Wall clock time and date at job start Tue Mar 31 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99944 * 2 1 4 4 H 1.48496 * 109.47063 * 239.99854 * 3 2 1 5 5 H 1.48497 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46959 * 119.99989 * 3 2 1 7 7 C 1.37878 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00282 * 171.98655 * 7 2 1 9 9 C 1.50699 * 120.00067 * 351.99352 * 7 2 1 10 10 C 1.53007 * 115.54871 * 84.75503 * 9 7 2 11 11 S 1.81401 * 109.46864 * 65.28605 * 10 9 7 12 12 O 1.42101 * 110.54345 * 63.02656 * 11 10 9 13 13 O 1.42100 * 110.54315 * 286.27753 * 11 10 9 14 14 O 1.52203 * 104.44854 * 174.65208 * 11 10 9 15 15 C 1.35904 * 113.99773 * 74.99910 * 14 11 10 16 16 C 1.39141 * 120.47743 * 270.24979 * 15 14 11 17 17 C 1.38533 * 118.38028 * 180.26727 * 16 15 14 18 18 C 1.38262 * 119.21710 * 359.75040 * 17 16 15 19 19 N 1.31849 * 120.88502 * 359.97438 * 18 17 16 20 20 C 1.31833 * 121.78266 * 0.02562 * 19 18 17 21 21 C 1.53000 * 117.50248 * 230.42837 * 9 7 2 22 22 C 1.52998 * 117.49997 * 299.09162 * 9 7 2 23 23 H 0.96997 * 120.00223 * 5.02608 * 1 2 3 24 24 H 1.08995 * 109.47542 * 305.28627 * 10 9 7 25 25 H 1.08999 * 109.47156 * 185.28309 * 10 9 7 26 26 H 1.08008 * 120.80927 * 0.02562 * 16 15 14 27 27 H 1.08000 * 120.39460 * 179.72439 * 17 16 15 28 28 H 1.07994 * 119.55515 * 179.97438 * 18 17 16 29 29 H 1.08001 * 119.65856 * 179.97438 * 20 19 18 30 30 H 1.08998 * 117.49710 * 215.00120 * 21 9 7 31 31 H 1.09001 * 117.49481 * 0.02562 * 21 9 7 32 32 H 1.09008 * 117.49677 * 359.97325 * 22 9 7 33 33 H 1.08996 * 117.50264 * 144.96823 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0766 -1.1986 -0.1298 9 6 1.2622 -2.4927 0.1829 10 6 0.6625 -3.0943 -1.0897 11 16 1.9983 -3.5707 -2.2208 12 8 2.8071 -4.5837 -1.6387 13 8 2.5813 -2.4199 -2.8166 14 8 1.2898 -4.2711 -3.3716 15 6 0.6402 -3.4275 -4.2161 16 6 -0.6869 -3.0800 -3.9838 17 6 -1.3086 -2.2213 -4.8756 18 6 -0.5941 -1.7372 -5.9559 19 7 0.6645 -2.0819 -6.1442 20 6 1.2923 -2.8963 -5.3192 21 6 1.7854 -3.4626 1.2442 22 6 0.4885 -2.6869 1.4885 23 1 -0.4850 0.8368 -0.0736 24 1 0.0224 -2.3568 -1.5737 25 1 0.0729 -3.9744 -0.8327 26 1 -1.2207 -3.4734 -3.1312 27 1 -2.3392 -1.9336 -4.7291 28 1 -1.0735 -1.0677 -6.6547 29 1 2.3237 -3.1562 -5.5066 30 1 1.7024 -4.5293 1.0358 31 1 2.6663 -3.1611 1.8109 32 1 0.5169 -1.8754 2.2158 33 1 -0.4478 -3.2429 1.4408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831069046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:39 Heat of formation + Delta-G solvation = -62.220318 kcal Electronic energy + Delta-G solvation = -20840.151487 eV Core-core repulsion = 17573.154222 eV Total energy + Delta-G solvation = -3266.997265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.33749 -39.98955 -38.60775 -38.19724 -37.08388 -34.09673 -33.52526 -31.72509 -30.05776 -27.53839 -25.17282 -24.92823 -23.01324 -22.13440 -21.20981 -19.46192 -18.83068 -18.74843 -18.05402 -17.96471 -16.91428 -16.71022 -16.27454 -15.70947 -15.21491 -15.07283 -14.87088 -14.66605 -14.17274 -13.81267 -13.75951 -13.67553 -13.26679 -13.15940 -13.12218 -12.99416 -12.86893 -12.48039 -12.27685 -11.95576 -11.60648 -11.05265 -10.90104 -10.70686 -10.56250 -10.23832 -9.94229 -8.20795 -6.34618 -1.00086 -0.03748 0.04082 1.23150 1.39126 1.40284 1.47616 2.38863 2.55905 2.65759 2.98931 3.09051 3.31574 3.36433 3.48196 3.74068 3.76992 3.90947 4.00567 4.19565 4.45329 4.51197 4.56184 4.75623 4.76998 4.85561 4.93043 4.97183 5.18632 5.40651 5.53102 5.58129 5.70738 6.20279 6.70573 6.71559 7.37508 8.86054 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.008176 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.687539 B = 3423.872788 C = 4209.596139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.049 3.951 3 Si 0.931 3.069 4 H -0.280 1.280 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.012 3.988 10 C -0.568 4.568 11 S 2.596 3.404 12 O -0.968 6.968 13 O -0.976 6.976 14 O -0.668 6.668 15 C -0.008 4.008 16 C -0.089 4.089 17 C -0.142 4.142 18 C 0.110 3.890 19 N -0.486 5.486 20 C 0.111 3.889 21 C -0.201 4.201 22 C -0.132 4.132 23 H 0.267 0.733 24 H 0.135 0.865 25 H 0.142 0.858 26 H 0.174 0.826 27 H 0.193 0.807 28 H 0.208 0.792 29 H 0.165 0.835 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 -4.860 -8.420 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.155 4.155 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.010 3.990 10 C -0.699 4.699 11 S 2.698 3.302 12 O -0.966 6.966 13 O -0.974 6.974 14 O -0.625 6.625 15 C -0.052 4.052 16 C -0.116 4.116 17 C -0.161 4.161 18 C -0.048 4.048 19 N -0.196 5.196 20 C -0.048 4.048 21 C -0.238 4.238 22 C -0.171 4.171 23 H 0.076 0.924 24 H 0.153 0.847 25 H 0.160 0.840 26 H 0.191 0.809 27 H 0.210 0.790 28 H 0.225 0.775 29 H 0.182 0.818 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.528 -4.752 -9.370 12.369 hybrid contribution -0.079 0.598 1.349 1.477 sum -6.607 -4.154 -8.021 11.191 Atomic orbital electron populations 1.69976 1.06356 1.27898 1.47948 1.25429 0.95630 1.01198 0.93248 0.86034 0.79260 0.80283 0.78809 1.20533 1.19712 1.19487 1.20642 0.93222 0.90540 1.52981 0.93365 1.18345 1.00554 0.94349 0.85783 1.30083 1.16555 1.10267 1.13027 1.05306 0.77154 0.72830 0.74934 1.93498 1.66410 1.58770 1.77963 1.93542 1.76737 1.53536 1.73592 1.85733 1.73418 1.53028 1.50352 1.19502 0.94098 0.96938 0.94673 1.22364 0.91777 0.96056 1.01446 1.22641 1.03987 0.95768 0.93670 1.23822 0.88925 0.95664 0.96363 1.67867 1.11729 1.11534 1.28514 1.23133 1.00803 0.91516 0.89302 1.23295 0.98470 0.96976 1.05084 1.22538 0.93880 1.00722 1.00001 0.92399 0.84661 0.83977 0.80907 0.78973 0.77542 0.81783 0.88331 0.89791 0.91294 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.32 12.99 21.45 0.28 -46.04 16 2 C 0.05 2.58 5.38 84.66 0.46 3.03 16 3 Si 0.93 42.96 29.55 68.60 2.03 44.99 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -28.92 8.15 25.60 0.21 -28.71 16 8 H 0.05 2.72 7.83 -2.91 -0.02 2.70 16 9 C 0.01 0.55 1.32 -52.93 -0.07 0.48 16 10 C -0.57 -22.51 5.20 71.98 0.37 -22.14 16 11 S 2.60 108.38 4.91 -56.49 -0.28 108.10 16 12 O -0.97 -44.24 18.09 -118.57 -2.15 -46.38 16 13 O -0.98 -46.73 15.90 -118.57 -1.89 -48.61 16 14 O -0.67 -23.56 10.08 -61.57 -0.62 -24.19 16 15 C -0.01 -0.26 4.81 22.60 0.11 -0.16 16 16 C -0.09 -2.24 8.68 22.56 0.20 -2.05 16 17 C -0.14 -2.72 10.11 22.35 0.23 -2.49 16 18 C 0.11 2.29 11.18 84.70 0.95 3.23 16 19 N -0.49 -13.98 10.35 -195.44 -2.02 -16.01 16 20 C 0.11 3.60 10.22 84.81 0.87 4.46 16 21 C -0.20 -8.41 9.96 30.62 0.30 -8.11 16 22 C -0.13 -5.65 9.50 30.62 0.29 -5.36 16 23 H 0.27 13.27 8.32 -92.71 -0.77 12.49 16 24 H 0.14 5.41 6.98 -2.39 -0.02 5.39 16 25 H 0.14 4.42 8.09 -2.39 -0.02 4.40 16 26 H 0.17 3.48 7.64 -2.91 -0.02 3.45 16 27 H 0.19 1.99 8.06 -2.91 -0.02 1.96 16 28 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.16 5.09 8.06 -2.91 -0.02 5.07 16 30 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 31 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 32 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 33 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -70.04 303.30 0.38 -69.66 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 1.12 Total: 16.30 kcal Atomic # 6 Polarization: -61.72 SS G_CDS: 3.91 Total: -57.81 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -1.75 Total: -62.05 kcal Atomic # 8 Polarization: -114.53 SS G_CDS: -4.65 Total: -119.18 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 108.38 SS G_CDS: -0.28 Total: 108.10 kcal Total: -70.04 0.38 -69.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831069046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.435 kcal (2) G-P(sol) polarization free energy of solvation -70.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds