Wall clock time and date at job start Tue Mar 31 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47092 * 2 1 4 4 C 1.53003 * 109.47424 * 240.00530 * 2 1 3 5 5 N 1.46500 * 109.47270 * 64.99270 * 4 2 1 6 6 C 1.34778 * 119.99933 * 179.97438 * 5 4 2 7 7 O 1.21758 * 120.00036 * 0.02562 * 6 5 4 8 8 C 1.46237 * 119.99579 * 180.02562 * 6 5 4 9 9 S 1.75662 * 125.23199 * 0.15483 * 8 6 5 10 10 C 1.75475 * 92.09238 * 180.20599 * 9 8 6 11 11 C 1.32767 * 111.35954 * 359.80427 * 10 9 8 12 12 C 1.39545 * 125.22197 * 180.02562 * 8 6 5 13 13 C 1.40538 * 123.71888 * 0.02562 * 12 8 6 14 14 H 1.07998 * 120.00023 * 24.64760 * 13 12 8 15 15 C 1.40312 * 119.99900 * 204.65136 * 13 12 8 16 16 N 1.30642 * 119.99382 * 196.35229 * 15 13 12 17 17 Si 1.86794 * 120.00251 * 16.35093 * 15 13 12 18 18 H 1.48501 * 109.47116 * 263.40403 * 17 15 13 19 19 H 1.48496 * 109.47146 * 23.40621 * 17 15 13 20 20 H 1.48503 * 109.46955 * 143.40794 * 17 15 13 21 21 C 1.50701 * 109.47174 * 119.99933 * 2 1 3 22 22 O 1.20825 * 119.99514 * 120.00583 * 21 2 1 23 23 O 1.34222 * 120.00184 * 299.99920 * 21 2 1 24 24 H 1.09004 * 109.46657 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47349 * 299.99486 * 1 2 3 26 26 H 1.08997 * 109.47074 * 60.00028 * 1 2 3 27 27 H 1.09002 * 109.46562 * 304.99560 * 4 2 1 28 28 H 1.08998 * 109.47328 * 185.00082 * 4 2 1 29 29 H 0.97004 * 119.99635 * 0.02562 * 5 4 2 30 30 H 1.07999 * 124.31869 * 179.82906 * 10 9 8 31 31 H 1.08005 * 122.77910 * 180.02562 * 11 10 9 32 32 H 0.97006 * 120.00403 * 353.17011 * 16 15 13 33 33 H 0.96702 * 116.99949 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 1.9965 -0.4129 -3.6660 7 8 2.6291 -1.4470 -3.7797 8 6 1.6099 0.3427 -4.8569 9 16 0.7035 1.8474 -4.8524 10 6 0.7367 1.9474 -6.6040 11 6 1.3887 0.9198 -7.1347 12 6 1.9068 -0.0196 -6.1714 13 6 2.6260 -1.1761 -6.5184 14 1 2.6419 -2.0234 -5.8489 15 6 3.3235 -1.2298 -7.7347 16 7 3.7192 -2.3805 -8.2103 17 14 3.6861 0.3436 -8.6738 18 1 2.6528 0.5441 -9.7214 19 1 3.6700 1.4948 -7.7359 20 1 5.0237 0.2427 -9.3109 21 6 2.0323 -0.7104 1.2305 22 8 2.7270 -1.6927 1.1195 23 8 1.7081 -0.2518 2.4496 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6055 -1.7197 -1.2952 28 1 3.1264 -0.7994 -1.2056 29 1 1.1487 0.8595 -2.3517 30 1 0.2848 2.7434 -7.1771 31 1 1.5203 0.7979 -8.1998 32 1 3.6197 -3.1854 -7.6782 33 1 2.0536 -0.7410 3.2088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868438712.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:31 Heat of formation + Delta-G solvation = -119.582332 kcal Electronic energy + Delta-G solvation = -19499.306134 eV Core-core repulsion = 16229.821465 eV Total energy + Delta-G solvation = -3269.484669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55264 -38.48161 -36.58493 -36.23117 -35.16622 -33.37857 -32.07006 -29.18336 -27.16106 -25.79964 -24.22177 -21.82229 -20.73864 -20.30592 -19.20733 -18.19062 -17.94775 -16.83928 -16.34263 -15.92325 -15.01442 -14.77803 -14.55746 -14.45303 -13.66760 -13.56857 -13.35756 -13.21847 -12.67188 -12.42143 -12.15174 -11.91096 -11.79962 -11.65518 -11.31331 -11.25074 -11.20824 -10.84278 -10.57431 -10.11712 -10.00882 -9.63838 -9.31521 -8.55075 -8.36699 -7.82856 -7.58020 -7.28471 -4.63968 1.87333 2.05030 2.75095 2.79536 2.96397 3.18337 3.33132 3.43591 3.53343 3.82494 4.12978 4.36228 4.49154 4.71484 4.89997 5.09730 5.23931 5.55307 5.60640 5.71732 5.90355 6.00635 6.03742 6.16116 6.31027 6.61567 6.84215 7.06244 7.18131 7.31595 7.43704 7.72040 8.08653 8.31209 8.47151 8.66905 9.49031 9.74166 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025150 B = 0.004537 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.047493 B = 6170.669476 C = 7032.953970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.115 0.885 4 C 0.143 3.857 5 N -0.751 5.751 6 C 0.600 3.400 7 O -0.557 6.557 8 C -0.432 4.432 9 S -0.024 6.024 10 C -0.175 4.175 11 C -0.161 4.161 12 C 0.112 3.888 13 C -0.425 4.425 14 H 0.110 0.890 15 C 0.034 3.966 16 N -0.782 5.782 17 Si 1.067 2.933 18 H -0.273 1.273 19 H -0.256 1.256 20 H -0.282 1.282 21 C 0.487 3.513 22 O -0.507 6.507 23 O -0.516 6.516 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.389 0.611 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.295 0.705 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 8.081 11.343 15.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.133 0.867 4 C 0.019 3.981 5 N -0.406 5.406 6 C 0.397 3.603 7 O -0.440 6.440 8 C -0.551 4.551 9 S 0.232 5.768 10 C -0.309 4.309 11 C -0.195 4.195 12 C 0.101 3.899 13 C -0.455 4.455 14 H 0.127 0.873 15 C -0.190 4.190 16 N -0.403 5.403 17 Si 0.892 3.108 18 H -0.200 1.200 19 H -0.180 1.180 20 H -0.208 1.208 21 C 0.328 3.672 22 O -0.394 6.394 23 O -0.328 6.328 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.223 0.777 30 H 0.163 0.837 31 H 0.144 0.856 32 H 0.108 0.892 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -5.073 8.605 10.621 14.581 hybrid contribution -0.147 -1.487 0.888 1.739 sum -5.220 7.117 11.510 14.505 Atomic orbital electron populations 1.21798 0.91395 1.03435 1.03566 1.21205 0.98919 1.01439 0.89846 0.86744 1.20869 1.00455 0.94913 0.81903 1.45778 1.61452 1.28047 1.05288 1.16763 0.78480 0.84119 0.80956 1.90701 1.42300 1.25108 1.85851 1.22419 1.32313 1.05272 0.95103 1.82715 1.63586 1.26609 1.03884 1.24922 1.06257 1.02341 0.97424 1.21439 1.01976 0.96436 0.99627 1.17921 0.91927 0.91231 0.88797 1.21040 1.20950 1.00224 1.03313 0.87261 1.27669 0.92258 1.03641 0.95428 1.70398 1.33306 1.00347 1.36279 0.83767 0.77102 0.73888 0.76064 1.19951 1.18040 1.20838 1.23269 0.76857 0.82453 0.84594 1.90771 1.35474 1.25980 1.87163 1.84521 1.72435 1.59060 1.16816 0.91761 0.91103 0.90481 0.91297 0.91168 0.77725 0.83678 0.85637 0.89237 0.73225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.00 37.16 0.33 -1.11 16 2 C -0.09 -1.11 2.86 -91.77 -0.26 -1.37 16 3 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.14 2.36 4.41 -4.04 -0.02 2.35 16 5 N -0.75 -13.90 5.28 -61.75 -0.33 -14.22 16 6 C 0.60 14.51 7.76 -13.05 -0.10 14.41 16 7 O -0.56 -15.63 14.47 5.14 0.07 -15.56 16 8 C -0.43 -10.48 6.51 -35.88 -0.23 -10.71 16 9 S -0.02 -0.47 22.25 -107.50 -2.39 -2.87 16 10 C -0.17 -3.38 11.07 28.86 0.32 -3.06 16 11 C -0.16 -3.57 7.41 -39.12 -0.29 -3.86 16 12 C 0.11 2.86 5.28 -106.21 -0.56 2.30 16 13 C -0.42 -11.67 8.87 -37.94 -0.34 -12.00 16 14 H 0.11 3.33 6.28 -52.49 -0.33 3.00 16 15 C 0.03 0.87 5.49 -17.28 -0.09 0.78 16 16 N -0.78 -20.44 13.64 55.57 0.76 -19.68 16 17 Si 1.07 22.56 24.87 -169.99 -4.23 18.33 16 18 H -0.27 -5.26 6.79 56.52 0.38 -4.88 16 19 H -0.26 -5.37 6.49 56.52 0.37 -5.00 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 21 C 0.49 5.85 7.63 36.01 0.27 6.12 16 22 O -0.51 -7.97 16.68 -18.75 -0.31 -8.29 16 23 O -0.52 -4.43 13.33 -39.24 -0.52 -4.95 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 26 H 0.08 0.77 7.18 -51.93 -0.37 0.40 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.29 7.96 -51.93 -0.41 0.87 16 29 H 0.39 6.20 6.73 -40.82 -0.27 5.93 16 30 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.13 2.59 4.55 -52.48 -0.24 2.35 16 32 H 0.30 7.66 8.73 -40.82 -0.36 7.30 16 33 H 0.41 1.81 9.10 45.56 0.41 2.22 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -32.40 298.31 -5.95 -38.36 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -2.53 Total: 10.54 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.97 Total: -6.16 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.43 Total: -33.90 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.76 Total: -28.80 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.23 Total: 18.33 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -2.39 Total: -2.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.40 -5.95 -38.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868438712.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.225 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds