H 1.48497 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46959 * 119.99989 * 3 2 1 7 7 C 1.37878 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00282 * 171.98655 * 7 2 1 9 9 C 1.50699 * 120.00067 * 351.99352 * 7 2 1 10 10 C 1.53007 * 115.54871 * 84.75503 * 9 7 2 11 11 S 1.81401 * 109.46864 * 65.28605 * 10 9 7 12 12 O 1.42101 * 110.54345 * 63.02656 * 11 10 9 13 13 O 1.42100 * 110.54315 * 286.27753 * 11 10 9 14 14 O 1.52203 * 104.44854 * 174.65208 * 11 10 9 15 15 C 1.35904 * 113.99773 * 74.99910 * 14 11 10 16 16 C 1.39141 * 120.47743 * 270.24979 * 15 14 11 17 17 C 1.38533 * 118.38028 * 180.26727 * 16 15 14 18 18 C 1.38262 * 119.21710 * 359.75040 * 17 16 15 19 19 N 1.31849 * 120.88502 * 359.97438 * 18 17 16 20 20 C 1.31833 * 121.78266 * 0.02562 * 19 18 17 21 21 C 1.53000 * 117.50248 * 230.42837 * 9 7 2 22 22 C 1.52998 * 117.49997 * 299.09162 * 9 7 2 23 23 H 0.96997 * 120.00223 * 5.02608 * 1 2 3 24 24 H 1.08995 * 109.47542 * 305.28627 * 10 9 7 25 25 H 1.08999 * 109.47156 * 185.28309 * 10 9 7 26 26 H 1.08008 * 120.80927 * 0.02562 * 16 15 14 27 27 H 1.08000 * 120.39460 * 179.72439 * 17 16 15 28 28 H 1.07994 * 119.55515 * 179.97438 * 18 17 16 29 29 H 1.08001 * 119.65856 * 179.97438 * 20 19 18 30 30 H 1.08998 * 117.49710 * 215.00120 * 21 9 7 31 31 H 1.09001 * 117.49481 * 0.02562 * 21 9 7 32 32 H 1.09008 * 117.49677 * 359.97325 * 22 9 7 33 33 H 1.08996 * 117.50264 * 144.96823 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0766 -1.1986 -0.1298 9 6 1.2622 -2.4927 0.1829 10 6 0.6625 -3.0943 -1.0897 11 16 1.9983 -3.5707 -2.2208 12 8 2.8071 -4.5837 -1.6387 13 8 2.5813 -2.4199 -2.8166 14 8 1.2898 -4.2711 -3.3716 15 6 0.6402 -3.4275 -4.2161 16 6 -0.6869 -3.0800 -3.9838 17 6 -1.3086 -2.2213 -4.8756 18 6 -0.5941 -1.7372 -5.9559 19 7 0.6645 -2.0819 -6.1442 20 6 1.2923 -2.8963 -5.3192 21 6 1.7854 -3.4626 1.2442 22 6 0.4885 -2.6869 1.4885 23 1 -0.4850 0.8368 -0.0736 24 1 0.0224 -2.3568 -1.5737 25 1 0.0729 -3.9744 -0.8327 26 1 -1.2207 -3.4734 -3.1312 27 1 -2.3392 -1.9336 -4.7291 28 1 -1.0735 -1.0677 -6.6547 29 1 2.3237 -3.1562 -5.5066 30 1 1.7024 -4.5293 1.0358 31 1 2.6663 -3.1611 1.8109 32 1 0.5169 -1.8754 2.2158 33 1 -0.4478 -3.2429 1.4408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831069046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:40 Heat of formation + Delta-G solvation = -40.341214 kcal Electronic energy + Delta-G solvation = -20839.202738 eV Core-core repulsion = 17573.154222 eV Total energy + Delta-G solvation = -3266.048516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12020 -38.79309 -36.84772 -36.50086 -35.38286 -32.48248 -32.11107 -30.63376 -28.41809 -25.56707 -24.00516 -23.84818 -21.29368 -20.71169 -19.48530 -17.98974 -17.42679 -17.32343 -16.91176 -16.28875 -15.38781 -14.86031 -14.65317 -14.20670 -13.97589 -13.83812 -13.44646 -13.20369 -13.02893 -12.23538 -12.08325 -12.02511 -11.88853 -11.48452 -11.39273 -11.13264 -10.95567 -10.70555 -10.54010 -10.20960 -9.96697 -9.80680 -9.62870 -9.10486 -9.04220 -8.62897 -8.20042 -6.20888 -4.31519 0.41967 1.06171 1.22071 2.67155 3.28815 3.30656 3.37709 3.60946 4.22950 4.32418 4.35965 4.51598 4.59139 4.70219 4.89113 5.01819 5.05881 5.13140 5.38854 5.55266 5.77321 5.83838 5.87417 5.99944 6.14502 6.27663 6.49813 6.57758 6.65766 6.89914 7.13611 7.32252 7.74137 7.76478 8.12350 8.74210 9.40172 10.86731 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.008176 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.687539 B = 3423.872788 C = 4209.596139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.084 3.916 3 Si 0.891 3.109 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.069 0.931 9 C 0.044 3.956 10 C -0.575 4.575 11 S 2.584 3.416 12 O -0.940 6.940 13 O -0.940 6.940 14 O -0.679 6.679 15 C 0.031 3.969 16 C -0.081 4.081 17 C -0.152 4.152 18 C 0.107 3.893 19 N -0.465 5.465 20 C 0.132 3.868 21 C -0.209 4.209 22 C -0.139 4.139 23 H 0.264 0.736 24 H 0.136 0.864 25 H 0.104 0.896 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.166 0.834 29 H 0.169 0.831 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 -5.027 -8.030 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.122 4.122 3 Si 0.717 3.283 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.088 0.912 9 C 0.042 3.958 10 C -0.706 4.706 11 S 2.683 3.317 12 O -0.939 6.939 13 O -0.939 6.939 14 O -0.636 6.636 15 C -0.013 4.013 16 C -0.109 4.109 17 C -0.172 4.172 18 C -0.051 4.051 19 N -0.175 5.175 20 C -0.027 4.027 21 C -0.246 4.246 22 C -0.178 4.178 23 H 0.074 0.926 24 H 0.155 0.845 25 H 0.123 0.877 26 H 0.170 0.830 27 H 0.167 0.833 28 H 0.183 0.817 29 H 0.186 0.814 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.296 -4.911 -8.997 11.114 hybrid contribution -0.692 0.621 1.330 1.623 sum -4.988 -4.290 -7.667 10.103 Atomic orbital electron populations 1.69953 1.06056 1.27357 1.47616 1.24941 0.94816 0.99239 0.93172 0.86651 0.79964 0.82315 0.79354 1.19401 1.21100 1.19815 1.20488 0.93795 0.88504 1.52644 0.91244 1.18229 0.99152 0.94449 0.83999 1.30241 1.16743 1.08931 1.14702 1.05810 0.77139 0.73800 0.74913 1.93546 1.64983 1.58260 1.77061 1.93598 1.75512 1.52052 1.72690 1.85788 1.73323 1.53573 1.50874 1.19117 0.92730 0.95248 0.94227 1.21935 0.92788 0.95950 1.00233 1.22102 1.02275 0.97681 0.95115 1.22999 0.89940 0.96359 0.95767 1.67821 1.10057 1.11321 1.28328 1.23031 1.00380 0.90739 0.88582 1.23234 0.98781 0.96097 1.06474 1.22565 0.92637 1.01022 1.01618 0.92646 0.84546 0.87742 0.82992 0.83285 0.81674 0.81402 0.90549 0.89314 0.89449 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.31 12.99 55.43 0.72 -22.59 16 2 C 0.08 2.23 5.38 -17.82 -0.10 2.13 16 3 Si 0.89 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.85 8.15 -34.44 -0.28 -14.13 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 C 0.04 1.04 1.32 -155.66 -0.21 0.84 16 10 C -0.58 -11.84 5.20 37.16 0.19 -11.65 16 11 S 2.58 53.87 4.91 -107.50 -0.53 53.34 16 12 O -0.94 -21.38 18.09 -67.04 -1.21 -22.60 16 13 O -0.94 -21.94 15.90 -67.04 -1.07 -23.01 16 14 O -0.68 -12.04 10.08 -51.76 -0.52 -12.56 16 15 C 0.03 0.51 4.81 -39.07 -0.19 0.32 16 16 C -0.08 -1.12 8.68 -39.14 -0.34 -1.46 16 17 C -0.15 -1.74 10.11 -39.46 -0.40 -2.14 16 18 C 0.11 1.28 11.18 -17.54 -0.20 1.08 16 19 N -0.47 -6.95 10.35 -13.13 -0.14 -7.08 16 20 C 0.13 2.12 10.22 -17.38 -0.18 1.94 16 21 C -0.21 -4.50 9.96 -26.69 -0.27 -4.76 16 22 C -0.14 -3.09 9.50 -26.69 -0.25 -3.34 16 23 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 24 H 0.14 2.84 6.98 -51.93 -0.36 2.48 16 25 H 0.10 1.78 8.09 -51.92 -0.42 1.36 16 26 H 0.15 1.77 7.64 -52.48 -0.40 1.37 16 27 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 32 H 0.09 2.04 8.14 -51.92 -0.42 1.62 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -32.30 303.30 -9.09 -41.39 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.69 Total: 3.69 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: -2.21 Total: -31.17 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.58 Total: -29.68 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -2.80 Total: -58.16 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 53.87 SS G_CDS: -0.53 Total: 53.34 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.30 -9.09 -41.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831069046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.050 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds