Wall clock time and date at job start Tue Mar 31 2020 05:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00373 * 2 1 4 4 H 1.48506 * 109.47271 * 240.00695 * 3 2 1 5 5 H 1.48508 * 109.46958 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47362 * 120.00172 * 3 2 1 7 7 C 1.37885 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99466 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46615 * 179.97438 * 9 7 2 11 11 S 1.81002 * 109.47085 * 180.02562 * 10 9 7 12 12 C 1.76199 * 100.00182 * 180.02562 * 11 10 9 13 13 N 1.28989 * 124.82736 * 180.02562 * 12 11 10 14 14 C 1.34783 * 117.85667 * 180.02562 * 13 12 11 15 15 C 1.41184 * 128.69652 * 180.02562 * 14 13 12 16 16 C 1.37183 * 120.48351 * 179.97438 * 15 14 13 17 17 C 1.38715 * 120.60869 * 0.02562 * 16 15 14 18 18 C 1.37925 * 119.95163 * 0.02562 * 17 16 15 19 19 F 1.35097 * 119.91884 * 180.02562 * 18 17 16 20 20 C 1.39438 * 120.16074 * 359.97438 * 18 17 16 21 21 S 1.75803 * 124.83041 * 359.69958 * 12 11 10 22 22 H 0.97000 * 119.99592 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46512 * 60.00600 * 9 7 2 24 24 H 1.08996 * 109.47137 * 300.00160 * 9 7 2 25 25 H 1.09005 * 109.46968 * 60.00578 * 10 9 7 26 26 H 1.09000 * 109.47398 * 300.00455 * 10 9 7 27 27 H 1.08001 * 119.75887 * 359.96691 * 15 14 13 28 28 H 1.07997 * 119.69749 * 180.02562 * 16 15 14 29 29 H 1.08001 * 120.02682 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3402 -5.2296 -0.0026 12 6 2.6900 -6.3622 -0.0032 13 7 2.5737 -7.6468 -0.0044 14 6 3.7037 -8.3815 -0.0042 15 6 3.8431 -9.7865 -0.0057 16 6 5.0882 -10.3623 -0.0058 17 6 6.2304 -9.5751 -0.0038 18 6 6.1192 -8.2003 -0.0012 19 9 7.2320 -7.4343 0.0002 20 6 4.8611 -7.5992 -0.0011 21 16 4.3867 -5.9022 -0.0106 22 1 -0.4849 0.8401 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8725 -3.6047 0.8878 26 1 2.8713 -3.6039 -0.8922 27 1 2.9630 -10.4125 -0.0068 28 1 5.1801 -11.4383 -0.0074 29 1 7.2060 -10.0383 -0.0043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882344950.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:17 Heat of formation + Delta-G solvation = -18.614453 kcal Electronic energy + Delta-G solvation = -16165.035316 eV Core-core repulsion = 13219.221509 eV Total energy + Delta-G solvation = -2945.813807 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.020 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.13350 -41.23061 -37.68515 -35.87080 -33.07408 -31.73186 -31.12747 -27.64149 -26.39124 -24.30169 -23.63232 -22.36083 -20.11039 -18.76255 -18.61075 -17.78775 -17.20681 -17.04002 -16.84473 -16.54046 -16.08734 -15.75656 -15.47209 -15.43248 -14.56390 -14.10711 -13.77786 -13.55159 -13.10828 -13.01802 -12.86092 -12.59062 -12.35673 -12.27581 -12.02964 -11.77923 -11.28154 -11.26297 -10.83155 -10.61627 -10.44621 -9.27541 -8.79881 -8.24872 -6.37576 -0.96714 -0.30714 -0.15381 -0.07110 0.35777 0.96296 1.24446 1.43209 1.44766 1.52994 2.40017 2.43636 2.97056 3.06291 3.09539 3.58549 3.75696 4.01375 4.11732 4.12704 4.39570 4.66837 4.72796 4.82555 5.03920 5.17085 5.31666 5.39550 5.59024 5.69815 6.06495 6.20174 6.74655 7.31813 8.86338 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.031982 B = 0.003729 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.287361 B = 7506.898638 C = 8361.731534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.045 3.955 10 C -0.098 4.098 11 S 0.011 5.989 12 C 0.089 3.911 13 N -0.473 5.473 14 C 0.092 3.908 15 C -0.079 4.079 16 C -0.059 4.059 17 C -0.119 4.119 18 C 0.122 3.878 19 F -0.140 7.140 20 C -0.238 4.238 21 S 0.077 5.923 22 H 0.267 0.733 23 H 0.010 0.990 24 H 0.010 0.990 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.161 0.839 28 H 0.196 0.804 29 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.350 -21.129 -0.017 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.005 3.995 10 C -0.247 4.247 11 S 0.247 5.753 12 C -0.303 4.303 13 N -0.191 5.191 14 C -0.031 4.031 15 C -0.101 4.101 16 C -0.080 4.080 17 C -0.142 4.142 18 C 0.098 3.902 19 F -0.119 7.119 20 C -0.360 4.360 21 S 0.329 5.671 22 H 0.075 0.925 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.179 0.821 28 H 0.213 0.787 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 10.938 -20.342 -0.029 23.096 hybrid contribution 1.468 0.867 0.010 1.705 sum 12.405 -19.475 -0.020 23.090 Atomic orbital electron populations 1.70072 1.07731 1.28218 1.50556 1.25932 0.95778 1.03247 0.94328 0.85456 0.78232 0.77871 0.79248 1.19137 1.20835 1.19121 1.21421 0.93740 0.90957 1.52052 0.91395 1.18706 0.93415 0.90419 0.96916 1.23991 1.01994 0.92840 1.05897 1.85983 1.04557 0.96035 1.88748 1.29406 1.00069 0.97774 1.03006 1.66614 1.30041 1.03240 1.19217 1.19613 0.84057 0.96575 1.02806 1.21212 1.00806 0.88890 0.99216 1.21364 0.88858 1.02682 0.95096 1.21642 1.03149 0.88863 1.00501 1.17051 0.78751 0.90004 1.04429 1.91512 1.50367 1.76055 1.93930 1.23956 0.98766 0.97294 1.15953 1.85383 1.01223 1.04011 1.76505 0.92458 0.97135 0.97120 0.88937 0.88960 0.82147 0.78697 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.33 13.29 21.45 0.28 -54.05 15 2 C 0.01 0.35 5.46 84.66 0.46 0.82 15 3 Si 0.97 42.69 29.54 68.60 2.03 44.72 15 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 15 7 C -0.54 -29.30 9.11 25.60 0.23 -29.06 15 8 H 0.07 3.48 7.74 -2.92 -0.02 3.45 15 9 C 0.04 2.23 4.98 29.85 0.15 2.38 15 10 C -0.10 -3.92 4.58 71.98 0.33 -3.59 15 11 S 0.01 0.42 22.31 -56.49 -1.26 -0.84 15 12 C 0.09 3.10 7.73 130.66 1.01 4.11 15 13 N -0.47 -15.91 10.62 -187.43 -1.99 -17.90 15 14 C 0.09 2.59 6.94 39.77 0.28 2.87 15 15 C -0.08 -1.43 10.10 22.75 0.23 -1.20 15 16 C -0.06 -0.64 9.99 22.14 0.22 -0.42 15 17 C -0.12 -1.63 10.02 22.31 0.22 -1.40 15 18 C 0.12 2.81 7.31 22.48 0.16 2.97 15 19 F -0.14 -3.48 17.26 44.97 0.78 -2.71 15 20 C -0.24 -6.80 6.50 22.91 0.15 -6.65 15 21 S 0.08 2.47 21.78 -56.49 -1.23 1.24 15 22 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15 23 H 0.01 0.55 8.14 -2.39 -0.02 0.54 15 24 H 0.01 0.56 8.14 -2.39 -0.02 0.54 15 25 H 0.09 3.55 7.99 -2.39 -0.02 3.53 15 26 H 0.09 3.54 7.98 -2.40 -0.02 3.52 15 27 H 0.16 2.23 8.06 -2.91 -0.02 2.21 15 28 H 0.20 0.24 8.06 -2.91 -0.02 0.21 15 29 H 0.18 1.14 8.06 -2.91 -0.02 1.12 15 Total: -1.00 -65.63 291.30 3.23 -62.39 By element: Atomic # 1 Polarization: -4.85 SS G_CDS: 1.18 Total: -3.67 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 3.45 Total: -29.19 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -1.71 Total: -71.95 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.49 Total: 0.40 kcal Total: -65.63 3.23 -62.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882344950.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.777 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds