Wall clock time and date at job start Tue Mar 31 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33852 * 124.51797 * 2 1 4 4 C 1.37421 * 115.10941 * 180.02562 * 3 2 1 5 5 C 1.50695 * 123.35677 * 180.02562 * 4 3 2 6 6 C 1.36748 * 113.28599 * 359.97438 * 4 3 2 7 7 C 1.46392 * 125.46236 * 180.02562 * 6 4 3 8 8 O 1.21629 * 120.00017 * 0.02562 * 7 6 4 9 9 O 1.34899 * 119.99962 * 179.97438 * 7 6 4 10 10 C 1.45206 * 116.99849 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.21297 * 119.99980 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00033 * 180.02562 * 11 10 9 14 14 C 1.37088 * 120.00081 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99914 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00230 * 179.97438 * 14 13 11 17 17 N 1.31408 * 120.00498 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99920 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47208 * 89.99447 * 18 16 14 20 20 H 1.48495 * 109.46914 * 210.00201 * 18 16 14 21 21 H 1.48500 * 109.46598 * 329.99692 * 18 16 14 22 22 S 1.70616 * 124.51458 * 180.35602 * 2 1 3 23 23 H 1.09001 * 109.46982 * 89.99934 * 1 2 3 24 24 H 1.08993 * 109.47295 * 210.00133 * 1 2 3 25 25 H 1.09000 * 109.46844 * 330.00155 * 1 2 3 26 26 H 1.08003 * 122.45013 * 0.05600 * 3 2 1 27 27 H 1.08999 * 109.47286 * 269.97764 * 5 4 3 28 28 H 1.09008 * 109.47414 * 29.97392 * 5 4 3 29 29 H 1.08993 * 109.47612 * 149.97548 * 5 4 3 30 30 H 1.09004 * 109.47122 * 300.00006 * 10 9 7 31 31 H 1.09000 * 109.47070 * 60.00032 * 10 9 7 32 32 H 0.97004 * 119.99472 * 359.97438 * 13 11 10 33 33 H 0.97002 * 120.00283 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2656 1.1029 0.0000 4 6 3.6213 0.8782 -0.0006 5 6 4.6445 1.9845 -0.0001 6 6 3.9493 -0.4493 -0.0005 7 6 5.3105 -0.9879 -0.0004 8 8 6.2635 -0.2321 0.0000 9 8 5.5080 -2.3224 0.0002 10 6 6.8843 -2.7851 0.0008 11 6 6.9076 -4.2919 0.0008 12 8 5.8667 -4.9146 -0.0001 13 7 8.0851 -4.9477 0.0018 14 6 8.1063 -6.3184 0.0013 15 1 7.1795 -6.8728 0.0005 16 6 9.3202 -6.9945 0.0018 17 7 9.3407 -8.3084 0.0018 18 14 10.9234 -6.0356 0.0025 19 1 11.3476 -5.7813 1.4027 20 1 11.9708 -6.8220 -0.6972 21 1 10.7260 -4.7410 -0.6978 22 16 2.4738 -1.4058 -0.0087 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.8430 2.0968 0.0009 27 1 4.8912 2.2517 -1.0276 28 1 4.2378 2.8555 0.5141 29 1 5.5446 1.6469 0.5136 30 1 7.3927 -2.4142 -0.8893 31 1 7.3922 -2.4135 0.8907 32 1 8.9175 -4.4496 0.0022 33 1 10.1881 -8.7804 0.0026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869578248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:05 Heat of formation + Delta-G solvation = -112.086058 kcal Electronic energy + Delta-G solvation = -19010.241451 eV Core-core repulsion = 15741.081845 eV Total energy + Delta-G solvation = -3269.159606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66722 -40.28521 -39.31718 -37.43096 -36.10801 -33.89454 -33.71136 -30.77642 -29.38411 -28.45526 -26.38955 -23.41258 -22.97289 -21.58034 -20.58874 -20.11187 -19.22761 -17.80342 -17.77292 -17.58861 -17.01957 -16.58623 -15.97054 -15.61199 -15.15735 -15.09784 -14.70125 -14.26620 -14.19093 -14.06941 -13.87499 -13.83482 -13.71483 -13.01904 -12.89535 -12.66386 -12.56968 -12.47657 -12.01579 -11.92897 -11.71355 -11.61002 -11.55354 -10.64196 -10.36204 -9.74799 -9.47963 -8.47675 -6.11078 -0.69121 0.42036 0.92969 1.13284 1.26025 1.31077 1.32491 1.44197 1.72164 1.80115 2.19049 2.78316 3.06496 3.65171 3.72986 3.89354 4.05897 4.09723 4.12330 4.19762 4.52586 4.61006 4.73141 4.77445 4.97960 5.03182 5.06012 5.17657 5.36057 5.44582 5.52503 5.82973 6.42224 6.54125 6.74887 7.23062 7.74747 8.68960 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.033333 B = 0.003524 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.800640 B = 7942.993631 C = 8757.040463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.173 4.173 3 C -0.168 4.168 4 C 0.006 3.994 5 C -0.108 4.108 6 C -0.315 4.315 7 C 0.537 3.463 8 O -0.515 6.515 9 O -0.347 6.347 10 C 0.070 3.930 11 C 0.448 3.552 12 O -0.608 6.608 13 N -0.574 5.574 14 C -0.335 4.335 15 H 0.061 0.939 16 C -0.007 4.007 17 N -0.925 5.925 18 Si 0.962 3.038 19 H -0.254 1.254 20 H -0.271 1.271 21 H -0.232 1.232 22 S 0.219 5.781 23 H 0.094 0.906 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.179 0.821 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.393 0.607 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 24.275 -0.054 27.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.294 4.294 3 C -0.197 4.197 4 C -0.011 4.011 5 C -0.166 4.166 6 C -0.432 4.432 7 C 0.383 3.617 8 O -0.407 6.407 9 O -0.262 6.262 10 C -0.007 4.007 11 C 0.235 3.765 12 O -0.492 6.492 13 N -0.216 5.216 14 C -0.463 4.463 15 H 0.079 0.921 16 C -0.207 4.207 17 N -0.564 5.564 18 Si 0.781 3.219 19 H -0.179 1.179 20 H -0.196 1.196 21 H -0.155 1.155 22 S 0.489 5.511 23 H 0.113 0.887 24 H 0.096 0.904 25 H 0.121 0.879 26 H 0.197 0.803 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.230 0.770 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.496 22.239 -0.064 25.509 hybrid contribution 1.533 0.996 -0.014 1.829 sum -10.962 23.235 -0.078 25.691 Atomic orbital electron populations 1.20612 0.84625 1.04986 1.04540 1.24953 1.03398 0.97386 1.03631 1.20068 0.90675 1.01250 1.07714 1.19879 0.96454 0.92121 0.92630 1.20829 0.96820 0.95221 1.03741 1.23299 0.94492 0.98252 1.27201 1.19998 0.89040 0.80032 0.72586 1.90790 1.43057 1.58904 1.47957 1.86638 1.31147 1.24252 1.84211 1.22637 0.80630 0.91036 1.06444 1.20123 0.84022 0.89279 0.83079 1.90581 1.33564 1.69933 1.55143 1.41786 1.06849 1.06198 1.66746 1.19009 0.95343 0.80734 1.51255 0.92132 1.26090 1.02473 0.96629 0.95475 1.69778 1.29083 1.08623 1.48942 0.85414 0.76754 0.79519 0.80222 1.17852 1.19557 1.15512 1.83889 0.93075 1.07015 1.67124 0.88737 0.90413 0.87904 0.80332 0.89681 0.88379 0.91043 0.86446 0.86341 0.77035 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 10.31 71.24 0.73 -0.12 16 2 C -0.17 -2.95 6.28 24.69 0.16 -2.80 16 3 C -0.17 -2.74 9.82 21.08 0.21 -2.54 16 4 C 0.01 0.12 5.91 -20.41 -0.12 0.00 16 5 C -0.11 -1.98 9.55 71.23 0.68 -1.30 16 6 C -0.31 -8.91 6.45 24.04 0.16 -8.75 16 7 C 0.54 18.01 7.92 69.94 0.55 18.57 16 8 O -0.52 -17.35 14.04 19.41 0.27 -17.07 16 9 O -0.35 -13.31 9.61 -51.74 -0.50 -13.81 16 10 C 0.07 2.50 5.96 71.24 0.42 2.92 16 11 C 0.45 21.42 7.86 87.66 0.69 22.11 16 12 O -0.61 -35.47 16.08 15.72 0.25 -35.21 16 13 N -0.57 -27.56 5.09 -306.98 -1.56 -29.12 16 14 C -0.33 -19.63 10.16 84.04 0.85 -18.78 16 15 H 0.06 4.21 7.39 -2.91 -0.02 4.19 16 16 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 17 N -0.92 -55.03 13.96 21.66 0.30 -54.73 16 18 Si 0.96 38.28 27.74 68.60 1.90 40.18 16 19 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 22 S 0.22 5.44 22.87 -56.49 -1.29 4.15 16 23 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.07 1.66 6.01 -2.39 -0.01 1.64 16 30 H 0.12 3.57 8.14 -2.38 -0.02 3.55 16 31 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 32 H 0.39 15.49 5.76 -92.71 -0.53 14.96 16 33 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -78.33 308.35 4.74 -73.59 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.56 Total: 22.61 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.80 Total: 9.43 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -1.26 Total: -83.85 kcal Atomic # 8 Polarization: -66.12 SS G_CDS: 0.03 Total: -66.10 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.90 Total: 40.18 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.29 Total: 4.15 kcal Total: -78.33 4.74 -73.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869578248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.498 kcal (2) G-P(sol) polarization free energy of solvation -78.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds