Wall clock time and date at job start Tue Mar 31 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34729 * 116.99812 * 179.97438 * 11 10 9 13 13 O 1.21485 * 120.00232 * 0.02562 * 12 11 10 14 14 C 1.47563 * 119.99713 * 180.02562 * 12 11 10 15 15 C 1.39925 * 120.17015 * 270.00032 * 14 12 11 16 16 F 1.35096 * 120.11499 * 0.02562 * 15 14 12 17 17 C 1.38275 * 119.76955 * 180.02562 * 15 14 12 18 18 C 1.38247 * 120.12720 * 0.02562 * 17 15 14 19 19 C 1.38428 * 120.34869 * 359.97379 * 18 17 15 20 20 C 1.37889 * 120.22576 * 359.72713 * 19 18 17 21 21 N 1.48017 * 120.06548 * 180.27820 * 20 19 18 22 22 O 1.21796 * 119.99931 * 0.28972 * 21 20 19 23 23 O 1.21802 * 119.99872 * 180.30146 * 21 20 19 24 24 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 26 26 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 27 27 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 28 28 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 29 29 H 1.08007 * 119.93455 * 179.97438 * 17 15 14 30 30 H 1.07997 * 119.82696 * 179.97438 * 18 17 15 31 31 H 1.08000 * 119.88764 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5192 -4.9196 0.0033 12 6 2.2530 -6.0495 0.0036 13 8 3.4662 -5.9860 0.0040 14 6 1.5831 -7.3643 0.0036 15 6 1.2634 -7.9907 1.2133 16 9 1.5666 -7.3936 2.3866 17 6 0.6361 -9.2229 1.2036 18 6 0.3262 -9.8344 0.0030 19 6 0.6401 -9.2192 -1.1967 20 6 1.2602 -7.9876 -1.2039 21 7 1.5887 -7.3303 -2.4888 22 8 1.3065 -7.8749 -3.5411 23 8 2.1413 -6.2449 -2.4938 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5576 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 2.8719 -3.6036 0.8927 28 1 2.8719 -3.6052 -0.8873 29 1 0.3885 -9.7090 2.1358 30 1 -0.1634 -10.7970 0.0011 31 1 0.3943 -9.7034 -2.1302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869896577.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:47 Heat of formation + Delta-G solvation = -127.252121 kcal Electronic energy + Delta-G solvation = -21728.030253 eV Core-core repulsion = 17891.999821 eV Total energy + Delta-G solvation = -3836.030432 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.51379 -43.59047 -41.73385 -40.16059 -38.01974 -37.82356 -35.53328 -33.61562 -32.74889 -32.16269 -28.31794 -27.32228 -25.62930 -23.98735 -23.26378 -22.55016 -20.79734 -20.03156 -19.52518 -18.88417 -18.57548 -18.29116 -18.06134 -17.80313 -17.19803 -17.10485 -16.62761 -16.27654 -15.23686 -14.86942 -14.73417 -14.43624 -14.05877 -13.65102 -13.52610 -13.27772 -13.15230 -12.96518 -12.70484 -12.65673 -12.52272 -12.50527 -12.15745 -11.71674 -11.64851 -11.48545 -10.94387 -10.66066 -10.49824 -8.31128 -6.45407 -1.65191 -0.67477 -0.04228 0.00426 0.63774 1.28045 1.40048 1.41803 1.53591 1.86688 2.36245 2.41571 3.03011 3.07459 3.15311 3.29013 3.58640 3.69364 4.06175 4.12259 4.18304 4.34805 4.55256 4.67732 4.71011 4.87855 5.01609 5.21235 5.33135 5.35672 5.64788 5.98889 6.18033 6.26590 6.66660 7.24393 8.82007 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.023312 B = 0.004214 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.824709 B = 6642.871603 C = 7251.531766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.035 3.965 10 C 0.092 3.908 11 O -0.354 6.354 12 C 0.507 3.493 13 O -0.517 6.517 14 C -0.120 4.120 15 C 0.128 3.872 16 F -0.126 7.126 17 C -0.071 4.071 18 C -0.033 4.033 19 C -0.043 4.043 20 C -0.012 4.012 21 N 0.019 4.981 22 O -0.073 6.073 23 O -0.254 6.254 24 H 0.269 0.731 25 H 0.003 0.997 26 H 0.008 0.992 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.214 0.786 30 H 0.233 0.767 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -27.363 1.958 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.590 4.590 8 H 0.084 0.916 9 C -0.002 4.002 10 C 0.020 3.980 11 O -0.270 6.270 12 C 0.351 3.649 13 O -0.407 6.407 14 C -0.123 4.123 15 C 0.108 3.892 16 F -0.104 7.104 17 C -0.089 4.089 18 C -0.051 4.051 19 C -0.061 4.061 20 C -0.095 4.095 21 N 0.538 4.462 22 O -0.315 6.315 23 O -0.443 6.443 24 H 0.078 0.922 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.231 0.769 30 H 0.249 0.751 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.873 -27.245 2.755 27.535 hybrid contribution 0.882 1.992 -0.319 2.202 sum -1.992 -25.253 2.437 25.449 Atomic orbital electron populations 1.70099 1.07898 1.28444 1.50127 1.26005 0.95900 1.03518 0.93764 0.85255 0.78508 0.77355 0.78774 1.19482 1.19971 1.18649 1.21333 0.93724 0.90979 1.53004 0.91639 1.18975 0.94206 0.90473 0.96573 1.23318 0.95385 0.78171 1.01158 1.86592 1.42138 1.15729 1.82504 1.21072 0.85889 0.85861 0.72122 1.90815 1.15532 1.88206 1.46115 1.19080 1.05009 0.93591 0.94630 1.17830 0.99339 0.94021 0.78031 1.91610 1.90836 1.83816 1.44161 1.22287 0.92687 0.89472 1.04481 1.22096 0.94193 1.01722 0.87067 1.21857 0.91018 0.88357 1.04897 1.21137 1.09998 0.98230 0.80153 1.43887 0.98321 1.00546 1.03469 1.94416 1.51916 1.64728 1.20449 1.94745 1.46324 1.09143 1.94059 0.92181 0.97860 0.97316 0.91695 0.92222 0.76918 0.75076 0.77863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.98 45.30 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -33.25 9.11 25.60 0.23 -33.02 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.03 2.04 5.35 29.85 0.16 2.20 16 10 C 0.09 4.75 5.41 71.98 0.39 5.14 16 11 O -0.35 -16.97 10.16 -53.94 -0.55 -17.52 16 12 C 0.51 21.68 4.41 70.28 0.31 21.99 16 13 O -0.52 -24.53 16.79 23.63 0.40 -24.13 16 14 C -0.12 -3.63 5.76 -20.06 -0.12 -3.75 16 15 C 0.13 2.70 7.29 22.69 0.17 2.87 16 16 F -0.13 -3.26 16.83 44.97 0.76 -2.51 16 17 C -0.07 -0.45 10.01 22.28 0.22 -0.23 16 18 C -0.03 -0.04 10.03 22.32 0.22 0.18 16 19 C -0.04 -0.42 9.54 22.23 0.21 -0.20 16 20 C -0.01 -0.30 6.88 36.64 0.25 -0.04 16 21 N 0.02 0.65 4.45 -45.83 -0.20 0.44 16 22 O -0.07 -2.05 18.45 18.89 0.35 -1.70 16 23 O -0.25 -11.04 16.31 23.96 0.39 -10.65 16 24 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 25 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 3.22 8.14 -2.39 -0.02 3.21 16 28 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.21 -0.56 8.06 -2.91 -0.02 -0.58 16 30 H 0.23 -2.47 8.06 -2.91 -0.02 -2.49 16 31 H 0.20 0.64 7.60 -2.91 -0.02 0.61 16 Total: -1.00 -87.87 298.74 7.15 -80.72 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: 1.18 Total: -10.84 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 2.52 Total: -3.97 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.08 Total: -56.72 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: 0.59 Total: -54.01 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.76 Total: -2.51 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -87.87 7.15 -80.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869896577.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.533 kcal (2) G-P(sol) polarization free energy of solvation -87.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds