Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47522 * 300.00351 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00717 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.47023 * 125.65037 * 0.30479 * 13 11 10 15 15 C 1.54316 * 107.27276 * 181.01937 * 14 13 11 16 16 C 1.55156 * 102.94559 * 22.19474 * 15 14 13 17 17 H 1.08995 * 111.00719 * 82.57027 * 16 15 14 18 18 C 1.52998 * 111.00761 * 206.38808 * 16 15 14 19 19 F 1.39906 * 109.47369 * 59.99148 * 18 16 15 20 20 F 1.39902 * 109.47188 * 179.97438 * 18 16 15 21 21 F 1.39902 * 109.47012 * 299.99906 * 18 16 15 22 22 C 1.47423 * 125.65041 * 179.97438 * 13 11 10 23 23 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 25 25 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 26 26 H 1.08997 * 109.88157 * 300.44099 * 14 13 11 27 27 H 1.09008 * 109.88327 * 61.60166 * 14 13 11 28 28 H 1.09004 * 110.71946 * 140.55644 * 15 14 13 29 29 H 1.09000 * 110.72444 * 263.65268 * 15 14 13 30 30 H 1.09004 * 110.36778 * 274.75408 * 22 13 11 31 31 H 1.09006 * 110.36423 * 37.07061 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 4.3112 -6.2450 -0.0100 15 6 4.8665 -7.6844 -0.0445 16 6 3.6838 -8.4993 -0.6314 17 1 3.6675 -8.4359 -1.7194 18 6 3.7402 -9.9572 -0.1708 19 9 3.6709 -10.0081 1.2256 20 9 2.6614 -10.6609 -0.7168 21 9 4.9398 -10.5356 -0.5994 22 6 2.4657 -7.7678 -0.0083 23 1 -0.4851 0.8400 0.0004 24 1 3.1252 -3.7316 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 4.6451 -5.6976 -0.8914 27 1 4.6499 -5.7385 0.8938 28 1 5.7382 -7.7459 -0.6961 29 1 5.1132 -8.0268 0.9605 30 1 2.2925 -8.1143 1.0106 31 1 1.5767 -7.9242 -0.6193 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888005903.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = -191.073321 kcal Electronic energy + Delta-G solvation = -19889.025090 eV Core-core repulsion = 16074.583599 eV Total energy + Delta-G solvation = -3814.441491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.43264 -47.92501 -47.90292 -39.93447 -37.42514 -32.65641 -32.45883 -29.92885 -29.18860 -25.84540 -25.38454 -23.39586 -21.48314 -19.66502 -18.90354 -18.46854 -18.06915 -17.61827 -16.69707 -15.91123 -15.25158 -14.85868 -14.83580 -14.80365 -14.39533 -14.30115 -14.08706 -14.04733 -13.95475 -13.76385 -13.31749 -12.84924 -12.66414 -12.46547 -11.98910 -11.82914 -11.69581 -11.38029 -11.09444 -11.05252 -10.78947 -9.84756 -9.54936 -9.10536 -8.69927 -8.27890 -6.54687 -6.24975 -3.96254 2.27755 2.81001 2.93756 3.19543 3.22156 3.28586 3.37704 3.42014 3.56620 3.65930 4.16559 4.18878 4.26617 4.54257 4.75510 4.85288 4.92745 5.10430 5.24361 5.38117 5.44701 5.48750 5.57639 5.62237 5.84358 6.06797 6.18821 7.47969 7.56758 8.32019 8.41742 9.20451 10.82507 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.046968 B = 0.003299 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.002159 B = 8484.282826 C = 8878.420889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.550 3.450 12 O -0.510 6.510 13 N -0.626 5.626 14 C 0.104 3.896 15 C -0.124 4.124 16 C -0.157 4.157 17 H 0.131 0.869 18 C 0.465 3.535 19 F -0.179 7.179 20 F -0.180 7.180 21 F -0.181 7.181 22 C 0.116 3.884 23 H 0.268 0.732 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.291 -18.457 -0.883 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.339 3.661 12 O -0.383 6.383 13 N -0.365 5.365 14 C -0.019 4.019 15 C -0.162 4.162 16 C -0.177 4.177 17 H 0.149 0.851 18 C 0.411 3.589 19 F -0.161 7.161 20 F -0.161 7.161 21 F -0.162 7.162 22 C -0.007 4.007 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.275 -18.583 -0.867 21.252 hybrid contribution 2.067 0.947 0.049 2.274 sum 12.342 -17.636 -0.818 21.541 Atomic orbital electron populations 1.70027 1.05966 1.27414 1.46812 1.24998 0.95031 0.99059 0.94475 0.86105 0.79565 0.81821 0.77934 1.19601 1.20545 1.20536 1.22891 0.94929 0.91523 1.59022 0.90830 1.85436 1.04791 0.96410 1.96728 1.23510 1.06617 0.94599 1.04965 1.20094 0.85618 0.85382 0.74977 1.90729 1.14857 1.85003 1.47756 1.48449 1.06611 1.05017 1.76388 1.22000 0.80338 0.96434 1.03138 1.22741 0.96569 0.93974 1.02878 1.23759 1.00401 0.88901 1.04643 0.85115 1.20176 0.73591 0.89874 0.75294 1.93191 1.95973 1.96959 1.29930 1.93215 1.55888 1.81439 1.85586 1.93195 1.46673 1.86698 1.89680 1.22096 0.95763 0.81310 1.01562 0.92187 0.89120 0.89117 0.90458 0.90350 0.88414 0.89202 0.90245 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.89 5.35 36.01 0.19 -2.70 16 11 C 0.55 10.23 7.87 -10.98 -0.09 10.14 16 12 O -0.51 -11.54 16.12 5.55 0.09 -11.46 16 13 N -0.63 -8.42 3.32 -170.37 -0.57 -8.98 16 14 C 0.10 0.96 6.48 -3.07 -0.02 0.94 16 15 C -0.12 -0.83 6.17 -24.90 -0.15 -0.98 16 16 C -0.16 -1.24 3.06 -88.34 -0.27 -1.51 16 17 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 18 C 0.47 3.98 2.77 37.16 0.10 4.08 16 19 F -0.18 -1.70 15.75 2.25 0.04 -1.66 16 20 F -0.18 -1.74 17.25 2.25 0.04 -1.70 16 21 F -0.18 -1.55 17.10 2.25 0.04 -1.51 16 22 C 0.12 1.30 6.28 -2.40 -0.02 1.29 16 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 25 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.57 7.56 -51.93 -0.39 0.18 16 30 H 0.08 0.89 7.26 -51.93 -0.38 0.51 16 31 H 0.09 1.12 8.03 -51.93 -0.42 0.71 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -33.53 295.01 -5.74 -39.27 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -3.27 Total: -4.00 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.05 Total: -1.49 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.17 Total: -34.14 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.11 Total: -4.88 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.53 -5.74 -39.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888005903.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.803 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds