Wall clock time and date at job start Tue Mar 31 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33860 * 122.44276 * 2 1 4 4 S 1.70620 * 110.96129 * 179.75684 * 3 2 1 5 5 C 1.75831 * 91.56271 * 0.24476 * 4 3 2 6 6 C 1.46397 * 125.45992 * 180.02562 * 5 4 3 7 7 O 1.21629 * 119.99970 * 179.97438 * 6 5 4 8 8 O 1.34898 * 120.00085 * 359.97052 * 6 5 4 9 9 C 1.45205 * 116.99979 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46853 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00084 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99582 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00055 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47335 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00207 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00038 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00033 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47437 * 90.00104 * 18 16 14 20 20 H 1.48504 * 109.47520 * 210.00191 * 18 16 14 21 21 H 1.48506 * 109.47238 * 330.00248 * 18 16 14 22 22 C 1.36746 * 109.07512 * 359.97438 * 5 4 3 23 23 H 1.09003 * 109.47436 * 90.02333 * 1 2 3 24 24 H 1.09003 * 109.47161 * 210.02473 * 1 2 3 25 25 H 1.09003 * 109.47328 * 330.02263 * 1 2 3 26 26 H 1.08002 * 124.52208 * 0.02748 * 3 2 1 27 27 H 1.09003 * 109.47064 * 300.00425 * 9 8 6 28 28 H 1.09000 * 109.46638 * 60.00145 * 9 8 6 29 29 H 0.97004 * 120.00241 * 0.02562 * 12 10 9 30 30 H 1.09003 * 109.47145 * 300.00005 * 13 12 10 31 31 H 1.08997 * 109.47442 * 59.99478 * 13 12 10 32 32 H 0.97004 * 119.99703 * 180.02562 * 17 16 14 33 33 H 1.08010 * 123.35458 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1297 0.0000 4 16 3.8971 0.7901 0.0068 5 6 3.5942 -0.9420 0.0021 6 6 4.6225 -1.9839 0.0052 7 8 4.3000 -3.1567 0.0020 8 8 5.9278 -1.6434 0.0116 9 6 6.8923 -2.7289 0.0138 10 6 8.2880 -2.1607 0.0216 11 8 8.4536 -0.9593 0.0255 12 7 9.3522 -2.9877 0.0243 13 6 10.7090 -2.4354 0.0325 14 6 11.7100 -3.5620 0.0334 15 1 11.3695 -4.5869 0.0287 16 6 13.0605 -3.2843 0.0401 17 7 13.4751 -2.0362 0.0452 18 14 14.3012 -4.6807 0.0419 19 1 14.6362 -5.0470 -1.3577 20 1 15.5333 -4.2473 0.7485 21 1 13.7205 -5.8580 0.7362 22 6 2.2442 -1.1596 -0.0037 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 1.8024 2.1236 0.0004 27 1 6.7455 -3.3436 0.9019 28 1 6.7533 -3.3401 -0.8780 29 1 9.2197 -3.9487 0.0208 30 1 10.8562 -1.8199 -0.8550 31 1 10.8476 -1.8251 0.9249 32 1 14.4253 -1.8409 0.0495 33 1 1.8015 -2.1448 -0.0070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837760555.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:02 Heat of formation + Delta-G solvation = -117.839388 kcal Electronic energy + Delta-G solvation = -18526.710085 eV Core-core repulsion = 15257.300996 eV Total energy + Delta-G solvation = -3269.409089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.72290 -40.42835 -39.24867 -37.51619 -36.19910 -34.42985 -32.36742 -30.79974 -28.90773 -28.46346 -25.99315 -24.51632 -22.19533 -21.68348 -20.15686 -19.75689 -19.06722 -18.14900 -17.89973 -17.58159 -16.96885 -16.83216 -16.26032 -16.11026 -15.19442 -14.98121 -14.64421 -14.45806 -14.12891 -14.08155 -13.83005 -13.70932 -13.22803 -12.94722 -12.93430 -12.80336 -12.72201 -12.23558 -12.01696 -12.00122 -11.73685 -11.50585 -10.94932 -10.82362 -10.00525 -9.94702 -9.44681 -8.30057 -6.46640 -0.70982 0.41884 0.94346 1.09299 1.13241 1.44450 1.46050 1.52119 1.57568 1.78462 2.32660 2.53800 3.05203 3.56336 3.72707 3.99315 4.01388 4.02259 4.11157 4.34106 4.67124 4.74049 4.90452 5.01834 5.04803 5.09998 5.21053 5.36001 5.40413 5.45686 5.61778 5.81315 6.40237 6.61980 6.75677 7.19219 7.33862 8.82051 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.052732 B = 0.002685 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.854720 B =10425.118387 C =10930.219492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.133 4.133 3 C -0.217 4.217 4 S 0.244 5.756 5 C -0.299 4.299 6 C 0.541 3.459 7 O -0.520 6.520 8 O -0.346 6.346 9 C 0.061 3.939 10 C 0.500 3.500 11 O -0.582 6.582 12 N -0.698 5.698 13 C 0.266 3.734 14 C -0.557 4.557 15 H 0.086 0.914 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.986 3.014 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.256 1.256 22 C -0.030 4.030 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.202 0.798 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.413 0.587 30 H -0.007 1.007 31 H -0.007 1.007 32 H 0.269 0.731 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.263 1.968 -0.108 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C -0.355 4.355 4 S 0.515 5.485 5 C -0.417 4.417 6 C 0.387 3.613 7 O -0.412 6.412 8 O -0.262 6.262 9 C -0.015 4.015 10 C 0.286 3.714 11 O -0.462 6.462 12 N -0.349 5.349 13 C 0.144 3.856 14 C -0.595 4.595 15 H 0.104 0.896 16 C -0.196 4.196 17 N -0.568 5.568 18 Si 0.809 3.191 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.179 1.179 22 C -0.065 4.065 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.219 0.781 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.249 0.751 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.078 0.922 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -24.678 3.516 -0.091 24.928 hybrid contribution -0.147 -1.632 -0.026 1.639 sum -24.826 1.884 -0.116 24.897 Atomic orbital electron populations 1.20585 0.86853 1.04097 1.03459 1.19021 0.99600 0.90519 1.05354 1.25856 0.98289 1.05033 1.06308 1.83867 1.03575 0.95884 1.65208 1.23506 0.95861 0.97805 1.24536 1.19978 0.81334 0.87650 0.72320 1.90858 1.82729 1.19802 1.47768 1.86627 1.16037 1.39262 1.84255 1.22809 0.83456 0.87835 1.07445 1.20611 0.87013 0.86896 0.76878 1.90687 1.87165 1.16941 1.51422 1.46031 1.05892 1.10522 1.72466 1.18639 0.77748 0.94559 0.94641 1.21605 0.91324 0.93475 1.53049 0.89578 1.26059 1.00886 0.98794 0.93847 1.70134 1.16311 1.20553 1.49827 0.85144 0.77161 0.78263 0.78568 1.19632 1.21014 1.17930 1.20940 0.89616 1.01492 0.94481 0.90151 0.90602 0.89891 0.78085 0.85533 0.85522 0.75057 0.98924 0.98903 0.92196 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.13 71.23 0.72 0.00 16 2 C -0.13 -1.91 5.78 -21.06 -0.12 -2.03 16 3 C -0.22 -3.00 10.67 66.82 0.71 -2.29 16 4 S 0.24 5.05 22.92 -56.49 -1.29 3.76 16 5 C -0.30 -7.32 6.45 24.05 0.16 -7.16 16 6 C 0.54 16.06 7.92 69.95 0.55 16.62 16 7 O -0.52 -16.35 16.64 19.41 0.32 -16.03 16 8 O -0.35 -11.46 9.61 -51.73 -0.50 -11.96 16 9 C 0.06 1.84 5.96 71.24 0.42 2.26 16 10 C 0.50 20.39 7.91 87.66 0.69 21.08 16 11 O -0.58 -29.58 16.50 15.78 0.26 -29.32 16 12 N -0.70 -29.02 5.55 -466.80 -2.59 -31.61 16 13 C 0.27 14.44 5.43 85.63 0.46 14.90 16 14 C -0.56 -29.83 9.28 25.60 0.24 -29.59 16 15 H 0.09 4.14 7.60 -2.91 -0.02 4.11 16 16 C 0.00 0.22 5.46 84.65 0.46 0.68 16 17 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 18 Si 0.99 41.94 29.54 68.60 2.03 43.97 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 C -0.03 -0.58 9.80 21.72 0.21 -0.36 16 23 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.08 0.53 8.13 -2.39 -0.02 0.51 16 25 H 0.08 0.43 8.12 -2.39 -0.02 0.41 16 26 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 27 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.41 13.79 8.32 -92.71 -0.77 13.02 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -74.69 317.44 3.40 -71.28 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.37 Total: 11.14 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 4.52 Total: 14.09 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.30 Total: -86.94 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: 0.09 Total: -57.30 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.29 Total: 3.76 kcal Total: -74.69 3.40 -71.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837760555.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.557 kcal (2) G-P(sol) polarization free energy of solvation -74.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds