Wall clock time and date at job start Tue Mar 31 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48499 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47340 * 300.00162 * 3 2 1 6 6 H 1.48496 * 109.47256 * 60.00155 * 3 2 1 7 7 C 1.38796 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00055 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00144 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00179 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47271 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99701 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99785 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99498 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.46921 * 179.97438 * 14 13 11 16 16 C 1.35449 * 126.77663 * 89.98074 * 15 14 13 17 17 C 1.41387 * 103.98917 * 180.02562 * 16 15 14 18 18 C 1.50694 * 126.80435 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.49958 * 343.74850 * 18 17 16 20 20 C 1.52995 * 117.50195 * 275.08673 * 18 17 16 21 21 N 1.30173 * 106.39214 * 0.02562 * 17 16 15 22 22 O 1.20923 * 111.60616 * 359.97438 * 21 17 16 23 23 H 0.97005 * 120.00210 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46903 * 59.99894 * 10 9 7 25 25 H 1.08994 * 109.47326 * 300.00070 * 10 9 7 26 26 H 1.08998 * 109.47223 * 59.99949 * 14 13 11 27 27 H 1.08996 * 109.46859 * 299.99747 * 14 13 11 28 28 H 1.08004 * 128.00729 * 0.07331 * 16 15 14 29 29 H 1.09005 * 115.55017 * 129.41236 * 18 17 16 30 30 H 1.08998 * 117.49821 * 359.97438 * 19 18 17 31 31 H 1.09000 * 117.50048 * 145.02131 * 19 18 17 32 32 H 1.08998 * 117.50084 * 214.97900 * 20 18 17 33 33 H 1.09006 * 117.49384 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7955 -5.5015 0.0010 13 8 2.8406 -6.3389 0.0007 14 6 2.2609 -7.6702 0.0007 15 6 3.3630 -8.6979 0.0008 16 6 3.9563 -9.2507 1.0858 17 6 4.9099 -10.1394 0.5383 18 6 5.8611 -11.0250 1.3011 19 6 6.0836 -10.7123 2.7822 20 6 7.1838 -10.4095 1.7619 21 7 4.8042 -10.0403 -0.7553 22 8 3.9505 -9.2449 -1.0727 23 1 -0.4851 0.8401 0.0004 24 1 3.1244 -3.7313 0.8895 25 1 3.1244 -3.7314 -0.8905 26 1 1.6452 -7.7984 -0.8895 27 1 1.6444 -7.7979 0.8905 28 1 3.7484 -9.0579 2.1280 29 1 5.8710 -12.0728 1.0010 30 1 5.5423 -9.8658 3.2047 31 1 6.2404 -11.5543 3.4564 32 1 8.0640 -11.0525 1.7653 33 1 7.3662 -9.3641 1.5129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849681440.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:06 Heat of formation + Delta-G solvation = 2.239727 kcal Electronic energy + Delta-G solvation = -18487.800481 eV Core-core repulsion = 15223.598413 eV Total energy + Delta-G solvation = -3264.202068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.21814 -40.18690 -37.94482 -36.46661 -33.70260 -32.79342 -32.52005 -29.92914 -27.17468 -25.57285 -24.97214 -23.17460 -22.38819 -21.27447 -20.15595 -18.15459 -17.87009 -17.64557 -17.10634 -16.47868 -16.30504 -15.56684 -14.89773 -14.87692 -14.32044 -14.18075 -14.05415 -13.28639 -12.73664 -12.59161 -12.39729 -12.19436 -11.97761 -11.86676 -11.47144 -11.11958 -11.11857 -10.89641 -10.85216 -10.66208 -10.30966 -10.06778 -9.94190 -9.70833 -9.15625 -8.41045 -6.64941 -6.30974 -4.04059 0.97025 1.81837 2.47195 2.51457 2.89348 3.17826 3.23651 3.25241 3.28349 3.49943 3.70801 4.10788 4.13945 4.38901 4.51522 4.65577 4.69807 4.90072 4.90732 5.05276 5.06914 5.18850 5.21534 5.35066 5.41579 5.47717 5.61220 5.66855 5.69487 5.71110 6.02080 6.45338 7.52615 7.96164 7.99489 8.27218 9.14911 10.76560 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030952 B = 0.002789 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.422289 B =10035.448300 C =10526.074712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.077 0.923 9 S -0.057 6.057 10 C -0.128 4.128 11 C 0.484 3.516 12 O -0.483 6.483 13 O -0.357 6.357 14 C 0.147 3.853 15 C -0.029 4.029 16 C -0.199 4.199 17 C 0.044 3.956 18 C -0.088 4.088 19 C -0.162 4.162 20 C -0.163 4.163 21 N -0.352 5.352 22 O 0.112 5.888 23 H 0.269 0.731 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.176 0.824 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.468 -20.016 4.261 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.095 0.905 9 S 0.169 5.831 10 C -0.276 4.276 11 C 0.325 3.675 12 O -0.368 6.368 13 O -0.275 6.275 14 C 0.072 3.928 15 C -0.093 4.093 16 C -0.221 4.221 17 C -0.114 4.114 18 C -0.107 4.107 19 C -0.200 4.200 20 C -0.201 4.201 21 N -0.053 5.053 22 O 0.043 5.957 23 H 0.079 0.921 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.193 0.807 29 H 0.141 0.859 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.436 -20.787 3.220 23.055 hybrid contribution 1.529 1.389 0.715 2.186 sum 10.965 -19.398 3.935 22.627 Atomic orbital electron populations 1.70016 1.05989 1.27595 1.46599 1.25008 0.95077 0.99154 0.94289 0.86059 0.79617 0.81539 0.77964 1.19485 1.20484 1.20492 1.22877 0.95073 0.91066 1.59390 0.90481 1.85423 1.04125 0.96611 1.96903 1.23330 1.07183 0.90403 1.06706 1.23376 0.85112 0.86760 0.72258 1.90690 1.16735 1.85399 1.43967 1.86586 1.41433 1.14278 1.85195 1.21002 0.89391 0.76891 1.05556 1.23899 0.99615 0.99393 0.86380 1.22452 0.98445 1.00034 1.01141 1.22648 0.99229 0.99784 0.89739 1.20102 0.96712 0.97898 0.95999 1.23061 1.02340 1.03995 0.90588 1.23053 0.92009 1.02429 1.02575 1.73842 1.06377 1.08965 1.16146 1.84872 1.36832 1.41101 1.32931 0.92077 0.87738 0.87682 0.88474 0.87402 0.80698 0.85877 0.88059 0.87697 0.87824 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.36 13.22 55.49 0.73 -24.63 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.75 9.50 30.94 0.29 -14.45 16 8 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.06 -1.47 20.58 -107.50 -2.21 -3.69 16 10 C -0.13 -2.51 6.27 36.01 0.23 -2.28 16 11 C 0.48 8.67 7.98 36.01 0.29 8.95 16 12 O -0.48 -9.83 15.61 -18.75 -0.29 -10.12 16 13 O -0.36 -5.30 10.20 -39.25 -0.40 -5.70 16 14 C 0.15 1.70 6.03 36.00 0.22 1.92 16 15 C -0.03 -0.34 7.13 -35.31 -0.25 -0.59 16 16 C -0.20 -2.01 10.40 -39.38 -0.41 -2.42 16 17 C 0.04 0.48 6.95 -82.10 -0.57 -0.09 16 18 C -0.09 -0.72 6.33 -91.78 -0.58 -1.30 16 19 C -0.16 -0.99 10.05 -26.69 -0.27 -1.26 16 20 C -0.16 -1.14 10.24 -26.70 -0.27 -1.41 16 21 N -0.35 -4.60 12.07 33.42 0.40 -4.20 16 22 O 0.11 1.45 11.20 17.17 0.19 1.65 16 23 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.10 1.88 8.14 -51.91 -0.42 1.45 16 25 H 0.11 1.91 8.14 -51.92 -0.42 1.49 16 26 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 27 H 0.11 1.07 8.13 -51.93 -0.42 0.65 16 28 H 0.18 1.32 7.63 -52.48 -0.40 0.92 16 29 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 0.60 7.34 -51.93 -0.38 0.22 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -32.31 316.31 -6.97 -39.28 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -3.71 Total: -2.24 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -1.43 Total: -10.97 kcal Atomic # 7 Polarization: -29.96 SS G_CDS: 1.14 Total: -28.82 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.50 Total: -14.17 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.31 -6.97 -39.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849681440.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.518 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds