Wall clock time and date at job start Tue Mar 31 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47214 * 2 1 4 4 H 1.08996 * 109.47105 * 305.17150 * 3 2 1 5 5 C 1.50699 * 109.46613 * 185.17368 * 3 2 1 6 6 H 1.08006 * 119.99768 * 244.94261 * 5 3 2 7 7 C 1.37873 * 120.00437 * 64.94592 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.03134 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.02845 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 O 1.45192 * 109.47070 * 65.17553 * 3 2 1 14 14 C 1.34815 * 116.99987 * 269.99410 * 13 3 2 15 15 O 1.21529 * 119.99639 * 0.02562 * 14 13 3 16 16 C 1.47089 * 119.99927 * 180.02562 * 14 13 3 17 17 C 1.37422 * 126.15383 * 180.02562 * 16 14 13 18 18 N 1.30165 * 113.99761 * 179.97438 * 17 16 14 19 19 C 1.30490 * 117.40888 * 359.97438 * 18 17 16 20 20 C 1.46990 * 124.73908 * 180.02562 * 19 18 17 21 21 C 1.50701 * 120.00090 * 359.97438 * 20 19 18 22 22 O 1.21270 * 119.99630 * 179.97438 * 20 19 18 23 23 S 1.70923 * 110.51991 * 359.76204 * 19 18 17 24 24 H 1.08991 * 109.47756 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46786 * 59.99620 * 1 2 3 26 26 H 1.09003 * 109.47308 * 300.00548 * 1 2 3 27 27 H 1.09005 * 109.46594 * 119.99631 * 2 1 3 28 28 H 1.08995 * 109.47033 * 239.99432 * 2 1 3 29 29 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 30 30 H 1.07999 * 122.99749 * 359.96372 * 17 16 14 31 31 H 1.08997 * 109.47186 * 89.99701 * 21 20 19 32 32 H 1.08998 * 109.46751 * 209.99710 * 21 20 19 33 33 H 1.08998 * 109.47092 * 329.99740 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6031 1.9823 -0.8400 5 6 3.5416 1.4443 -0.1281 6 1 4.1522 1.8154 0.6818 7 6 4.1359 0.9722 -1.2792 8 7 3.3952 0.6501 -2.3171 9 14 5.9930 0.7902 -1.3645 10 1 6.3887 -0.5215 -0.7919 11 1 6.4331 0.8652 -2.7808 12 1 6.6336 1.8825 -0.5887 13 8 1.6595 2.0903 1.2424 14 6 0.4713 2.7270 1.2618 15 8 -0.2275 2.7396 0.2675 16 6 0.0207 3.4062 2.4862 17 6 -1.1608 4.0893 2.6464 18 7 -1.3203 4.6002 3.8329 19 6 -0.3671 4.4075 4.7029 20 6 -0.3797 4.9098 6.0843 21 6 -1.5539 5.7117 6.5838 22 8 0.5548 4.6790 6.8219 23 16 0.8950 3.4832 4.0141 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 3.8133 0.3183 -3.1270 30 1 -1.8917 4.1932 1.8581 31 1 -2.2959 5.0395 7.0147 32 1 -1.2159 6.4155 7.3444 33 1 -1.9990 6.2599 5.7536 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842342671.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:37 Heat of formation + Delta-G solvation = -82.788360 kcal Electronic energy + Delta-G solvation = -19431.007215 eV Core-core repulsion = 16163.118052 eV Total energy + Delta-G solvation = -3267.889162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37251 -39.69713 -38.90361 -35.94694 -33.59564 -31.83113 -31.47525 -29.79612 -27.55362 -26.75526 -23.65811 -22.66946 -21.74195 -20.08021 -19.06800 -18.55939 -17.06150 -16.69197 -16.25991 -15.89101 -15.44812 -15.37205 -15.18269 -14.60833 -14.09731 -14.05338 -13.18832 -12.94464 -12.62284 -12.49291 -12.32040 -11.75257 -11.62775 -11.42971 -11.33256 -11.05415 -10.84151 -10.73939 -10.36575 -10.13284 -9.95616 -9.82663 -9.68799 -9.53047 -9.28770 -8.96497 -8.54964 -6.27741 -4.33282 -0.41782 0.91138 1.45456 1.50954 2.56337 3.17971 3.20870 3.21515 3.27576 3.32932 3.48256 4.26733 4.29800 4.71919 4.94873 5.05786 5.12311 5.19578 5.49827 5.63080 5.85996 6.09371 6.15648 6.29458 6.71273 6.79518 6.83935 7.00612 7.03052 7.31329 7.47402 7.55806 7.73382 7.99637 8.37645 8.76190 9.31503 10.80960 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026322 B = 0.004218 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.513286 B = 6636.322968 C = 7330.060440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.222 3.778 4 H 0.057 0.943 5 C -0.527 4.527 6 H 0.070 0.930 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.910 3.090 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.529 3.471 15 O -0.490 6.490 16 C -0.255 4.255 17 C 0.106 3.894 18 N -0.430 5.430 19 C -0.086 4.086 20 C 0.439 3.561 21 C -0.181 4.181 22 O -0.443 6.443 23 S 0.333 5.667 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.268 0.732 30 H 0.197 0.803 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 6.433 13.101 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.075 0.925 5 C -0.565 4.565 6 H 0.088 0.912 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.736 3.264 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.370 3.630 15 O -0.381 6.381 16 C -0.380 4.380 17 C -0.057 4.057 18 N -0.149 5.149 19 C -0.354 4.354 20 C 0.312 3.688 21 C -0.239 4.239 22 O -0.315 6.315 23 S 0.592 5.408 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.214 0.786 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.729 6.128 13.646 16.838 hybrid contribution 0.100 -0.127 -1.180 1.191 sum -7.629 6.001 12.466 15.799 Atomic orbital electron populations 1.21880 0.98053 0.99379 1.00946 1.21955 0.92980 0.99171 1.02692 1.20823 0.95468 0.88653 0.78087 0.92548 1.20966 0.89259 1.43867 1.02412 0.91201 1.24886 0.99258 0.94908 0.94613 1.69961 1.35819 1.43040 1.03334 0.86319 0.83796 0.78920 0.77334 1.20163 1.20977 1.19605 1.86577 1.32707 1.62307 1.44892 1.19323 0.81669 0.76917 0.85110 1.90845 1.55307 1.58135 1.33785 1.26317 1.01576 1.10539 0.99544 1.22533 0.95450 0.93733 0.93938 1.66242 1.27411 1.19954 1.01278 1.27815 0.97865 1.07684 1.02007 1.21739 0.87764 0.76596 0.82696 1.22058 0.97065 1.01104 1.03700 1.90631 1.35850 1.49380 1.55633 1.84434 1.16899 1.39795 0.99681 0.94498 0.92497 0.94888 0.93525 0.88654 0.92246 0.78588 0.87936 0.89012 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.57 37.16 0.32 -2.71 16 2 C -0.13 -3.07 5.53 -26.73 -0.15 -3.21 16 3 C 0.22 5.66 2.12 -27.88 -0.06 5.60 16 4 H 0.06 1.60 7.13 -51.93 -0.37 1.23 16 5 C -0.53 -14.30 8.83 -34.44 -0.30 -14.60 16 6 H 0.07 1.87 7.82 -52.48 -0.41 1.46 16 7 C 0.07 1.78 5.20 -17.82 -0.09 1.69 16 8 N -0.88 -24.47 12.01 55.43 0.67 -23.81 16 9 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 13 O -0.35 -7.93 9.71 -40.81 -0.40 -8.33 16 14 C 0.53 10.68 6.41 34.32 0.22 10.90 16 15 O -0.49 -10.75 14.07 -19.29 -0.27 -11.02 16 16 C -0.26 -4.08 6.57 -36.29 -0.24 -4.32 16 17 C 0.11 1.44 11.18 -18.56 -0.21 1.23 16 18 N -0.43 -5.42 10.02 -12.19 -0.12 -5.54 16 19 C -0.09 -1.06 7.15 -14.58 -0.10 -1.17 16 20 C 0.44 4.75 7.25 -30.76 -0.22 4.53 16 21 C -0.18 -1.26 10.12 36.01 0.36 -0.89 16 22 O -0.44 -5.84 17.60 5.57 0.10 -5.74 16 23 S 0.33 4.61 22.78 -107.50 -2.45 2.17 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.24 7.80 -51.92 -0.41 0.83 16 26 H 0.03 0.66 6.05 -51.93 -0.31 0.34 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.10 2.43 6.65 -51.93 -0.35 2.08 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 30 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.65 7.84 -51.93 -0.41 0.24 16 LS Contribution 308.21 15.07 4.64 4.64 Total: -1.00 -29.68 308.21 -6.83 -36.51 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -3.50 Total: -1.48 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.47 Total: -2.95 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.54 Total: -29.35 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.57 Total: -25.09 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -2.45 Total: 2.17 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.68 -6.83 -36.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342671.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.276 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds