Wall clock time and date at job start Tue Mar 31 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 119.99959 * 2 1 4 4 H 1.48503 * 109.46946 * 239.99979 * 3 2 1 5 5 H 1.48503 * 109.46952 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47301 * 119.99880 * 3 2 1 7 7 C 1.38974 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00044 * 189.31140 * 7 2 1 9 9 N 1.36972 * 119.99818 * 9.31255 * 7 2 1 10 10 C 1.46497 * 119.99962 * 47.50805 * 9 7 2 11 11 C 1.50696 * 109.47423 * 95.50228 * 10 9 7 12 12 O 1.20826 * 119.99765 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00413 * 179.97438 * 11 10 9 14 14 C 1.34771 * 119.99980 * 227.50884 * 9 7 2 15 15 O 1.21645 * 120.00074 * 185.77098 * 14 9 7 16 16 C 1.47290 * 120.00182 * 5.76815 * 14 9 7 17 17 C 1.36837 * 122.90533 * 8.46546 * 16 14 9 18 18 S 1.70557 * 110.75516 * 179.97438 * 17 16 14 19 19 C 1.75682 * 91.92408 * 0.02562 * 18 17 16 20 20 C 1.41448 * 125.12491 * 180.02562 * 19 18 17 21 21 O 1.21424 * 120.00008 * 179.97438 * 20 19 18 22 22 C 1.36397 * 109.74844 * 359.75578 * 19 18 17 23 23 H 0.97007 * 120.00194 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47335 * 335.50076 * 10 9 7 25 25 H 1.09005 * 109.47483 * 215.50157 * 10 9 7 26 26 H 0.96704 * 117.00154 * 180.02562 * 13 11 10 27 27 H 1.07998 * 124.62413 * 359.97438 * 17 16 14 28 28 H 1.08002 * 120.00330 * 359.97294 * 20 19 18 29 29 H 1.08003 * 123.30944 * 180.23037 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2035 0.0005 8 1 3.0783 -1.2096 0.1519 9 7 1.3377 -2.3820 -0.1909 10 6 0.3725 -2.5057 -1.2860 11 6 1.0472 -3.1247 -2.4829 12 8 2.2145 -3.4316 -2.4267 13 8 0.3513 -3.3361 -3.6110 14 6 1.5651 -3.4278 0.6282 15 8 1.0497 -4.5051 0.3967 16 6 2.4377 -3.2664 1.8038 17 6 2.9115 -2.0509 2.2166 18 16 3.8884 -2.2225 3.6041 19 6 3.6538 -3.9634 3.6265 20 6 4.2128 -4.8478 4.5784 21 8 3.9883 -6.0389 4.5058 22 6 2.8464 -4.3330 2.5911 23 1 -0.4851 0.8401 -0.0004 24 1 -0.0041 -1.5178 -1.5517 25 1 -0.4573 -3.1377 -0.9695 26 1 0.8270 -3.7359 -4.3519 27 1 2.6963 -1.1110 1.7302 28 1 4.8394 -4.4637 5.3698 29 1 2.5561 -5.3558 2.4012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066395.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:06 Heat of formation + Delta-G solvation = -108.477507 kcal Electronic energy + Delta-G solvation = -19840.092963 eV Core-core repulsion = 16435.256741 eV Total energy + Delta-G solvation = -3404.836222 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.86102 -39.15867 -38.50657 -36.13476 -35.42767 -35.02152 -31.93226 -30.34833 -27.88373 -25.86553 -24.91150 -23.17416 -21.07913 -19.62466 -18.84652 -18.19398 -17.45327 -16.77124 -16.36108 -15.66359 -15.17911 -14.97501 -14.94522 -14.56363 -14.27317 -14.00076 -13.60721 -13.16063 -12.50716 -12.39718 -12.21369 -11.85696 -11.71547 -11.45099 -11.31084 -10.98997 -10.81812 -10.76954 -10.58765 -9.87438 -9.77732 -9.39374 -8.86213 -8.43956 -8.17707 -7.80003 -6.77225 -4.57795 0.67792 1.88017 2.18012 2.25612 2.88874 2.99525 3.00250 3.01538 3.11842 3.55355 3.82078 4.24393 4.42272 4.73497 4.77351 5.51570 5.74014 5.86747 5.98252 6.06939 6.17172 6.39227 6.54821 6.68223 6.79135 7.02352 7.10898 7.54057 7.61855 7.94482 8.60312 8.64630 9.09153 9.54187 10.25328 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.007317 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.345294 B = 3825.637408 C = 5247.431543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.342 4.342 8 H 0.098 0.902 9 N -0.422 5.422 10 C 0.133 3.867 11 C 0.460 3.540 12 O -0.513 6.513 13 O -0.527 6.527 14 C 0.550 3.450 15 O -0.589 6.589 16 C -0.158 4.158 17 C -0.150 4.150 18 S 0.174 5.826 19 C -0.359 4.359 20 C 0.413 3.587 21 O -0.474 6.474 22 C 0.016 3.984 23 H 0.280 0.720 24 H 0.139 0.861 25 H 0.100 0.900 26 H 0.395 0.605 27 H 0.226 0.774 28 H 0.095 0.905 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 2.744 2.984 5.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.164 4.164 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.470 4.470 8 H 0.115 0.885 9 N -0.141 5.141 10 C 0.007 3.993 11 C 0.301 3.699 12 O -0.400 6.400 13 O -0.338 6.338 14 C 0.339 3.661 15 O -0.474 6.474 16 C -0.172 4.172 17 C -0.289 4.289 18 S 0.441 5.559 19 C -0.476 4.476 20 C 0.274 3.726 21 O -0.351 6.351 22 C -0.017 4.017 23 H 0.091 0.909 24 H 0.157 0.843 25 H 0.118 0.882 26 H 0.253 0.747 27 H 0.242 0.758 28 H 0.111 0.889 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.394 2.848 4.110 6.656 hybrid contribution -0.133 -0.155 -1.647 1.660 sum 4.261 2.693 2.462 5.610 Atomic orbital electron populations 1.69765 1.06142 1.29026 1.43575 1.25683 0.95635 1.00140 0.94937 0.86167 0.79511 0.80446 0.79920 1.19120 1.20136 1.18923 1.19487 0.92613 0.82864 1.52082 0.88488 1.42717 1.37843 1.11348 1.22145 1.20924 0.92083 1.03539 0.82756 1.25032 0.86094 0.74820 0.83953 1.90634 1.18257 1.48090 1.83005 1.84601 1.48158 1.76588 1.24455 1.17768 0.81938 0.84330 0.82015 1.90659 1.54510 1.26979 1.75285 1.19111 1.05211 0.92274 1.00651 1.28665 0.96902 1.06227 0.97063 1.82767 1.46410 1.00679 1.26005 1.24130 1.15688 0.99490 1.08266 1.21586 0.78829 0.87463 0.84690 1.90570 1.53650 1.18472 1.72427 1.20948 0.90410 1.00583 0.89803 0.90933 0.84326 0.88212 0.74748 0.75811 0.88918 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.44 11.57 55.50 0.64 -18.80 15 2 C 0.05 0.99 4.92 -17.46 -0.09 0.90 15 3 Si 0.92 16.74 29.51 -169.99 -5.02 11.73 15 4 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 5 H -0.28 -5.09 7.11 56.52 0.40 -4.68 15 6 H -0.26 -4.59 7.11 56.52 0.40 -4.18 15 7 C -0.34 -7.77 5.96 -14.98 -0.09 -7.86 15 8 H 0.10 2.15 6.22 -52.49 -0.33 1.82 15 9 N -0.42 -10.10 2.00 -117.36 -0.23 -10.34 15 10 C 0.13 2.97 5.39 -5.20 -0.03 2.94 15 11 C 0.46 9.88 8.35 36.00 0.30 10.18 15 12 O -0.51 -12.55 17.06 -18.75 -0.32 -12.87 15 13 O -0.53 -8.95 13.42 -39.25 -0.53 -9.47 15 14 C 0.55 13.57 7.40 -12.58 -0.09 13.48 15 15 O -0.59 -15.78 16.45 5.24 0.09 -15.70 15 16 C -0.16 -3.38 5.74 -106.54 -0.61 -3.99 15 17 C -0.15 -2.79 9.07 30.23 0.27 -2.51 15 18 S 0.17 2.48 23.02 -107.50 -2.47 0.01 15 19 C -0.36 -5.85 6.22 -39.02 -0.24 -6.10 15 20 C 0.41 6.02 11.46 31.95 0.37 6.38 15 21 O -0.47 -8.64 17.51 5.43 0.10 -8.54 15 22 C 0.02 0.32 9.47 -40.06 -0.38 -0.06 15 23 H 0.28 6.02 8.31 -40.82 -0.34 5.68 15 24 H 0.14 3.09 5.95 -51.93 -0.31 2.78 15 25 H 0.10 2.21 7.68 -51.93 -0.40 1.81 15 26 H 0.40 4.78 9.10 45.56 0.41 5.20 15 27 H 0.23 4.32 4.26 -52.49 -0.22 4.10 15 28 H 0.09 0.94 8.06 -52.49 -0.42 0.51 15 29 H 0.15 3.14 7.93 -52.48 -0.42 2.73 15 LS Contribution 283.37 15.07 4.27 4.27 Total: -1.00 -30.29 283.37 -4.89 -35.18 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -0.82 Total: 11.18 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -0.59 Total: 13.36 kcal Atomic # 7 Polarization: -29.55 SS G_CDS: 0.41 Total: -29.14 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -0.67 Total: -46.58 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.02 Total: 11.73 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.47 Total: 0.01 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.29 -4.89 -35.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066395.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.299 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds