Wall clock time and date at job start Tue Mar 31 2020 06:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30906 * 123.04470 * 2 1 4 4 C 1.29395 * 117.47509 * 180.02562 * 3 2 1 5 5 C 1.50710 * 124.69803 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.80444 * 3.63455 * 5 4 3 7 7 C 1.54811 * 110.90444 * 240.00338 * 5 4 3 8 8 C 1.54108 * 104.18409 * 220.92470 * 7 5 4 9 9 O 1.43740 * 107.29544 * 357.97102 * 8 7 5 10 10 C 1.44380 * 106.97410 * 26.51513 * 9 8 7 11 11 S 1.70915 * 110.59860 * 359.76665 * 4 3 2 12 12 C 1.36833 * 123.03947 * 180.02562 * 2 1 3 13 13 C 1.46439 * 126.18351 * 359.94761 * 12 2 1 14 14 O 1.21648 * 119.99802 * 0.02562 * 13 12 2 15 15 O 1.34886 * 120.00087 * 179.97438 * 13 12 2 16 16 C 1.34855 * 116.99743 * 180.02562 * 15 13 12 17 17 H 1.08003 * 120.00350 * 0.02562 * 16 15 13 18 18 C 1.38786 * 120.00094 * 180.02562 * 16 15 13 19 19 N 1.31433 * 120.00549 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99555 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99903 * 20 18 16 22 22 H 1.48503 * 109.47261 * 150.00083 * 20 18 16 23 23 H 1.48500 * 109.47454 * 30.00076 * 20 18 16 24 24 H 1.08996 * 109.47339 * 269.98316 * 1 2 3 25 25 H 1.09000 * 109.46510 * 29.97850 * 1 2 3 26 26 H 1.08993 * 109.47152 * 149.97412 * 1 2 3 27 27 H 1.08996 * 110.49137 * 339.60046 * 7 5 4 28 28 H 1.08993 * 110.48524 * 102.25480 * 7 5 4 29 29 H 1.09000 * 109.87695 * 117.39879 * 8 7 5 30 30 H 1.08998 * 109.87346 * 238.55127 * 8 7 5 31 31 H 1.09007 * 110.62181 * 201.43493 * 10 9 8 32 32 H 1.09002 * 110.62343 * 78.43954 * 10 9 8 33 33 H 0.96998 * 120.00324 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2208 1.0973 0.0000 4 6 3.5087 0.9717 -0.0005 5 6 4.4828 2.1217 -0.0012 6 1 3.9571 3.0744 0.0635 7 6 5.3910 2.0756 -1.2540 8 6 6.7876 2.4515 -0.7220 9 8 6.6498 2.7293 0.6815 10 6 5.5103 1.9767 1.1502 11 16 3.9519 -0.6789 0.0054 12 6 2.2530 -1.1471 -0.0005 13 6 1.7336 -2.5162 0.0000 14 8 0.5328 -2.7112 0.0004 15 8 2.5865 -3.5612 -0.0012 16 6 2.0427 -4.7952 -0.0012 17 1 0.9690 -4.9123 -0.0008 18 6 2.8627 -5.9149 -0.0018 19 7 2.3329 -7.1177 -0.0013 20 14 4.7197 -5.7124 -0.0033 21 1 5.2108 -5.6589 -1.4038 22 1 5.3438 -6.8641 0.6963 23 1 5.0810 -4.4534 0.6964 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3632 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 5.4024 1.0725 -1.6803 28 1 5.0566 2.8021 -1.9945 29 1 7.4765 1.6197 -0.8693 30 1 7.1558 3.3367 -1.2406 31 1 5.1179 2.4079 2.0713 32 1 5.7760 0.9300 1.2981 33 1 2.9060 -7.9002 -0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869672335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:59 Heat of formation + Delta-G solvation = -81.322748 kcal Electronic energy + Delta-G solvation = -19630.373799 eV Core-core repulsion = 16362.548190 eV Total energy + Delta-G solvation = -3267.825609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23968 -39.53630 -38.79785 -35.55253 -33.57730 -32.50902 -31.00591 -29.48512 -28.52264 -25.54628 -24.72083 -22.86002 -21.78004 -21.18085 -19.09630 -18.25647 -17.89481 -16.80797 -16.27984 -16.18005 -15.41521 -15.24675 -15.08644 -14.29903 -14.19897 -13.90211 -13.53493 -13.33485 -12.70371 -12.62726 -12.42268 -12.29430 -12.06452 -11.79156 -11.57079 -11.43119 -11.28942 -11.00015 -10.67497 -10.53280 -10.05624 -9.88216 -9.74875 -9.30514 -9.28442 -8.84879 -8.53779 -6.56011 -4.25543 0.34352 1.31488 1.80446 2.57298 3.09615 3.13631 3.25750 3.47778 3.62775 3.85398 4.01870 4.10945 4.22672 4.52618 4.62898 4.87405 4.89422 4.96444 5.07051 5.23850 5.35881 5.43366 5.45488 5.59718 5.71102 5.89940 5.95931 6.03634 6.22315 6.47185 6.57807 7.51118 7.74724 7.85388 8.42427 8.80271 9.45967 10.50971 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.005514 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.408483 B = 5077.003919 C = 6335.008297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.122 3.878 3 N -0.466 5.466 4 C 0.031 3.969 5 C -0.043 4.043 6 H 0.116 0.884 7 C -0.152 4.152 8 C 0.046 3.954 9 O -0.372 6.372 10 C 0.054 3.946 11 S 0.190 5.810 12 C -0.237 4.237 13 C 0.476 3.524 14 O -0.520 6.520 15 O -0.240 6.240 16 C -0.369 4.369 17 H 0.115 0.885 18 C 0.068 3.932 19 N -0.860 5.860 20 Si 0.899 3.101 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.257 1.257 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.085 17.429 -1.021 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.015 4.015 3 N -0.180 5.180 4 C -0.244 4.244 5 C -0.066 4.066 6 H 0.135 0.865 7 C -0.191 4.191 8 C -0.030 4.030 9 O -0.290 6.290 10 C -0.024 4.024 11 S 0.449 5.551 12 C -0.359 4.359 13 C 0.323 3.677 14 O -0.417 6.417 15 O -0.148 6.148 16 C -0.445 4.445 17 H 0.133 0.867 18 C -0.138 4.138 19 N -0.497 5.497 20 Si 0.724 3.276 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.181 1.181 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.759 17.257 -0.887 19.373 hybrid contribution -0.339 -0.355 -0.188 0.525 sum 8.421 16.902 -1.075 18.914 Atomic orbital electron populations 1.20589 0.85899 1.04237 1.03523 1.20830 0.98440 0.84410 0.97834 1.65939 1.04271 1.31553 1.16260 1.26824 0.94157 0.98504 1.04916 1.21330 0.93184 0.95721 0.96327 0.86549 1.23161 0.94393 1.03969 0.97570 1.23213 0.96226 1.01490 0.82116 1.88898 1.48738 1.68453 1.22939 1.23741 0.84438 0.97217 0.97012 1.84037 1.06182 0.99550 1.65364 1.25071 0.95677 0.97159 1.18033 1.18700 0.84961 0.83321 0.80757 1.90693 1.15524 1.84826 1.50644 1.83573 1.39302 1.15597 1.76322 1.20760 0.95796 0.77244 1.50696 0.86746 1.24572 1.00400 0.93459 0.95369 1.69586 1.37082 0.97552 1.45530 0.86287 0.83029 0.78954 0.79334 1.19459 1.20279 1.18062 0.90396 0.91165 0.88036 0.89898 0.89265 0.91745 0.89322 0.87795 0.91411 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 9.72 36.01 0.35 -0.99 16 2 C 0.12 2.18 6.84 -83.50 -0.57 1.61 16 3 N -0.47 -7.49 10.49 -7.46 -0.08 -7.57 16 4 C 0.03 0.43 6.17 -13.30 -0.08 0.34 16 5 C -0.04 -0.46 3.62 -89.76 -0.32 -0.78 16 6 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 7 C -0.15 -1.33 6.57 -25.20 -0.17 -1.50 16 8 C 0.05 0.38 7.70 37.74 0.29 0.67 16 9 O -0.37 -3.96 11.52 -35.23 -0.41 -4.37 16 10 C 0.05 0.54 7.15 38.21 0.27 0.81 16 11 S 0.19 3.02 21.62 -107.50 -2.32 0.70 16 12 C -0.24 -4.69 6.52 -36.79 -0.24 -4.93 16 13 C 0.48 11.53 7.86 34.03 0.27 11.80 16 14 O -0.52 -13.49 13.58 -19.38 -0.26 -13.75 16 15 O -0.24 -6.29 8.47 -22.06 -0.19 -6.48 16 16 C -0.37 -10.68 10.11 30.93 0.31 -10.36 16 17 H 0.12 3.61 7.09 -52.48 -0.37 3.24 16 18 C 0.07 1.88 5.49 -17.52 -0.10 1.78 16 19 N -0.86 -24.53 13.96 55.49 0.77 -23.76 16 20 Si 0.90 20.65 28.62 -169.99 -4.86 15.78 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.10 1.82 6.06 -51.93 -0.31 1.51 16 27 H 0.08 0.77 7.40 -51.93 -0.38 0.38 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.69 7.26 -51.93 -0.38 0.32 16 33 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -31.35 300.41 -6.35 -37.70 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -3.54 Total: -1.24 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 0.01 Total: -1.55 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.70 Total: -31.33 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.86 Total: -24.60 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.86 Total: 15.78 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.32 Total: 0.70 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.35 -6.35 -37.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869672335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.627 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds