Wall clock time and date at job start Tue Mar 31 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76198 * 99.99917 * 2 1 4 4 C 1.36506 * 125.10231 * 180.02562 * 3 2 1 5 5 C 1.36652 * 114.84938 * 179.76794 * 4 3 2 6 6 C 1.37301 * 114.60819 * 0.46424 * 5 4 3 7 7 C 1.40743 * 125.21187 * 179.82530 * 6 5 4 8 8 C 1.36351 * 120.00466 * 225.07046 * 7 6 5 9 9 C 1.40779 * 119.99595 * 9.91576 * 8 7 6 10 10 O 1.21930 * 119.99791 * 5.43887 * 9 8 7 11 11 N 1.34772 * 119.99749 * 185.44194 * 9 8 7 12 12 C 1.46493 * 120.00176 * 359.97438 * 11 9 8 13 13 C 1.36834 * 119.99991 * 180.02562 * 11 9 8 14 14 H 1.08005 * 119.99746 * 314.31291 * 13 11 9 15 15 C 1.38960 * 119.99868 * 134.30610 * 13 11 9 16 16 N 1.31437 * 119.99649 * 171.05094 * 15 13 11 17 17 Si 1.86799 * 120.00325 * 351.05351 * 15 13 11 18 18 H 1.48493 * 109.47328 * 91.29789 * 17 15 13 19 19 H 1.48508 * 109.47123 * 211.29647 * 17 15 13 20 20 H 1.48504 * 109.46995 * 331.29476 * 17 15 13 21 21 S 1.75821 * 125.10870 * 0.02637 * 3 2 1 22 22 H 1.09005 * 109.46927 * 300.00298 * 1 2 3 23 23 H 1.09003 * 109.47136 * 59.99551 * 1 2 3 24 24 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 25 25 H 1.07997 * 122.57514 * 0.02562 * 4 3 2 26 26 H 1.08002 * 122.69524 * 180.26475 * 5 4 3 27 27 H 1.08004 * 119.99763 * 45.06189 * 7 6 5 28 28 H 1.07996 * 120.00451 * 189.64710 * 8 7 6 29 29 H 1.09001 * 109.47195 * 84.30122 * 12 11 9 30 30 H 1.09005 * 109.47601 * 204.29984 * 12 11 9 31 31 H 1.09002 * 109.47379 * 324.29886 * 12 11 9 32 32 H 0.97005 * 120.00270 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3521 2.3143 -0.0005 5 6 3.3460 3.6808 -0.0054 6 6 2.0952 4.2471 0.0011 7 6 1.8301 5.6293 0.0014 8 6 0.8874 6.1426 0.8422 9 6 0.3293 5.3347 1.8510 10 8 0.7583 4.2087 2.0373 11 7 -0.6793 5.8059 2.6107 12 6 -1.1943 7.1590 2.3871 13 6 -1.2214 5.0209 3.5916 14 1 -1.4639 3.9889 3.3849 15 6 -1.4599 5.5514 4.8535 16 7 -2.1382 4.8580 5.7404 17 14 -0.8166 7.2501 5.2895 18 1 -1.8495 8.2678 4.9693 19 1 -0.5024 7.3032 6.7400 20 1 0.4135 7.5297 4.5060 21 16 0.8751 2.9808 0.0007 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 4.2647 1.7369 -0.0014 26 1 4.2523 4.2682 -0.0106 27 1 2.3736 6.2835 -0.6643 28 1 0.5720 7.1701 0.7370 29 1 -1.9324 7.1389 1.5853 30 1 -1.6610 7.5258 3.3013 31 1 -0.3729 7.8191 2.1084 32 1 -2.3051 5.2284 6.6213 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858933432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:08 Heat of formation + Delta-G solvation = 30.540049 kcal Electronic energy + Delta-G solvation = -17679.912202 eV Core-core repulsion = 14859.690199 eV Total energy + Delta-G solvation = -2820.222003 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85142 -38.45733 -36.80195 -34.52731 -34.07060 -30.38523 -29.68472 -28.19379 -27.21511 -25.32299 -23.17685 -20.71434 -20.28736 -19.15142 -18.56193 -17.88501 -17.07835 -16.88264 -16.05337 -16.00898 -15.26236 -15.08124 -14.78381 -14.52247 -14.45522 -14.22926 -14.11639 -13.78259 -13.63360 -13.40502 -12.95983 -12.81779 -12.72037 -12.19679 -12.11345 -11.84413 -11.32174 -11.13394 -11.00054 -10.26536 -9.92529 -9.57042 -8.63524 -8.48742 -8.12308 -6.22268 -0.65812 0.50606 0.52220 0.79848 1.18927 1.27468 1.34689 1.42707 1.52231 1.89663 2.17159 2.59670 2.92257 3.03249 4.06610 4.07117 4.13363 4.18822 4.33448 4.43739 4.56571 4.58705 4.70837 4.76573 4.80931 4.96931 5.15541 5.30295 5.46592 5.58575 5.70882 6.03826 6.62961 6.95488 7.28245 7.91733 8.66474 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.022534 B = 0.005683 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.269112 B = 4925.750509 C = 5665.759522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.058 6.058 3 C -0.254 4.254 4 C -0.136 4.136 5 C -0.110 4.110 6 C -0.189 4.189 7 C 0.003 3.997 8 C -0.221 4.221 9 C 0.469 3.531 10 O -0.587 6.587 11 N -0.481 5.481 12 C 0.053 3.947 13 C -0.318 4.318 14 H 0.042 0.958 15 C 0.002 3.998 16 N -0.922 5.922 17 Si 0.964 3.036 18 H -0.239 1.239 19 H -0.295 1.295 20 H -0.255 1.255 21 S 0.218 5.782 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.138 0.862 25 H 0.151 0.849 26 H 0.167 0.833 27 H 0.186 0.814 28 H 0.165 0.835 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.347 2.338 -14.849 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.178 5.822 3 C -0.485 4.485 4 C -0.173 4.173 5 C -0.142 4.142 6 C -0.311 4.311 7 C -0.019 4.019 8 C -0.245 4.245 9 C 0.264 3.736 10 O -0.474 6.474 11 N -0.203 5.203 12 C -0.089 4.089 13 C -0.447 4.447 14 H 0.059 0.941 15 C -0.199 4.199 16 N -0.560 5.560 17 Si 0.787 3.213 18 H -0.163 1.163 19 H -0.223 1.223 20 H -0.178 1.178 21 S 0.488 5.512 22 H 0.086 0.914 23 H 0.111 0.889 24 H 0.157 0.843 25 H 0.169 0.831 26 H 0.184 0.816 27 H 0.203 0.797 28 H 0.182 0.818 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.484 0.682 -14.570 15.962 hybrid contribution 0.386 1.273 1.112 1.734 sum 6.870 1.955 -13.458 15.236 Atomic orbital electron populations 1.23762 0.94033 1.08868 1.05764 1.84865 1.07518 0.97157 1.92648 1.27243 1.02035 1.02079 1.17165 1.20047 0.96110 0.94722 1.06447 1.20671 0.96975 0.93958 1.02621 1.22530 0.96817 0.98406 1.13327 1.21054 0.93899 0.91292 0.95659 1.22545 1.02109 1.02494 0.97377 1.17965 0.80610 0.88405 0.86665 1.90872 1.62788 1.21677 1.72051 1.43820 1.30284 1.14455 1.31707 1.22313 1.00676 0.84029 1.01882 1.18605 1.39536 0.95503 0.91091 0.94054 1.26403 0.95193 1.03662 0.94603 1.69817 1.38545 1.40880 1.06794 0.85613 0.80269 0.78452 0.76927 1.16342 1.22270 1.17843 1.84061 1.08251 0.94439 1.64492 0.91356 0.88927 0.84343 0.83096 0.81570 0.79712 0.81798 0.90681 0.92750 0.88510 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.47 113.37 1.07 -2.92 16 2 S -0.06 -1.71 22.88 -56.49 -1.29 -3.01 16 3 C -0.25 -8.74 6.71 67.41 0.45 -8.29 16 4 C -0.14 -4.27 10.15 21.49 0.22 -4.05 16 5 C -0.11 -3.31 10.12 21.68 0.22 -3.09 16 6 C -0.19 -6.33 4.59 22.66 0.10 -6.23 16 7 C 0.00 0.08 9.86 22.44 0.22 0.30 16 8 C -0.22 -7.17 9.11 22.45 0.20 -6.96 16 9 C 0.47 21.44 6.95 84.86 0.59 22.03 16 10 O -0.59 -31.06 11.44 -5.09 -0.06 -31.12 16 11 N -0.48 -23.09 2.50 -669.83 -1.67 -24.76 16 12 C 0.05 1.88 8.39 127.77 1.07 2.96 16 13 C -0.32 -18.78 9.30 84.09 0.78 -18.00 16 14 H 0.04 2.85 8.05 -2.91 -0.02 2.83 16 15 C 0.00 0.13 5.43 84.92 0.46 0.59 16 16 N -0.92 -56.17 13.96 21.67 0.30 -55.86 16 17 Si 0.96 42.49 24.73 68.60 1.70 44.19 16 18 H -0.24 -9.10 6.72 99.48 0.67 -8.43 16 19 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.25 -10.72 7.01 99.48 0.70 -10.02 16 21 S 0.22 8.12 17.95 -56.49 -1.01 7.11 16 22 H 0.07 2.12 8.00 -2.39 -0.02 2.11 16 23 H 0.09 2.21 8.00 -2.39 -0.02 2.19 16 24 H 0.14 2.65 8.14 -2.40 -0.02 2.63 16 25 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 26 H 0.17 3.79 8.06 -2.91 -0.02 3.76 16 27 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.16 3.90 6.14 -2.91 -0.02 3.88 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 2.04 3.61 -2.38 -0.01 2.04 16 31 H 0.10 2.65 6.34 -2.39 -0.02 2.63 16 32 H 0.28 15.59 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -76.23 293.27 4.45 -71.78 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 1.09 Total: 15.35 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 5.40 Total: -23.68 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.37 Total: -80.63 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.06 Total: -31.12 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.70 Total: 44.19 kcal Atomic # 16 Polarization: 6.41 SS G_CDS: -2.31 Total: 4.10 kcal Total: -76.23 4.45 -71.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858933432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.321 kcal (2) G-P(sol) polarization free energy of solvation -76.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds