Wall clock time and date at job start Tue Mar 31 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86792 * 120.00337 * 2 1 4 4 H 1.48500 * 109.47510 * 270.00240 * 3 2 1 5 5 H 1.48503 * 109.47291 * 30.00202 * 3 2 1 6 6 H 1.48502 * 109.47112 * 150.00077 * 3 2 1 7 7 C 1.38804 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00089 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00167 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47430 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99523 * 0.02562 * 11 10 9 13 13 O 1.34222 * 119.99982 * 179.97438 * 11 10 9 14 14 C 1.45204 * 117.00014 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47432 * 179.97438 * 14 13 11 16 16 O 1.42900 * 109.47155 * 65.00464 * 15 14 13 17 17 C 1.35676 * 117.00228 * 180.02562 * 16 15 14 18 18 C 1.38922 * 119.68298 * 180.02562 * 17 16 15 19 19 C 1.38380 * 119.11001 * 179.97438 * 18 17 16 20 20 C 1.38829 * 118.48477 * 0.02562 * 19 18 17 21 21 C 1.38043 * 119.28775 * 0.25231 * 20 19 18 22 22 N 1.31967 * 120.83588 * 359.49537 * 21 20 19 23 23 H 0.97003 * 119.99717 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47008 * 59.99754 * 10 9 7 25 25 H 1.08997 * 109.47139 * 300.00326 * 10 9 7 26 26 H 1.09005 * 109.46314 * 60.00134 * 14 13 11 27 27 H 1.08998 * 109.47289 * 300.00411 * 14 13 11 28 28 H 1.08997 * 109.47563 * 305.00757 * 15 14 13 29 29 H 1.08994 * 109.47321 * 185.00269 * 15 14 13 30 30 H 1.08002 * 120.44516 * 0.02562 * 18 17 16 31 31 H 1.08002 * 120.75560 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.35145 * 179.97438 * 20 19 18 33 33 H 1.08003 * 119.57882 * 179.72181 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5156 -3.8915 -0.0029 11 6 1.9872 -5.3028 -0.0036 12 8 0.7954 -5.5016 -0.0038 13 8 2.8404 -6.3390 -0.0049 14 6 2.2607 -7.6703 -0.0049 15 6 3.3796 -8.7138 -0.0071 16 8 4.1180 -8.6230 1.2129 17 6 5.1535 -9.4852 1.3718 18 6 5.9088 -9.4459 2.5371 19 6 6.9619 -10.3310 2.6870 20 6 7.2238 -11.2283 1.6605 21 6 6.4354 -11.2073 0.5276 22 7 5.4347 -10.3543 0.4156 23 1 -0.4850 0.8401 0.0004 24 1 3.1243 -3.7322 0.8872 25 1 3.1243 -3.7306 -0.8927 26 1 1.6437 -7.7978 -0.8943 27 1 1.6455 -7.7987 0.8856 28 1 4.0462 -8.5300 -0.8497 29 1 2.9470 -9.7102 -0.0967 30 1 5.6767 -8.7347 3.3160 31 1 7.5662 -10.3240 3.5821 32 1 8.0386 -11.9321 1.7456 33 1 6.6378 -11.9002 -0.2758 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893666319.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:40 Heat of formation + Delta-G solvation = -87.519033 kcal Electronic energy + Delta-G solvation = -18376.228291 eV Core-core repulsion = 15108.133991 eV Total energy + Delta-G solvation = -3268.094300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84723 -40.00252 -38.20850 -36.11208 -32.78735 -32.47797 -31.75123 -30.21626 -29.09638 -25.55945 -24.44649 -23.53372 -22.51629 -20.97249 -18.83247 -17.95609 -17.34726 -17.07734 -16.43673 -16.23393 -16.00607 -15.57035 -14.87173 -14.83927 -14.17207 -14.14623 -13.68878 -13.53773 -13.33709 -12.75857 -12.57539 -12.27615 -12.04424 -11.84581 -11.25851 -11.09096 -11.06128 -10.80713 -10.52505 -10.26748 -10.00985 -9.93056 -9.89152 -9.10767 -8.79844 -8.35103 -6.59434 -6.26588 -3.99094 0.84408 0.96116 2.62618 2.66461 2.74944 3.21233 3.24462 3.29274 3.48335 3.52746 3.98764 4.15579 4.51214 4.62235 4.71340 4.82766 4.85962 4.93922 5.02445 5.09249 5.21329 5.34942 5.39360 5.46560 5.62864 5.67383 5.80072 5.87384 6.10328 6.11254 6.66216 6.99810 7.54335 7.56299 8.16827 8.31290 9.18911 10.80938 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.002693 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.760721 B =10393.966352 C =11019.357478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.076 0.924 9 S -0.059 6.059 10 C -0.128 4.128 11 C 0.480 3.520 12 O -0.489 6.489 13 O -0.356 6.356 14 C 0.065 3.935 15 C 0.076 3.924 16 O -0.297 6.297 17 C 0.326 3.674 18 C -0.190 4.190 19 C -0.041 4.041 20 C -0.217 4.217 21 C 0.139 3.861 22 N -0.543 5.543 23 H 0.269 0.731 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.569 -22.228 2.650 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.684 4.684 8 H 0.094 0.906 9 S 0.167 5.833 10 C -0.276 4.276 11 C 0.321 3.679 12 O -0.375 6.375 13 O -0.274 6.274 14 C -0.010 4.010 15 C 0.000 4.000 16 O -0.203 6.203 17 C 0.147 3.853 18 C -0.211 4.211 19 C -0.067 4.067 20 C -0.237 4.237 21 C -0.017 4.017 22 N -0.268 5.268 23 H 0.079 0.921 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.272 -22.190 2.072 24.975 hybrid contribution 2.290 1.040 0.531 2.570 sum 13.561 -21.150 2.602 25.259 Atomic orbital electron populations 1.70013 1.05985 1.27618 1.46638 1.25008 0.95075 0.99122 0.94357 0.86113 0.79411 0.81260 0.78410 1.20200 1.20715 1.19580 1.22844 0.95031 0.91154 1.59323 0.90582 1.85400 1.04409 0.96579 1.96885 1.23295 1.06943 0.90865 1.06515 1.23311 0.85157 0.87115 0.72268 1.90666 1.16906 1.85663 1.44241 1.86571 1.41033 1.14956 1.84829 1.23077 0.94692 0.79194 1.03992 1.22740 0.93103 0.98260 0.85855 1.86338 1.40563 1.53159 1.40280 1.19894 0.87511 0.87642 0.90231 1.21153 0.97946 1.03751 0.98241 1.21434 0.94520 0.92184 0.98537 1.21978 1.03306 1.02622 0.95821 1.22420 0.88801 0.93890 0.96588 1.67355 1.20992 1.07713 1.30723 0.92080 0.87866 0.87914 0.88790 0.90132 0.90224 0.89345 0.83900 0.84151 0.84613 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 8 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.13 -2.67 6.27 36.01 0.23 -2.45 16 11 C 0.48 9.41 7.98 36.01 0.29 9.70 16 12 O -0.49 -10.82 15.61 -18.75 -0.29 -11.11 16 13 O -0.36 -5.89 10.19 -42.00 -0.43 -6.32 16 14 C 0.06 0.84 5.84 37.15 0.22 1.06 16 15 C 0.08 0.85 5.70 37.15 0.21 1.06 16 16 O -0.30 -3.85 10.09 -22.29 -0.22 -4.08 16 17 C 0.33 3.82 7.49 -17.12 -0.13 3.69 16 18 C -0.19 -1.82 10.04 -39.28 -0.39 -2.21 16 19 C -0.04 -0.30 10.17 -39.31 -0.40 -0.69 16 20 C -0.22 -1.44 10.11 -39.43 -0.40 -1.84 16 21 C 0.14 1.11 11.18 -17.56 -0.20 0.91 16 22 N -0.54 -5.94 9.22 -13.33 -0.12 -6.06 16 23 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.10 2.01 8.14 -51.92 -0.42 1.59 16 25 H 0.10 1.98 8.14 -51.92 -0.42 1.56 16 26 H 0.09 1.09 8.13 -51.93 -0.42 0.67 16 27 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 28 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 29 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.16 0.80 8.06 -52.48 -0.42 0.37 16 LS Contribution 316.64 15.07 4.77 4.77 Total: -1.00 -34.20 316.64 -6.94 -41.14 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -3.77 Total: -2.02 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -0.38 Total: -3.63 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.61 Total: -31.22 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.95 Total: -21.51 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.20 -6.94 -41.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893666319.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.376 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds