Wall clock time and date at job start Tue Mar 31 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34806 * 117.00115 * 89.99656 * 13 3 2 15 15 O 1.21527 * 120.00028 * 359.97438 * 14 13 3 16 16 C 1.47100 * 119.99646 * 180.02562 * 14 13 3 17 17 C 1.37408 * 126.15225 * 180.02562 * 16 14 13 18 18 N 1.30169 * 114.00082 * 179.97438 * 17 16 14 19 19 C 1.30500 * 117.40367 * 359.97438 * 18 17 16 20 20 C 1.46984 * 124.74206 * 180.02562 * 19 18 17 21 21 C 1.50706 * 119.99931 * 359.97438 * 20 19 18 22 22 O 1.21270 * 120.00174 * 179.97438 * 20 19 18 23 23 S 1.70928 * 110.51934 * 359.74758 * 19 18 17 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 30 30 H 1.08001 * 123.00580 * 359.97438 * 17 16 14 31 31 H 1.08996 * 109.47324 * 59.99422 * 21 20 19 32 32 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 33 33 H 1.09005 * 109.46347 * 299.99289 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 8 1.6558 2.0917 -1.2407 14 6 0.4675 2.7282 -1.2559 15 8 -0.2284 2.7397 -0.2597 16 6 0.0129 3.4078 -2.4787 17 6 -1.1687 4.0916 -2.6345 18 7 -1.3319 4.6036 -3.8201 19 6 -0.3810 4.4119 -4.6931 20 6 -0.3972 4.9163 -6.0736 21 6 -1.5730 5.7183 -6.5690 22 8 0.5356 4.6872 -6.8139 23 16 0.8894 3.4988 -4.0046 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 5.8770 0.4826 2.1132 30 1 -1.8971 4.1952 -1.8438 31 1 -1.6838 6.6152 -5.9596 32 1 -1.4064 6.0036 -7.6078 33 1 -2.4790 5.1165 -6.4979 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842342672.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:41 Heat of formation + Delta-G solvation = -71.985475 kcal Electronic energy + Delta-G solvation = -19517.499076 eV Core-core repulsion = 16250.078362 eV Total energy + Delta-G solvation = -3267.420714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46285 -39.86661 -38.99853 -36.20459 -33.75533 -32.07846 -31.73392 -29.88362 -28.00056 -26.92340 -23.56023 -22.65511 -21.89781 -20.43675 -19.23137 -18.65036 -17.26288 -16.84897 -16.36526 -16.07596 -15.75483 -15.50929 -15.22471 -14.74356 -14.17002 -14.04930 -13.57065 -13.01835 -12.68658 -12.61056 -12.48924 -12.10381 -11.96874 -11.72351 -11.61981 -11.33863 -10.90668 -10.82324 -10.35289 -10.11938 -9.98612 -9.77533 -9.75919 -9.64435 -9.35811 -9.20508 -8.74570 -6.30942 -4.34647 -0.48725 0.84637 1.38830 1.45278 2.48493 3.04031 3.06661 3.12258 3.25309 3.26461 3.39586 4.18516 4.23763 4.66698 4.85609 4.97774 5.12367 5.12699 5.23755 5.58836 5.70664 5.78513 5.81010 5.86875 6.28375 6.46866 6.53117 6.60877 6.78865 6.88075 7.17296 7.25284 7.36718 8.00417 8.37456 8.74880 9.24706 10.80807 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032627 B = 0.004251 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.974705 B = 6585.087546 C = 7091.316766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.200 3.800 4 H 0.050 0.950 5 C -0.529 4.529 6 H 0.088 0.912 7 C 0.082 3.918 8 N -0.884 5.884 9 Si 0.876 3.124 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.260 1.260 13 O -0.334 6.334 14 C 0.531 3.469 15 O -0.493 6.493 16 C -0.262 4.262 17 C 0.110 3.890 18 N -0.431 5.431 19 C -0.083 4.083 20 C 0.437 3.563 21 C -0.178 4.178 22 O -0.440 6.440 23 S 0.341 5.659 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.271 0.729 30 H 0.197 0.803 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.923 6.087 -11.483 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.146 3.854 4 H 0.068 0.932 5 C -0.567 4.567 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.521 5.521 9 Si 0.704 3.296 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.184 1.184 13 O -0.250 6.250 14 C 0.372 3.628 15 O -0.383 6.383 16 C -0.386 4.386 17 C -0.053 4.053 18 N -0.150 5.150 19 C -0.351 4.351 20 C 0.310 3.690 21 C -0.236 4.236 22 O -0.312 6.312 23 S 0.600 5.400 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.214 0.786 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.804 5.819 -12.121 18.567 hybrid contribution -1.187 -0.477 1.804 2.212 sum -13.991 5.342 -10.317 18.186 Atomic orbital electron populations 1.21913 0.96914 1.00271 1.01733 1.22390 0.94419 0.99393 1.02522 1.21107 0.96608 0.88132 0.79532 0.93196 1.20752 0.87415 1.40404 1.08131 0.89362 1.24716 0.94965 0.95159 0.97319 1.69825 1.08494 1.43947 1.29805 0.87011 0.81009 0.80188 0.81342 1.19809 1.21534 1.18443 1.86596 1.32877 1.62237 1.43252 1.19371 0.81353 0.76745 0.85304 1.90838 1.55508 1.58292 1.33679 1.26204 1.01737 1.11089 0.99605 1.22531 0.95350 0.93372 0.94041 1.66268 1.27657 1.19872 1.01168 1.27860 0.97735 1.07550 1.01979 1.21743 0.87856 0.76695 0.82665 1.22056 0.97123 1.01416 1.03025 1.90641 1.36026 1.49109 1.55442 1.84529 1.15981 1.39921 0.99565 0.92381 0.93689 0.93737 0.91487 0.91039 0.91913 0.78590 0.88107 0.89304 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.56 37.16 0.32 -2.52 16 2 C -0.15 -3.26 5.15 -26.73 -0.14 -3.39 16 3 C 0.20 4.81 1.84 -27.88 -0.05 4.76 16 4 H 0.05 1.26 6.22 -51.93 -0.32 0.94 16 5 C -0.53 -14.68 9.48 -34.44 -0.33 -15.01 16 6 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 7 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 8 N -0.88 -25.99 13.96 55.43 0.77 -25.22 16 9 Si 0.88 20.92 24.41 -169.99 -4.15 16.77 16 10 H -0.27 -6.22 6.83 56.52 0.39 -5.83 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.26 -6.05 6.53 56.52 0.37 -5.69 16 13 O -0.33 -7.28 9.71 -40.78 -0.40 -7.67 16 14 C 0.53 10.10 6.40 34.33 0.22 10.32 16 15 O -0.49 -10.02 14.07 -19.28 -0.27 -10.29 16 16 C -0.26 -3.97 6.57 -36.29 -0.24 -4.21 16 17 C 0.11 1.41 11.18 -18.56 -0.21 1.20 16 18 N -0.43 -5.17 10.24 -12.19 -0.12 -5.29 16 19 C -0.08 -0.99 7.16 -14.58 -0.10 -1.09 16 20 C 0.44 4.57 7.25 -30.76 -0.22 4.35 16 21 C -0.18 -1.17 10.03 36.01 0.36 -0.81 16 22 O -0.44 -5.70 17.58 5.57 0.10 -5.60 16 23 S 0.34 4.57 22.78 -107.50 -2.45 2.12 16 24 H 0.06 1.12 7.79 -51.93 -0.40 0.72 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.81 6.06 -51.93 -0.31 0.49 16 27 H 0.07 1.51 3.22 -51.93 -0.17 1.34 16 28 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.20 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 300.66 15.07 4.53 4.53 Total: -1.00 -30.76 300.66 -5.83 -36.59 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -3.35 Total: -1.72 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.49 Total: -4.21 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.65 Total: -30.51 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.57 Total: -23.57 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.15 Total: 16.77 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -2.45 Total: 2.12 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.76 -5.83 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342672.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.397 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds