Wall clock time and date at job start Tue Mar 31 2020 06:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47478 * 2 1 4 4 C 1.53007 * 109.47040 * 119.99856 * 2 1 3 5 5 N 1.46493 * 109.47142 * 294.99935 * 4 2 1 6 6 C 1.34772 * 120.00109 * 179.97438 * 5 4 2 7 7 O 1.21759 * 120.00049 * 0.02562 * 6 5 4 8 8 C 1.46241 * 120.00271 * 179.97438 * 6 5 4 9 9 S 1.75665 * 125.22673 * 0.02562 * 8 6 5 10 10 C 1.75475 * 92.09041 * 179.97438 * 9 8 6 11 11 C 1.32759 * 111.36163 * 0.02562 * 10 9 8 12 12 C 1.39543 * 125.22846 * 180.02562 * 8 6 5 13 13 C 1.40543 * 123.71763 * 359.97438 * 12 8 6 14 14 H 1.08005 * 119.99759 * 335.11111 * 13 12 8 15 15 C 1.40298 * 120.00410 * 155.11410 * 13 12 8 16 16 N 1.30648 * 120.00325 * 162.49602 * 15 13 12 17 17 Si 1.86800 * 119.99708 * 342.49579 * 15 13 12 18 18 H 1.48503 * 109.46994 * 94.03364 * 17 15 13 19 19 H 1.48500 * 109.47002 * 214.03004 * 17 15 13 20 20 H 1.48492 * 109.47402 * 334.02842 * 17 15 13 21 21 C 1.50702 * 109.46956 * 239.99525 * 2 1 3 22 22 O 1.20820 * 120.00164 * 239.99972 * 21 2 1 23 23 O 1.34229 * 119.99732 * 60.00600 * 21 2 1 24 24 H 1.08997 * 109.47171 * 59.99762 * 1 2 3 25 25 H 1.09000 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46992 * 300.00108 * 1 2 3 27 27 H 1.09003 * 109.47028 * 174.99470 * 4 2 1 28 28 H 1.08998 * 109.46880 * 54.99959 * 4 2 1 29 29 H 0.97005 * 120.00069 * 359.97438 * 5 4 2 30 30 H 1.07995 * 124.31556 * 179.73691 * 10 9 8 31 31 H 1.08011 * 122.78437 * 179.97438 * 11 10 9 32 32 H 0.97002 * 119.99684 * 179.97438 * 16 15 13 33 33 H 0.96695 * 117.00061 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 1.9955 -0.4135 3.6660 7 8 2.6280 -1.4477 3.7798 8 6 1.6092 0.3420 4.8569 9 16 0.7002 1.8452 4.8526 10 6 0.7400 1.9491 6.6038 11 6 1.3926 0.9220 7.1345 12 6 1.9059 -0.0203 6.1714 13 6 2.6250 -1.1769 6.5185 14 1 2.6375 -2.0257 5.8507 15 6 3.3264 -1.2290 7.7324 16 7 3.7029 -2.3810 8.2205 17 14 3.7222 0.3487 8.6509 18 1 2.6639 0.6137 9.6584 19 1 5.0327 0.2078 9.3349 20 1 3.7847 1.4788 7.6896 21 6 2.0323 -0.7105 -1.2304 22 8 2.7269 -1.6929 -1.1195 23 8 1.7081 -0.2519 -2.4496 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.1263 -0.7996 1.2056 28 1 1.6053 -1.7198 1.2952 29 1 1.1489 0.8595 2.3517 30 1 0.2947 2.7491 7.1765 31 1 1.5280 0.8022 8.1994 32 1 4.1882 -2.4169 9.0596 33 1 2.0540 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868438713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:34 Heat of formation + Delta-G solvation = -139.700678 kcal Electronic energy + Delta-G solvation = -19481.988562 eV Core-core repulsion = 16211.631497 eV Total energy + Delta-G solvation = -3270.357066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53335 -40.22187 -38.12983 -37.25672 -36.57921 -35.21468 -33.50639 -31.03791 -28.95340 -27.18987 -25.44852 -23.68706 -22.21110 -21.54934 -20.76874 -19.49769 -19.10918 -17.98812 -17.54151 -17.23760 -16.92471 -16.21325 -16.07106 -15.98693 -15.37029 -14.93726 -14.82128 -14.52429 -14.11222 -13.94808 -13.70432 -13.31659 -13.16861 -13.02970 -12.72642 -12.64402 -12.47121 -12.24540 -12.19139 -11.78043 -11.55938 -11.36705 -11.18362 -10.51232 -10.05512 -9.45749 -9.07258 -9.05139 -6.51554 0.11853 1.12264 1.18044 1.20109 1.35865 1.45301 1.62218 1.71223 1.81425 2.06219 2.46830 2.69698 3.17931 3.40452 3.76615 4.03405 4.24586 4.37152 4.45614 4.59669 4.64742 4.81342 4.84819 4.92518 5.06256 5.20256 5.22503 5.34671 5.53883 5.60629 5.79745 6.21312 6.48489 6.60017 6.90457 6.93981 7.68597 8.00522 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.004525 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.602134 B = 6186.903707 C = 7044.003137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 H 0.143 0.857 4 C 0.144 3.856 5 N -0.728 5.728 6 C 0.587 3.413 7 O -0.605 6.605 8 C -0.461 4.461 9 S 0.061 5.939 10 C -0.152 4.152 11 C -0.200 4.200 12 C 0.096 3.904 13 C -0.413 4.413 14 H 0.064 0.936 15 C 0.038 3.962 16 N -0.815 5.815 17 Si 0.974 3.026 18 H -0.232 1.232 19 H -0.271 1.271 20 H -0.247 1.247 21 C 0.497 3.503 22 O -0.553 6.553 23 O -0.500 6.500 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.406 0.594 30 H 0.197 0.803 31 H 0.138 0.862 32 H 0.304 0.696 33 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 12.562 -11.135 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 H 0.161 0.839 4 C 0.019 3.981 5 N -0.382 5.382 6 C 0.383 3.617 7 O -0.490 6.490 8 C -0.580 4.580 9 S 0.319 5.681 10 C -0.287 4.287 11 C -0.233 4.233 12 C 0.085 3.915 13 C -0.444 4.444 14 H 0.082 0.918 15 C -0.182 4.182 16 N -0.439 5.439 17 Si 0.794 3.206 18 H -0.156 1.156 19 H -0.197 1.197 20 H -0.170 1.170 21 C 0.340 3.660 22 O -0.444 6.444 23 O -0.313 6.313 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.242 0.758 30 H 0.214 0.786 31 H 0.155 0.845 32 H 0.115 0.885 33 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -7.190 12.458 -11.728 18.559 hybrid contribution 1.240 -1.472 0.961 2.152 sum -5.949 10.986 -10.767 16.493 Atomic orbital electron populations 1.21820 0.89513 1.03398 1.05070 1.21106 1.00221 1.01815 0.87294 0.83924 1.20842 0.99135 0.94661 0.83424 1.45458 1.60220 1.28234 1.04298 1.17146 0.78152 0.83650 0.82743 1.90713 1.44209 1.27222 1.86847 1.22952 1.32224 1.07945 0.94864 1.82293 1.60426 1.21819 1.03571 1.25590 1.03200 1.01933 0.97965 1.21409 1.04686 0.97297 0.99871 1.18232 0.91405 0.91284 0.90550 1.19632 1.23444 0.99595 1.01723 0.91834 1.27421 0.92535 1.01738 0.96466 1.69630 1.26398 1.29301 1.18618 0.85480 0.78835 0.77531 0.78731 1.15580 1.19737 1.17039 1.23197 0.75769 0.81467 0.85590 1.90776 1.37690 1.28045 1.87874 1.84455 1.71740 1.58764 1.16366 0.88295 0.92674 0.90181 0.93517 0.93469 0.75781 0.78644 0.84517 0.88495 0.70799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.00 71.98 0.65 -1.77 16 2 C -0.09 -1.84 2.86 -11.54 -0.03 -1.87 16 3 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.14 4.86 4.41 86.38 0.38 5.25 16 5 N -0.73 -26.82 5.28 -467.48 -2.47 -29.28 16 6 C 0.59 29.35 7.76 86.32 0.67 30.02 16 7 O -0.60 -36.71 14.47 -4.54 -0.07 -36.77 16 8 C -0.46 -22.30 6.51 24.67 0.16 -22.14 16 9 S 0.06 2.12 22.25 -56.49 -1.26 0.87 16 10 C -0.15 -5.17 11.07 66.64 0.74 -4.43 16 11 C -0.20 -8.40 7.55 22.60 0.17 -8.23 16 12 C 0.10 5.02 5.27 -20.89 -0.11 4.91 16 13 C -0.41 -24.53 9.00 23.33 0.21 -24.32 16 14 H 0.06 4.41 6.29 -2.91 -0.02 4.39 16 15 C 0.04 2.03 5.48 85.37 0.47 2.50 16 16 N -0.82 -44.57 13.92 21.89 0.30 -44.26 16 17 Si 0.97 39.49 24.53 68.60 1.68 41.17 16 18 H -0.23 -8.10 6.64 99.48 0.66 -7.44 16 19 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.25 -10.16 6.73 99.48 0.67 -9.50 16 21 C 0.50 11.27 7.63 71.24 0.54 11.81 16 22 O -0.55 -17.68 16.68 21.98 0.37 -17.32 16 23 O -0.50 -7.11 13.33 -51.41 -0.69 -7.80 16 24 H 0.10 1.19 8.11 -2.39 -0.02 1.17 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.34 7.18 -2.38 -0.02 1.33 16 27 H 0.05 1.81 7.96 -2.39 -0.02 1.79 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.41 11.99 6.73 -92.70 -0.62 11.36 16 30 H 0.20 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.14 5.35 4.55 -2.91 -0.01 5.34 16 32 H 0.30 14.44 8.29 -92.71 -0.77 13.67 16 33 H 0.43 2.62 9.10 -74.06 -0.67 1.95 16 Total: -1.00 -79.01 298.15 1.52 -77.49 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.20 Total: 24.17 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 3.85 Total: -8.27 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -2.16 Total: -73.55 kcal Atomic # 8 Polarization: -61.50 SS G_CDS: -0.38 Total: -61.89 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.68 Total: 41.17 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.26 Total: 0.87 kcal Total: -79.01 1.52 -77.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868438713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.211 kcal (2) G-P(sol) polarization free energy of solvation -79.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds