Wall clock time and date at job start Tue Mar 31 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76198 * 99.99917 * 2 1 4 4 C 1.36506 * 125.10231 * 180.02562 * 3 2 1 5 5 C 1.36652 * 114.84938 * 179.76794 * 4 3 2 6 6 C 1.37301 * 114.60819 * 0.46424 * 5 4 3 7 7 C 1.40743 * 125.21187 * 179.82530 * 6 5 4 8 8 C 1.36351 * 120.00466 * 225.07046 * 7 6 5 9 9 C 1.40779 * 119.99595 * 9.91576 * 8 7 6 10 10 O 1.21930 * 119.99791 * 5.43887 * 9 8 7 11 11 N 1.34772 * 119.99749 * 185.44194 * 9 8 7 12 12 C 1.46493 * 120.00176 * 359.97438 * 11 9 8 13 13 C 1.36834 * 119.99991 * 180.02562 * 11 9 8 14 14 H 1.08005 * 119.99746 * 314.31291 * 13 11 9 15 15 C 1.38960 * 119.99868 * 134.30610 * 13 11 9 16 16 N 1.31437 * 119.99649 * 171.05094 * 15 13 11 17 17 Si 1.86799 * 120.00325 * 351.05351 * 15 13 11 18 18 H 1.48493 * 109.47328 * 91.29789 * 17 15 13 19 19 H 1.48508 * 109.47123 * 211.29647 * 17 15 13 20 20 H 1.48504 * 109.46995 * 331.29476 * 17 15 13 21 21 S 1.75821 * 125.10870 * 0.02637 * 3 2 1 22 22 H 1.09005 * 109.46927 * 300.00298 * 1 2 3 23 23 H 1.09003 * 109.47136 * 59.99551 * 1 2 3 24 24 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 25 25 H 1.07997 * 122.57514 * 0.02562 * 4 3 2 26 26 H 1.08002 * 122.69524 * 180.26475 * 5 4 3 27 27 H 1.08004 * 119.99763 * 45.06189 * 7 6 5 28 28 H 1.07996 * 120.00451 * 189.64710 * 8 7 6 29 29 H 1.09001 * 109.47195 * 84.30122 * 12 11 9 30 30 H 1.09005 * 109.47601 * 204.29984 * 12 11 9 31 31 H 1.09002 * 109.47379 * 324.29886 * 12 11 9 32 32 H 0.97005 * 120.00270 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3521 2.3143 -0.0005 5 6 3.3460 3.6808 -0.0054 6 6 2.0952 4.2471 0.0011 7 6 1.8301 5.6293 0.0014 8 6 0.8874 6.1426 0.8422 9 6 0.3293 5.3347 1.8510 10 8 0.7583 4.2087 2.0373 11 7 -0.6793 5.8059 2.6107 12 6 -1.1943 7.1590 2.3871 13 6 -1.2214 5.0209 3.5916 14 1 -1.4639 3.9889 3.3849 15 6 -1.4599 5.5514 4.8535 16 7 -2.1382 4.8580 5.7404 17 14 -0.8166 7.2501 5.2895 18 1 -1.8495 8.2678 4.9693 19 1 -0.5024 7.3032 6.7400 20 1 0.4135 7.5297 4.5060 21 16 0.8751 2.9808 0.0007 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 4.2647 1.7369 -0.0014 26 1 4.2523 4.2682 -0.0106 27 1 2.3736 6.2835 -0.6643 28 1 0.5720 7.1701 0.7370 29 1 -1.9324 7.1389 1.5853 30 1 -1.6610 7.5258 3.3013 31 1 -0.3729 7.8191 2.1084 32 1 -2.3051 5.2284 6.6213 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858933432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:08 Heat of formation + Delta-G solvation = 51.017425 kcal Electronic energy + Delta-G solvation = -17679.024236 eV Core-core repulsion = 14859.690199 eV Total energy + Delta-G solvation = -2819.334037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.16938 -37.08982 -35.05616 -33.03262 -32.12205 -29.20759 -28.31213 -26.56645 -25.57410 -23.82215 -21.64149 -19.41427 -18.71644 -17.29884 -17.00344 -16.21004 -15.63968 -15.40333 -14.66835 -14.33687 -13.84521 -13.61424 -13.42866 -13.31519 -12.80443 -12.61182 -12.53091 -12.43567 -12.16805 -11.86997 -11.70978 -11.39110 -10.93897 -10.79560 -10.38723 -10.07519 -10.00901 -9.70529 -9.12585 -8.58595 -8.54307 -7.86872 -7.07806 -6.82782 -6.45647 -4.09918 0.69349 1.72961 1.84135 2.14387 2.61524 2.79568 2.98268 3.16486 3.18977 3.23657 4.06379 4.28595 4.56166 4.96059 5.11732 5.18690 5.33444 5.54852 5.65432 5.75970 5.78142 5.83160 5.95525 6.09991 6.19950 6.27280 6.49174 6.58542 6.83262 6.95589 7.52567 8.22967 8.46442 8.89151 9.19450 9.72593 10.64678 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.022534 B = 0.005683 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.269112 B = 4925.750509 C = 5665.759522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 S -0.065 6.065 3 C -0.247 4.247 4 C -0.124 4.124 5 C -0.120 4.120 6 C -0.163 4.163 7 C -0.034 4.034 8 C -0.193 4.193 9 C 0.470 3.530 10 O -0.548 6.548 11 N -0.458 5.458 12 C 0.057 3.943 13 C -0.303 4.303 14 H 0.105 0.895 15 C 0.056 3.944 16 N -0.865 5.865 17 Si 0.893 3.107 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.264 1.264 21 S 0.275 5.725 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.107 0.893 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.124 0.876 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 -0.150 -12.791 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 S 0.171 5.829 3 C -0.478 4.478 4 C -0.162 4.162 5 C -0.152 4.152 6 C -0.285 4.285 7 C -0.057 4.057 8 C -0.218 4.218 9 C 0.262 3.738 10 O -0.434 6.434 11 N -0.178 5.178 12 C -0.086 4.086 13 C -0.431 4.431 14 H 0.122 0.878 15 C -0.150 4.150 16 N -0.501 5.501 17 Si 0.721 3.279 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.188 1.188 21 S 0.545 5.455 22 H 0.111 0.889 23 H 0.101 0.899 24 H 0.126 0.874 25 H 0.147 0.853 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.282 -1.811 -12.468 13.307 hybrid contribution 0.902 2.334 0.713 2.602 sum 5.184 0.523 -11.755 12.858 Atomic orbital electron populations 1.23695 0.95445 1.07103 1.06525 1.84971 1.05948 0.98893 1.93100 1.26903 1.02161 1.01035 1.17740 1.19618 0.95623 0.94027 1.06921 1.20240 0.96293 0.93753 1.04929 1.22132 0.96852 0.97562 1.11973 1.20415 0.96303 0.91801 0.97190 1.22553 1.00723 1.01240 0.97251 1.17073 0.81314 0.88717 0.86656 1.90874 1.61749 1.19710 1.71019 1.43767 1.29158 1.12908 1.31949 1.22124 0.98725 0.86252 1.01536 1.19072 1.37974 0.97021 0.89039 0.87790 1.25548 0.95352 0.98783 0.95321 1.69669 1.36076 1.38238 1.06110 0.86707 0.79960 0.83297 0.77931 1.20093 1.21458 1.18806 1.83847 1.06277 0.92322 1.63064 0.88927 0.89853 0.87400 0.85270 0.84959 0.85158 0.85813 0.92874 0.91708 0.92437 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.47 101.05 0.96 -1.07 16 2 S -0.07 -0.97 22.88 -107.50 -2.46 -3.43 16 3 C -0.25 -4.31 6.71 30.11 0.20 -4.11 16 4 C -0.12 -2.08 10.15 -40.78 -0.41 -2.50 16 5 C -0.12 -1.99 10.12 -40.50 -0.41 -2.40 16 6 C -0.16 -2.93 4.59 -38.98 -0.18 -3.11 16 7 C -0.03 -0.55 9.86 -39.32 -0.39 -0.94 16 8 C -0.19 -3.46 9.11 -39.30 -0.36 -3.82 16 9 C 0.47 10.82 6.95 -15.30 -0.11 10.72 16 10 O -0.55 -14.14 11.44 4.98 0.06 -14.09 16 11 N -0.46 -10.96 2.50 -125.73 -0.31 -11.27 16 12 C 0.06 1.09 8.39 59.84 0.50 1.59 16 13 C -0.30 -8.46 9.30 -15.05 -0.14 -8.60 16 14 H 0.10 3.24 8.05 -52.48 -0.42 2.82 16 15 C 0.06 1.55 5.43 -17.45 -0.09 1.46 16 16 N -0.87 -24.93 13.96 55.50 0.77 -24.15 16 17 Si 0.89 20.61 24.73 -169.99 -4.20 16.41 16 18 H -0.27 -5.82 6.72 56.52 0.38 -5.44 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.26 -6.03 7.01 56.52 0.40 -5.63 16 21 S 0.28 5.08 17.95 -107.50 -1.93 3.15 16 22 H 0.09 1.36 8.00 -51.91 -0.42 0.94 16 23 H 0.08 0.99 8.00 -51.91 -0.42 0.57 16 24 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 25 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 26 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 28 H 0.12 1.81 6.14 -52.49 -0.32 1.49 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.31 3.61 -51.93 -0.19 1.12 16 31 H 0.06 0.93 6.34 -51.93 -0.33 0.60 16 32 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 293.27 15.07 4.42 4.42 Total: -1.00 -31.98 293.27 -7.45 -39.43 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.37 Total: 2.30 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.43 Total: -12.77 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.46 Total: -35.43 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.06 Total: -14.09 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.20 Total: 16.41 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -4.39 Total: -0.28 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.98 -7.45 -39.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858933432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.452 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds