Wall clock time and date at job start Tue Mar 31 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48499 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47340 * 300.00162 * 3 2 1 6 6 H 1.48496 * 109.47256 * 60.00155 * 3 2 1 7 7 C 1.38796 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00055 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00144 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00179 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47271 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99701 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99785 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99498 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.46921 * 179.97438 * 14 13 11 16 16 C 1.35449 * 126.77663 * 89.98074 * 15 14 13 17 17 C 1.41387 * 103.98917 * 180.02562 * 16 15 14 18 18 C 1.50694 * 126.80435 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.49958 * 343.74850 * 18 17 16 20 20 C 1.52995 * 117.50195 * 275.08673 * 18 17 16 21 21 N 1.30173 * 106.39214 * 0.02562 * 17 16 15 22 22 O 1.20923 * 111.60616 * 359.97438 * 21 17 16 23 23 H 0.97005 * 120.00210 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46903 * 59.99894 * 10 9 7 25 25 H 1.08994 * 109.47326 * 300.00070 * 10 9 7 26 26 H 1.08998 * 109.47223 * 59.99949 * 14 13 11 27 27 H 1.08996 * 109.46859 * 299.99747 * 14 13 11 28 28 H 1.08004 * 128.00729 * 0.07331 * 16 15 14 29 29 H 1.09005 * 115.55017 * 129.41236 * 18 17 16 30 30 H 1.08998 * 117.49821 * 359.97438 * 19 18 17 31 31 H 1.09000 * 117.50048 * 145.02131 * 19 18 17 32 32 H 1.08998 * 117.50084 * 214.97900 * 20 18 17 33 33 H 1.09006 * 117.49384 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7955 -5.5015 0.0010 13 8 2.8406 -6.3389 0.0007 14 6 2.2609 -7.6702 0.0007 15 6 3.3630 -8.6979 0.0008 16 6 3.9563 -9.2507 1.0858 17 6 4.9099 -10.1394 0.5383 18 6 5.8611 -11.0250 1.3011 19 6 6.0836 -10.7123 2.7822 20 6 7.1838 -10.4095 1.7619 21 7 4.8042 -10.0403 -0.7553 22 8 3.9505 -9.2449 -1.0727 23 1 -0.4851 0.8401 0.0004 24 1 3.1244 -3.7313 0.8895 25 1 3.1244 -3.7314 -0.8905 26 1 1.6452 -7.7984 -0.8895 27 1 1.6444 -7.7979 0.8905 28 1 3.7484 -9.0579 2.1280 29 1 5.8710 -12.0728 1.0010 30 1 5.5423 -9.8658 3.2047 31 1 6.2404 -11.5543 3.4564 32 1 8.0640 -11.0525 1.7653 33 1 7.3662 -9.3641 1.5129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849681440.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:05 Heat of formation + Delta-G solvation = -16.156789 kcal Electronic energy + Delta-G solvation = -18488.598214 eV Core-core repulsion = 15223.598413 eV Total energy + Delta-G solvation = -3264.999801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.09936 -41.55040 -38.53163 -37.79953 -34.60276 -34.54005 -33.72994 -31.41794 -28.25034 -27.63258 -25.70737 -23.87437 -23.00641 -22.63157 -20.94211 -19.93655 -19.00095 -18.65217 -18.39152 -17.75648 -17.21647 -16.88800 -16.59006 -16.00378 -15.55183 -15.27813 -15.12781 -14.59853 -14.37150 -13.81676 -13.53903 -13.16589 -13.06111 -12.91655 -12.77893 -12.64173 -12.42718 -12.20319 -11.86212 -11.77461 -11.72207 -11.38035 -11.16721 -10.82491 -10.63912 -10.36826 -8.71967 -8.37037 -6.16012 0.02527 0.93620 1.08290 1.16504 1.42716 1.43002 1.56861 1.73999 2.13377 2.24392 2.66407 2.98402 3.01269 3.26086 3.35032 3.76436 3.83472 3.87093 3.90668 4.04151 4.15517 4.17445 4.20578 4.39377 4.46362 4.55009 4.74027 4.87358 4.99889 5.07831 5.11890 5.20754 5.42764 6.19269 6.61005 7.05411 7.08937 8.72277 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030952 B = 0.002789 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.422289 B =10035.448300 C =10526.074712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.016 3.984 3 Si 0.999 3.001 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.086 0.914 9 S -0.133 6.133 10 C -0.110 4.110 11 C 0.497 3.503 12 O -0.511 6.511 13 O -0.351 6.351 14 C 0.145 3.855 15 C -0.040 4.040 16 C -0.189 4.189 17 C 0.044 3.956 18 C -0.109 4.109 19 C -0.145 4.145 20 C -0.165 4.165 21 N -0.380 5.380 22 O 0.092 5.908 23 H 0.272 0.728 24 H 0.124 0.876 25 H 0.121 0.879 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.203 0.797 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.298 -20.497 5.467 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.104 0.896 9 S 0.094 5.906 10 C -0.259 4.259 11 C 0.339 3.661 12 O -0.399 6.399 13 O -0.268 6.268 14 C 0.071 3.929 15 C -0.104 4.104 16 C -0.210 4.210 17 C -0.114 4.114 18 C -0.127 4.127 19 C -0.182 4.182 20 C -0.203 4.203 21 N -0.085 5.085 22 O 0.025 5.975 23 H 0.082 0.918 24 H 0.142 0.858 25 H 0.139 0.861 26 H 0.121 0.879 27 H 0.147 0.853 28 H 0.220 0.780 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.273 -21.283 4.420 24.486 hybrid contribution 1.034 1.355 0.357 1.742 sum 12.307 -19.928 4.777 23.904 Atomic orbital electron populations 1.70160 1.07866 1.28723 1.47799 1.26089 0.95973 1.03217 0.93608 0.84901 0.78617 0.76348 0.78079 1.18120 1.20017 1.19872 1.23224 0.95517 0.91635 1.59131 0.89637 1.85497 1.08969 0.98944 1.97165 1.23114 1.04418 0.89900 1.08427 1.22886 0.84649 0.86885 0.71696 1.90689 1.17907 1.85821 1.45444 1.86527 1.40723 1.15116 1.84476 1.21274 0.89665 0.74986 1.06978 1.23944 1.00034 0.99754 0.86635 1.22841 0.97242 0.98843 1.02068 1.23189 0.99306 0.99623 0.89308 1.20282 0.97124 0.97851 0.97484 1.23197 1.00805 1.04639 0.89548 1.23122 0.92378 1.01938 1.02888 1.73841 1.07137 1.09914 1.17583 1.84839 1.37332 1.41647 1.33701 0.91848 0.85764 0.86114 0.87929 0.85317 0.77996 0.85176 0.87721 0.85580 0.86234 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.91 13.22 21.65 0.29 -53.63 16 2 C 0.02 0.90 5.49 84.86 0.47 1.36 16 3 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.55 -30.04 9.50 67.95 0.65 -29.40 16 8 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.13 -6.95 20.58 -56.49 -1.16 -8.11 16 10 C -0.11 -4.18 6.27 71.24 0.45 -3.74 16 11 C 0.50 17.28 7.98 71.24 0.57 17.84 16 12 O -0.51 -20.64 15.61 21.98 0.34 -20.30 16 13 O -0.35 -9.85 10.20 -51.40 -0.52 -10.37 16 14 C 0.15 3.16 6.03 71.23 0.43 3.59 16 15 C -0.04 -0.87 7.13 25.04 0.18 -0.70 16 16 C -0.19 -3.45 10.40 22.40 0.23 -3.21 16 17 C 0.04 0.90 6.95 43.58 0.30 1.21 16 18 C -0.11 -1.57 6.33 -11.54 -0.07 -1.64 16 19 C -0.14 -1.34 10.05 30.62 0.31 -1.03 16 20 C -0.17 -1.98 10.24 30.62 0.31 -1.67 16 21 N -0.38 -9.82 12.07 -49.55 -0.60 -10.42 16 22 O 0.09 2.35 11.20 71.61 0.80 3.16 16 23 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 24 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 25 H 0.12 4.22 8.14 -2.40 -0.02 4.20 16 26 H 0.10 2.15 8.13 -2.39 -0.02 2.13 16 27 H 0.13 2.30 8.13 -2.39 -0.02 2.28 16 28 H 0.20 2.40 7.63 -2.91 -0.02 2.37 16 29 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.10 0.91 7.34 -2.39 -0.02 0.89 16 31 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -70.40 316.31 6.12 -64.27 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.13 Total: 8.40 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 3.82 Total: -17.39 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.31 Total: -64.05 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: 0.62 Total: -27.52 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -6.95 SS G_CDS: -1.16 Total: -8.11 kcal Total: -70.40 6.12 -64.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849681440.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.117 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds