Wall clock time and date at job start Tue Mar 31 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33852 * 124.51797 * 2 1 4 4 C 1.37421 * 115.10941 * 180.02562 * 3 2 1 5 5 C 1.50695 * 123.35677 * 180.02562 * 4 3 2 6 6 C 1.36748 * 113.28599 * 359.97438 * 4 3 2 7 7 C 1.46392 * 125.46236 * 180.02562 * 6 4 3 8 8 O 1.21629 * 120.00017 * 0.02562 * 7 6 4 9 9 O 1.34899 * 119.99962 * 179.97438 * 7 6 4 10 10 C 1.45206 * 116.99849 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.21297 * 119.99980 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00033 * 180.02562 * 11 10 9 14 14 C 1.37088 * 120.00081 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99914 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00230 * 179.97438 * 14 13 11 17 17 N 1.31408 * 120.00498 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99920 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47208 * 89.99447 * 18 16 14 20 20 H 1.48495 * 109.46914 * 210.00201 * 18 16 14 21 21 H 1.48500 * 109.46598 * 329.99692 * 18 16 14 22 22 S 1.70616 * 124.51458 * 180.35602 * 2 1 3 23 23 H 1.09001 * 109.46982 * 89.99934 * 1 2 3 24 24 H 1.08993 * 109.47295 * 210.00133 * 1 2 3 25 25 H 1.09000 * 109.46844 * 330.00155 * 1 2 3 26 26 H 1.08003 * 122.45013 * 0.05600 * 3 2 1 27 27 H 1.08999 * 109.47286 * 269.97764 * 5 4 3 28 28 H 1.09008 * 109.47414 * 29.97392 * 5 4 3 29 29 H 1.08993 * 109.47612 * 149.97548 * 5 4 3 30 30 H 1.09004 * 109.47122 * 300.00006 * 10 9 7 31 31 H 1.09000 * 109.47070 * 60.00032 * 10 9 7 32 32 H 0.97004 * 119.99472 * 359.97438 * 13 11 10 33 33 H 0.97002 * 120.00283 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2656 1.1029 0.0000 4 6 3.6213 0.8782 -0.0006 5 6 4.6445 1.9845 -0.0001 6 6 3.9493 -0.4493 -0.0005 7 6 5.3105 -0.9879 -0.0004 8 8 6.2635 -0.2321 0.0000 9 8 5.5080 -2.3224 0.0002 10 6 6.8843 -2.7851 0.0008 11 6 6.9076 -4.2919 0.0008 12 8 5.8667 -4.9146 -0.0001 13 7 8.0851 -4.9477 0.0018 14 6 8.1063 -6.3184 0.0013 15 1 7.1795 -6.8728 0.0005 16 6 9.3202 -6.9945 0.0018 17 7 9.3407 -8.3084 0.0018 18 14 10.9234 -6.0356 0.0025 19 1 11.3476 -5.7813 1.4027 20 1 11.9708 -6.8220 -0.6972 21 1 10.7260 -4.7410 -0.6978 22 16 2.4738 -1.4058 -0.0087 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.8430 2.0968 0.0009 27 1 4.8912 2.2517 -1.0276 28 1 4.2378 2.8555 0.5141 29 1 5.5446 1.6469 0.5136 30 1 7.3927 -2.4142 -0.8893 31 1 7.3922 -2.4135 0.8907 32 1 8.9175 -4.4496 0.0022 33 1 10.1881 -8.7804 0.0026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869578248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:05 Heat of formation + Delta-G solvation = -90.189688 kcal Electronic energy + Delta-G solvation = -19009.291953 eV Core-core repulsion = 15741.081845 eV Total energy + Delta-G solvation = -3268.210108 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35978 -38.71078 -38.08133 -36.07876 -34.05253 -32.95062 -31.79403 -29.42205 -28.43122 -27.41715 -24.48196 -22.36645 -22.06147 -19.66384 -19.05953 -18.54858 -18.11695 -16.46875 -16.42201 -16.13938 -15.48609 -14.95992 -14.68637 -14.41031 -14.02732 -13.63251 -13.37364 -13.26548 -13.17512 -12.90531 -12.44481 -12.30343 -12.21257 -12.06617 -11.90819 -11.80777 -11.25823 -10.86508 -10.64375 -10.52620 -10.36709 -10.04201 -9.66849 -8.87515 -8.65962 -8.55860 -8.28522 -6.38463 -3.91316 0.25293 1.33171 1.80009 2.07569 2.60392 2.86698 2.99692 3.04280 3.12844 3.56559 4.04602 4.41131 4.44721 4.84236 4.91942 5.00762 5.12059 5.14986 5.16903 5.31724 5.42328 5.54239 5.55179 5.55955 5.68059 5.76806 5.83591 6.12930 6.20043 6.54374 7.45526 7.77445 8.01625 8.48709 8.84488 9.30679 9.66433 10.73832 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.033333 B = 0.003524 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.800640 B = 7942.993631 C = 8757.040463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.202 4.202 3 C -0.162 4.162 4 C -0.009 4.009 5 C -0.108 4.108 6 C -0.272 4.272 7 C 0.538 3.462 8 O -0.504 6.504 9 O -0.323 6.323 10 C 0.060 3.940 11 C 0.448 3.552 12 O -0.556 6.556 13 N -0.579 5.579 14 C -0.308 4.308 15 H 0.122 0.878 16 C 0.045 3.955 17 N -0.875 5.875 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.268 1.268 22 S 0.267 5.733 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.144 0.856 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.373 0.627 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.220 20.371 -0.004 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.322 4.322 3 C -0.193 4.193 4 C -0.025 4.025 5 C -0.166 4.166 6 C -0.391 4.391 7 C 0.382 3.618 8 O -0.395 6.395 9 O -0.238 6.238 10 C -0.017 4.017 11 C 0.233 3.767 12 O -0.438 6.438 13 N -0.219 5.219 14 C -0.436 4.436 15 H 0.140 0.860 16 C -0.159 4.159 17 N -0.515 5.515 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.193 1.193 22 S 0.538 5.462 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.161 0.839 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.206 0.794 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.844 18.306 -0.013 22.362 hybrid contribution 1.851 2.194 -0.032 2.871 sum -10.993 20.500 -0.045 23.262 Atomic orbital electron populations 1.20410 0.87269 1.03588 1.03192 1.24533 1.01996 0.99124 1.06532 1.19738 0.91766 0.99693 1.08105 1.19452 0.94995 0.92779 0.95235 1.20772 0.97897 0.94774 1.03168 1.23316 0.95401 0.97143 1.23202 1.19651 0.87940 0.81104 0.73062 1.90813 1.42519 1.59191 1.46982 1.86640 1.31088 1.22495 1.83542 1.22770 0.79825 0.95401 1.03739 1.19175 0.85069 0.86975 0.85497 1.90607 1.31672 1.68033 1.53448 1.42023 1.05625 1.07683 1.66610 1.19425 0.96785 0.78770 1.48638 0.85997 1.25032 0.98007 0.95559 0.97271 1.69612 1.27255 1.06156 1.48432 0.86679 0.83783 0.79957 0.79099 1.19399 1.19959 1.19329 1.83725 0.92242 1.04639 1.65573 0.90244 0.90831 0.90323 0.83856 0.90489 0.91431 0.88976 0.89261 0.89245 0.79373 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.31 36.01 0.37 -0.18 16 2 C -0.20 -1.96 6.28 -35.84 -0.23 -2.18 16 3 C -0.16 -1.59 9.82 -41.42 -0.41 -2.00 16 4 C -0.01 -0.11 5.91 -105.46 -0.62 -0.73 16 5 C -0.11 -1.12 9.55 36.00 0.34 -0.78 16 6 C -0.27 -3.89 6.45 -36.84 -0.24 -4.13 16 7 C 0.54 9.04 7.92 34.01 0.27 9.31 16 8 O -0.50 -8.70 14.04 -19.36 -0.27 -8.97 16 9 O -0.32 -6.12 9.61 -47.73 -0.46 -6.58 16 10 C 0.06 1.11 5.96 36.01 0.21 1.32 16 11 C 0.45 10.50 7.86 -10.99 -0.09 10.41 16 12 O -0.56 -15.39 16.08 -14.12 -0.23 -15.61 16 13 N -0.58 -13.85 5.09 -10.96 -0.06 -13.90 16 14 C -0.31 -8.65 10.16 -14.94 -0.15 -8.80 16 15 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 16 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 17 N -0.88 -25.23 13.96 55.50 0.77 -24.45 16 18 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 22 S 0.27 3.31 22.87 -107.50 -2.46 0.85 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.09 1.13 6.01 -51.93 -0.31 0.82 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 33 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -33.31 308.35 -6.88 -40.19 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.48 Total: 6.07 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -0.63 Total: 3.36 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.72 Total: -38.35 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.96 Total: -31.16 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.46 Total: 0.85 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.31 -6.88 -40.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869578248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.004 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds