Wall clock time and date at job start Tue Mar 31 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.75501 * 124.70446 * 2 1 4 4 C 1.70447 * 92.45316 * 180.02562 * 3 2 1 5 5 C 1.36097 * 110.80860 * 359.69971 * 4 3 2 6 6 C 1.47108 * 123.47163 * 180.25492 * 5 4 3 7 7 O 1.21665 * 120.00237 * 127.28613 * 6 5 4 8 8 N 1.34775 * 120.00088 * 307.28812 * 6 5 4 9 9 C 1.36970 * 120.00074 * 184.12797 * 8 6 5 10 10 H 1.07995 * 120.00198 * 337.49546 * 9 8 6 11 11 C 1.38978 * 119.99588 * 157.49652 * 9 8 6 12 12 N 1.31411 * 120.00341 * 355.12511 * 11 9 8 13 13 Si 1.86803 * 119.99621 * 175.12752 * 11 9 8 14 14 H 1.48504 * 109.46924 * 90.00043 * 13 11 9 15 15 H 1.48498 * 109.47139 * 210.00002 * 13 11 9 16 16 H 1.48502 * 109.47351 * 330.00071 * 13 11 9 17 17 C 1.46509 * 119.99635 * 4.12842 * 8 6 5 18 18 C 1.50697 * 109.46752 * 276.89401 * 17 8 6 19 19 O 1.20824 * 120.00632 * 0.02562 * 18 17 8 20 20 O 1.34233 * 119.99518 * 180.02562 * 18 17 8 21 21 C 1.32767 * 124.70179 * 179.73763 * 2 1 3 22 22 C 1.50696 * 123.45845 * 359.97438 * 21 2 1 23 23 H 1.08996 * 109.47774 * 270.25632 * 1 2 3 24 24 H 1.09001 * 109.47132 * 30.26373 * 1 2 3 25 25 H 1.09005 * 109.47301 * 150.25539 * 1 2 3 26 26 H 1.08006 * 124.59724 * 179.97438 * 4 3 2 27 27 H 0.96994 * 120.00047 * 179.97438 * 12 11 9 28 28 H 1.08995 * 109.47239 * 36.89572 * 17 8 6 29 29 H 1.09000 * 109.46835 * 156.89373 * 17 8 6 30 30 H 0.96703 * 116.99464 * 180.02562 * 20 18 17 31 31 H 1.09000 * 109.46946 * 270.02373 * 22 21 2 32 32 H 1.09006 * 109.47073 * 30.02133 * 22 21 2 33 33 H 1.09003 * 109.47117 * 150.01746 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5062 1.4428 0.0000 4 6 3.9477 0.5332 -0.0008 5 6 3.6777 -0.8007 0.0057 6 6 4.7194 -1.8393 0.0122 7 8 4.6986 -2.7166 0.8549 8 7 5.6970 -1.8190 -0.9154 9 6 6.6179 -2.8319 -0.9621 10 1 6.8032 -3.4341 -0.0850 11 6 7.3137 -3.0846 -2.1383 12 7 7.0210 -2.4166 -3.2314 13 14 8.6651 -4.3741 -2.1653 14 1 8.0829 -5.6938 -2.5186 15 1 9.6878 -3.9982 -3.1742 16 1 9.2986 -4.4554 -0.8247 17 6 5.7747 -0.7135 -1.8737 18 6 4.8339 -0.9766 -3.0212 19 8 4.1666 -1.9837 -3.0368 20 8 4.7373 -0.0918 -4.0260 21 6 2.2628 -1.0915 0.0050 22 6 1.7022 -2.4903 0.0120 23 1 -0.3634 0.0046 1.0276 24 1 -0.3633 0.8876 -0.5179 25 1 -0.3634 -0.8923 -0.5099 26 1 4.9407 0.9579 -0.0014 27 1 7.5070 -2.5927 -4.0522 28 1 5.4937 0.2163 -1.3793 29 1 6.7939 -0.6308 -2.2510 30 1 4.1201 -0.3038 -4.7397 31 1 1.5670 -2.8224 1.0413 32 1 0.7409 -2.4990 -0.5018 33 1 2.3931 -3.1612 -0.4986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833759081.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:04 Heat of formation + Delta-G solvation = -82.315309 kcal Electronic energy + Delta-G solvation = -20962.662692 eV Core-core repulsion = 17694.794042 eV Total energy + Delta-G solvation = -3267.868649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.64193 -38.47970 -36.89986 -35.18414 -34.46774 -32.43131 -31.30551 -29.08506 -27.71769 -25.79033 -24.79818 -22.99638 -21.00670 -19.49833 -18.05751 -17.25707 -16.87053 -16.71872 -16.03612 -15.46100 -14.88470 -14.47374 -14.21363 -14.10517 -13.93888 -13.17952 -12.97542 -12.60277 -12.46586 -12.14368 -11.89891 -11.84965 -11.56534 -11.45491 -11.26070 -11.15398 -10.91061 -10.52552 -10.46668 -10.41440 -10.33637 -9.62031 -9.07971 -8.66483 -8.23402 -7.94647 -7.80402 -6.46662 -4.01255 1.29850 1.93064 2.31295 2.69442 3.15344 3.21213 3.26147 3.53711 3.70960 4.12219 4.28639 4.74425 4.99718 5.10661 5.31061 5.38891 5.59649 5.65694 5.78021 5.88421 5.99066 6.02356 6.16288 6.30938 6.45299 6.51730 6.67263 6.71020 6.96369 7.45010 7.54111 7.95907 8.31958 9.00613 9.06970 9.23897 9.77913 10.59095 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.023457 B = 0.006653 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.403928 B = 4207.862000 C = 4636.103735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.213 4.213 3 S 0.133 5.867 4 C -0.243 4.243 5 C -0.102 4.102 6 C 0.518 3.482 7 O -0.567 6.567 8 N -0.423 5.423 9 C -0.295 4.295 10 H 0.108 0.892 11 C 0.029 3.971 12 N -0.892 5.892 13 Si 0.939 3.061 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.268 1.268 17 C 0.137 3.863 18 C 0.496 3.504 19 O -0.510 6.510 20 O -0.533 6.533 21 C -0.055 4.055 22 C -0.088 4.088 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.169 0.831 27 H 0.272 0.728 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.390 0.610 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 8.829 0.866 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.329 4.329 3 S 0.400 5.600 4 C -0.380 4.380 5 C -0.120 4.120 6 C 0.305 3.695 7 O -0.451 6.451 8 N -0.141 5.141 9 C -0.423 4.423 10 H 0.125 0.875 11 C -0.173 4.173 12 N -0.533 5.533 13 Si 0.765 3.235 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.193 1.193 17 C 0.011 3.989 18 C 0.337 3.663 19 O -0.396 6.396 20 O -0.344 6.344 21 C -0.067 4.067 22 C -0.147 4.147 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.186 0.814 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.156 0.844 30 H 0.246 0.754 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.773 9.750 1.420 12.550 hybrid contribution 0.796 -2.210 -0.952 2.534 sum -6.977 7.540 0.467 10.284 Atomic orbital electron populations 1.20262 0.88061 1.02728 1.02264 1.23947 0.99760 0.95557 1.13638 1.82522 0.94831 1.09128 1.73519 1.25457 1.03530 0.97212 1.11767 1.20490 0.94392 0.93224 1.03869 1.17391 0.81038 0.85560 0.85476 1.90639 1.75731 1.38927 1.39790 1.43283 1.24262 1.20482 1.26103 1.19774 1.13650 1.10507 0.98359 0.87465 1.25354 0.99517 0.98222 0.94162 1.69639 1.41380 1.41482 1.00755 0.85723 0.79377 0.80167 0.78221 1.20265 1.20771 1.19277 1.21063 1.01509 0.89499 0.86837 1.23724 0.79993 0.80087 0.82506 1.90585 1.43982 1.27076 1.77907 1.84525 1.63799 1.52156 1.33920 1.19687 0.90659 0.96284 1.00079 1.20434 1.00214 0.91838 1.02204 0.91155 0.91741 0.90691 0.81362 0.91685 0.90433 0.84359 0.75398 0.91053 0.92053 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.04 36.00 0.36 -0.51 16 2 C -0.21 -3.34 6.44 -36.18 -0.23 -3.58 16 3 S 0.13 1.92 23.00 -107.50 -2.47 -0.55 16 4 C -0.24 -4.29 8.90 29.96 0.27 -4.02 16 5 C -0.10 -2.17 4.95 -104.63 -0.52 -2.69 16 6 C 0.52 13.24 6.41 -12.66 -0.08 13.16 16 7 O -0.57 -16.13 16.48 5.22 0.09 -16.04 16 8 N -0.42 -10.91 2.19 -117.42 -0.26 -11.17 16 9 C -0.30 -8.12 9.33 -14.98 -0.14 -8.26 16 10 H 0.11 3.05 7.35 -52.49 -0.39 2.66 16 11 C 0.03 0.76 5.22 -17.46 -0.09 0.67 16 12 N -0.89 -23.19 8.79 55.50 0.49 -22.70 16 13 Si 0.94 20.64 29.56 -169.99 -5.02 15.61 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 C 0.14 3.10 4.90 -5.19 -0.03 3.07 16 18 C 0.50 11.41 6.17 36.00 0.22 11.63 16 19 O -0.51 -13.51 16.87 -18.75 -0.32 -13.83 16 20 O -0.53 -10.06 13.42 -39.27 -0.53 -10.59 16 21 C -0.06 -1.06 6.01 -104.06 -0.63 -1.68 16 22 C -0.09 -1.61 9.45 36.00 0.34 -1.27 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.84 6.66 -51.93 -0.35 0.49 16 26 H 0.17 2.68 6.64 -52.48 -0.35 2.33 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.08 1.50 4.28 -51.93 -0.22 1.28 16 29 H 0.14 3.24 6.20 -51.93 -0.32 2.91 16 30 H 0.39 5.72 9.10 45.56 0.41 6.13 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.92 6.64 -51.93 -0.34 0.58 16 33 H 0.08 1.65 7.66 -51.93 -0.40 1.25 16 LS Contribution 296.72 15.07 4.47 4.47 Total: -1.00 -33.26 296.72 -6.43 -39.68 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -2.35 Total: 8.59 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.52 Total: 6.52 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.23 Total: -33.87 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.76 Total: -40.46 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.47 Total: -0.55 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.26 -6.43 -39.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833759081.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.631 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds