Wall clock time and date at job start Tue Mar 31 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30906 * 123.03967 * 2 1 4 4 C 1.29401 * 117.47404 * 180.32139 * 3 2 1 5 5 C 1.50693 * 124.70192 * 179.70927 * 4 3 2 6 6 H 1.09002 * 110.46165 * 357.39303 * 5 4 3 7 7 C 1.54514 * 110.51223 * 120.00248 * 5 4 3 8 8 C 1.54473 * 104.06387 * 118.64267 * 7 5 4 9 9 O 1.44425 * 104.80524 * 23.97992 * 8 7 5 10 10 C 1.44430 * 105.27431 * 319.48834 * 9 8 7 11 11 S 1.70929 * 110.59480 * 359.72783 * 4 3 2 12 12 C 1.36825 * 123.04442 * 179.82048 * 2 1 3 13 13 C 1.46449 * 126.18121 * 359.97438 * 12 2 1 14 14 O 1.21653 * 119.99865 * 359.70708 * 13 12 2 15 15 O 1.34879 * 120.00221 * 179.43149 * 13 12 2 16 16 C 1.34855 * 117.00139 * 180.27053 * 15 13 12 17 17 H 1.08002 * 120.00470 * 0.02562 * 16 15 13 18 18 C 1.38786 * 120.00203 * 179.97438 * 16 15 13 19 19 N 1.31441 * 119.99886 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00297 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46951 * 60.00245 * 20 18 16 22 22 H 1.48502 * 109.47465 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47344 * 300.00405 * 20 18 16 24 24 H 1.09007 * 109.47155 * 270.17456 * 1 2 3 25 25 H 1.08994 * 109.47163 * 30.17378 * 1 2 3 26 26 H 1.09000 * 109.46773 * 150.18241 * 1 2 3 27 27 H 1.09003 * 110.50651 * 237.28787 * 7 5 4 28 28 H 1.08998 * 110.50984 * 359.97438 * 7 5 4 29 29 H 1.09002 * 110.37228 * 142.80972 * 8 7 5 30 30 H 1.08996 * 110.37397 * 265.14560 * 8 7 5 31 31 H 1.09004 * 110.37033 * 281.68333 * 10 9 8 32 32 H 1.09001 * 110.37203 * 159.34503 * 10 9 8 33 33 H 0.97002 * 120.00099 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2207 1.0974 0.0000 4 6 3.5086 0.9719 -0.0064 5 6 4.4826 2.1217 -0.0138 6 1 3.9502 3.0718 -0.0594 7 6 5.3912 2.0696 1.2349 8 6 6.8152 1.9138 0.6567 9 8 6.7317 2.4532 -0.6804 10 6 5.4652 1.9912 -1.1987 11 16 3.9519 -0.6789 -0.0060 12 6 2.2531 -1.1469 0.0036 13 6 1.7337 -2.5162 0.0084 14 8 0.5329 -2.7112 0.0149 15 8 2.5865 -3.5611 0.0000 16 6 2.0428 -4.7952 -0.0006 17 1 0.9692 -4.9124 0.0051 18 6 2.8629 -5.9148 -0.0095 19 7 4.1695 -5.7724 -0.0169 20 14 2.1098 -7.6242 -0.0111 21 1 1.2624 -7.7907 -1.2191 22 1 3.1914 -8.6418 -0.0206 23 1 1.2768 -7.7994 1.2058 24 1 -0.3634 0.0031 1.0277 25 1 -0.3633 0.8884 -0.5165 26 1 -0.3633 -0.8916 -0.5110 27 1 5.3097 2.9949 1.8053 28 1 5.1356 1.2124 1.8577 29 1 7.5304 2.4823 1.2512 30 1 7.0986 0.8618 0.6245 31 1 5.5416 0.9510 -1.5154 32 1 5.1434 2.6192 -2.0295 33 1 4.7427 -6.5549 -0.0228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869672336.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:02 Heat of formation + Delta-G solvation = -84.304115 kcal Electronic energy + Delta-G solvation = -19603.135029 eV Core-core repulsion = 16335.180139 eV Total energy + Delta-G solvation = -3267.954891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10931 -39.36946 -38.58633 -35.34409 -33.43306 -32.34000 -30.83754 -29.32237 -28.32448 -25.44201 -24.55499 -22.96135 -21.86594 -20.94021 -18.98885 -18.13948 -17.57955 -16.66100 -16.15257 -16.03099 -15.38114 -15.06355 -14.83494 -14.44444 -14.06882 -13.78463 -13.60275 -13.10117 -12.60317 -12.44798 -12.34119 -11.96544 -11.75065 -11.64360 -11.46479 -11.31331 -11.10887 -10.93250 -10.59632 -10.55820 -10.04779 -10.00609 -9.57439 -9.15286 -9.11399 -8.73964 -8.38308 -6.60083 -4.21221 0.51117 1.50191 2.00255 2.71446 3.09938 3.10188 3.14191 3.65042 3.78402 3.79882 4.03509 4.38325 4.45258 4.62600 4.75424 4.99678 5.01927 5.03861 5.21398 5.38211 5.46864 5.54338 5.59704 5.72417 5.78127 5.98429 6.08450 6.14192 6.51417 6.53760 6.71413 7.21898 7.75604 7.89475 8.51463 8.87086 9.63134 10.56614 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.004802 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.734381 B = 5829.111827 C = 6881.398370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.114 3.886 3 N -0.468 5.468 4 C 0.018 3.982 5 C -0.042 4.042 6 H 0.113 0.887 7 C -0.151 4.151 8 C 0.042 3.958 9 O -0.370 6.370 10 C 0.051 3.949 11 S 0.210 5.790 12 C -0.235 4.235 13 C 0.462 3.538 14 O -0.538 6.538 15 O -0.202 6.202 16 C -0.370 4.370 17 H 0.101 0.899 18 C 0.042 3.958 19 N -0.852 5.852 20 Si 0.949 3.051 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.267 1.267 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.786 13.088 0.853 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.023 4.023 3 N -0.183 5.183 4 C -0.256 4.256 5 C -0.064 4.064 6 H 0.131 0.869 7 C -0.190 4.190 8 C -0.035 4.035 9 O -0.288 6.288 10 C -0.027 4.027 11 S 0.469 5.531 12 C -0.358 4.358 13 C 0.309 3.691 14 O -0.437 6.437 15 O -0.108 6.108 16 C -0.447 4.447 17 H 0.119 0.881 18 C -0.164 4.164 19 N -0.488 5.488 20 Si 0.773 3.227 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.192 1.192 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.667 13.013 0.740 13.844 hybrid contribution -1.409 -0.968 0.193 1.721 sum 3.257 12.044 0.933 12.512 Atomic orbital electron populations 1.20545 0.86156 1.04019 1.03259 1.20787 0.98325 0.84544 0.98682 1.65928 1.04381 1.31643 1.16349 1.26967 0.94243 0.99021 1.05399 1.21122 0.93435 0.95588 0.96301 0.86929 1.23150 0.94425 1.04221 0.97178 1.23509 0.96716 0.99664 0.83633 1.89140 1.37209 1.73672 1.28793 1.23627 0.82404 1.00854 0.95826 1.84199 1.05780 0.98540 1.64608 1.25129 0.95933 0.97299 1.17391 1.19027 0.85177 0.84006 0.80880 1.90645 1.15801 1.85112 1.52139 1.83936 1.37811 1.14505 1.74571 1.21342 0.93966 0.78191 1.51176 0.88136 1.25442 0.95250 0.99766 0.95945 1.69981 1.02913 1.31608 1.44296 0.85654 0.78442 0.79048 0.79590 1.19221 1.20164 1.19237 0.90687 0.91367 0.88180 0.89459 0.89724 0.88538 0.91542 0.91441 0.87974 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.71 36.01 0.35 -1.01 16 2 C 0.11 2.17 6.84 -83.50 -0.57 1.60 16 3 N -0.47 -8.07 10.49 -7.46 -0.08 -8.14 16 4 C 0.02 0.27 5.96 -13.31 -0.08 0.19 16 5 C -0.04 -0.49 3.61 -90.20 -0.33 -0.81 16 6 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 7 C -0.15 -1.49 6.65 -25.16 -0.17 -1.66 16 8 C 0.04 0.40 7.63 37.93 0.29 0.69 16 9 O -0.37 -4.33 11.65 -35.23 -0.41 -4.74 16 10 C 0.05 0.57 7.14 37.93 0.27 0.84 16 11 S 0.21 3.66 21.84 -107.50 -2.35 1.32 16 12 C -0.23 -4.98 6.52 -36.79 -0.24 -5.22 16 13 C 0.46 11.77 7.86 34.04 0.27 12.04 16 14 O -0.54 -14.21 13.58 -19.39 -0.26 -14.47 16 15 O -0.20 -5.72 9.64 -22.05 -0.21 -5.93 16 16 C -0.37 -10.65 9.65 30.94 0.30 -10.35 16 17 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 18 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 19 N -0.85 -24.02 13.67 55.49 0.76 -23.26 16 20 Si 0.95 20.48 29.55 -169.99 -5.02 15.45 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 24 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.10 1.87 6.07 -51.93 -0.31 1.55 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.89 7.53 -51.93 -0.39 0.50 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.79 7.10 -51.93 -0.37 0.42 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -31.94 301.68 -6.56 -38.50 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.53 Total: -0.62 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 0.00 Total: -2.66 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.68 Total: -31.40 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.89 Total: -25.14 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.35 Total: 1.32 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.94 -6.56 -38.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869672336.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.800 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds