Wall clock time and date at job start Tue Mar 31 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70448 * 124.59533 * 2 1 4 4 C 1.75493 * 92.45463 * 179.73425 * 3 2 1 5 5 C 1.32738 * 110.60052 * 359.97438 * 4 3 2 6 6 C 1.36098 * 124.59739 * 179.69661 * 2 1 3 7 7 C 1.47037 * 123.47604 * 0.26470 * 6 2 1 8 8 O 1.21561 * 119.99673 * 0.02562 * 7 6 2 9 9 O 1.34792 * 120.00057 * 180.02562 * 7 6 2 10 10 C 1.45206 * 116.99829 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.46730 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00210 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99676 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99801 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46879 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00200 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99909 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00094 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00147 * 0.02562 * 17 15 14 20 20 H 1.48508 * 109.47259 * 89.99688 * 19 17 15 21 21 H 1.48498 * 109.47413 * 209.99799 * 19 17 15 22 22 H 1.48500 * 109.46995 * 330.00122 * 19 17 15 23 23 H 1.08994 * 109.47426 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47213 * 120.02716 * 1 2 3 25 25 H 1.09006 * 109.47455 * 240.02419 * 1 2 3 26 26 H 1.08004 * 124.70299 * 180.02562 * 4 3 2 27 27 H 1.08003 * 123.45529 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.46934 * 299.99294 * 10 9 7 29 29 H 1.08994 * 109.47050 * 60.00305 * 10 9 7 30 30 H 0.97005 * 119.99961 * 0.02562 * 13 11 10 31 31 H 1.09003 * 109.47348 * 299.99942 * 14 13 11 32 32 H 1.08998 * 109.47410 * 60.00673 * 14 13 11 33 33 H 0.97000 * 119.99647 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4748 1.4031 0.0000 4 6 3.9607 0.4695 0.0081 5 6 3.6952 -0.8311 0.0111 6 6 2.2798 -1.1203 0.0059 7 6 1.7307 -2.4843 0.0075 8 8 0.5272 -2.6550 0.0029 9 8 2.5619 -3.5454 0.0140 10 6 1.9499 -4.8622 0.0146 11 6 3.0267 -5.9165 0.0216 12 8 4.1949 -5.5903 0.0261 13 7 2.6916 -7.2220 0.0238 14 6 3.7383 -8.2469 0.0312 15 6 3.1031 -9.6135 0.0316 16 1 2.0274 -9.7090 0.0273 17 6 3.8954 -10.7419 0.0376 18 7 3.3411 -11.9346 0.0385 19 14 5.7561 -10.5768 0.0457 20 1 6.2428 -10.5301 1.4480 21 1 6.3596 -11.7422 -0.6492 22 1 6.1451 -9.3267 -0.6551 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3633 -0.5142 -0.8897 25 1 -0.3634 -0.5135 0.8902 26 1 4.9537 0.8942 0.0112 27 1 4.4589 -1.5947 0.0165 28 1 1.3269 -4.9728 0.9021 29 1 1.3350 -4.9774 -0.8779 30 1 1.7573 -7.4828 0.0205 31 1 4.3612 -8.1365 -0.8565 32 1 4.3535 -8.1316 0.9235 33 1 3.8985 -12.7284 0.0430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838106706.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:27 Heat of formation + Delta-G solvation = -94.073466 kcal Electronic energy + Delta-G solvation = -18850.078559 eV Core-core repulsion = 15581.700037 eV Total energy + Delta-G solvation = -3268.378521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62350 -38.96358 -37.61195 -36.25435 -34.37904 -32.43859 -32.29783 -29.74699 -27.98916 -26.80181 -24.21000 -22.26655 -21.80992 -20.12623 -19.87367 -17.77290 -17.56912 -16.84914 -16.66337 -16.55639 -15.74784 -15.17343 -14.91929 -14.42930 -14.10946 -13.92865 -13.72033 -13.19547 -13.04026 -12.98623 -12.51201 -12.43368 -12.36746 -12.06593 -11.97113 -11.39925 -11.07657 -10.83307 -10.72313 -10.57038 -10.00819 -9.55035 -9.35005 -9.14690 -8.84463 -8.82436 -8.27528 -6.24846 -4.27911 0.37280 1.08963 1.49917 1.60523 2.49299 2.88465 3.03494 3.24887 3.31773 3.39558 3.91477 4.30363 4.31860 4.58381 4.79266 4.95053 5.09847 5.11417 5.18124 5.22932 5.30988 5.33427 5.58329 5.72212 5.79509 5.96755 6.27240 6.72517 7.00229 7.08918 7.31067 7.64057 8.04410 8.40671 8.67456 8.79328 9.34248 10.86935 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.041307 B = 0.002905 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.690023 B = 9636.048481 C =10287.988231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.136 4.136 3 S 0.190 5.810 4 C -0.243 4.243 5 C -0.082 4.082 6 C -0.160 4.160 7 C 0.528 3.472 8 O -0.508 6.508 9 O -0.324 6.324 10 C 0.051 3.949 11 C 0.502 3.498 12 O -0.537 6.537 13 N -0.699 5.699 14 C 0.222 3.778 15 C -0.546 4.546 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.260 1.260 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.172 0.828 27 H 0.161 0.839 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.399 0.601 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.941 26.860 -0.105 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.256 4.256 3 S 0.455 5.545 4 C -0.378 4.378 5 C -0.110 4.110 6 C -0.176 4.176 7 C 0.372 3.628 8 O -0.399 6.399 9 O -0.239 6.239 10 C -0.027 4.027 11 C 0.286 3.714 12 O -0.414 6.414 13 N -0.350 5.350 14 C 0.101 3.899 15 C -0.584 4.584 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.528 5.528 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.185 1.185 23 H 0.086 0.914 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.189 0.811 27 H 0.179 0.821 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.233 0.767 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.665 28.321 -0.109 28.557 hybrid contribution 0.734 -1.973 0.030 2.105 sum -2.931 26.348 -0.079 26.510 Atomic orbital electron populations 1.20493 0.86362 1.02466 1.04895 1.24637 1.02005 0.97048 1.01880 1.83059 0.95044 1.06568 1.69797 1.25444 1.02309 0.97081 1.12922 1.21407 0.94631 0.96570 0.98383 1.19274 0.93442 0.90120 1.14750 1.20389 0.84502 0.85009 0.72895 1.90838 1.15715 1.86744 1.46558 1.86621 1.39268 1.14235 1.83740 1.22822 0.95424 0.79550 1.04884 1.19924 0.89426 0.83702 0.78387 1.90695 1.19409 1.81618 1.49705 1.46062 1.11853 1.04539 1.72534 1.19553 0.87240 0.86091 0.97060 1.21067 0.95641 0.88041 1.53626 0.90118 1.24792 0.99094 0.94902 0.93793 1.69880 1.36074 0.97652 1.49183 0.86815 0.85271 0.78493 0.79110 1.19786 1.20841 1.18458 0.91379 0.89275 0.89277 0.81068 0.82114 0.88242 0.88252 0.76690 0.95427 0.95879 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 8.77 36.01 0.32 -0.39 16 2 C -0.14 -1.34 6.35 -35.08 -0.22 -1.57 16 3 S 0.19 1.40 22.95 -107.50 -2.47 -1.07 16 4 C -0.24 -2.00 11.12 28.85 0.32 -1.68 16 5 C -0.08 -0.88 10.13 -39.01 -0.40 -1.27 16 6 C -0.16 -1.94 5.98 -104.65 -0.63 -2.57 16 7 C 0.53 7.55 7.92 34.30 0.27 7.82 16 8 O -0.51 -7.60 14.44 -19.31 -0.28 -7.88 16 9 O -0.32 -5.11 9.48 -47.42 -0.45 -5.56 16 10 C 0.05 0.75 5.96 36.01 0.21 0.97 16 11 C 0.50 9.60 7.91 -10.98 -0.09 9.51 16 12 O -0.54 -12.36 16.50 -14.10 -0.23 -12.59 16 13 N -0.70 -13.87 5.55 -61.47 -0.34 -14.21 16 14 C 0.22 5.38 4.50 -5.19 -0.02 5.36 16 15 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 16 16 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 17 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 19 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 23 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 24 H 0.09 0.81 7.78 -51.93 -0.40 0.41 16 25 H 0.09 0.81 7.78 -51.93 -0.40 0.41 16 26 H 0.17 0.98 8.06 -52.48 -0.42 0.55 16 27 H 0.16 1.76 8.06 -52.48 -0.42 1.33 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.40 6.82 8.32 -40.82 -0.34 6.48 16 31 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 32 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -33.13 310.35 -7.26 -40.39 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -3.61 Total: 2.02 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.67 Total: 3.16 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.43 Total: -39.68 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.96 Total: -26.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.47 Total: -1.07 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.13 -7.26 -40.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838106706.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.684 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds