Wall clock time and date at job start Tue Mar 31 2020 05:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47230 * 281.46142 * 3 2 1 5 5 C 1.36933 * 120.00427 * 272.74434 * 4 3 2 6 6 H 1.08003 * 120.00336 * 188.74931 * 5 4 3 7 7 C 1.38816 * 119.99842 * 8.73948 * 5 4 3 8 8 N 1.31621 * 119.99632 * 19.53439 * 7 5 4 9 9 Si 1.86794 * 120.00366 * 199.52925 * 7 5 4 10 10 H 1.48504 * 109.47259 * 84.98607 * 9 7 5 11 11 H 1.48494 * 109.47435 * 204.98874 * 9 7 5 12 12 H 1.48508 * 109.47216 * 324.98947 * 9 7 5 13 13 C 1.46501 * 119.99853 * 92.73886 * 4 3 2 14 14 C 1.50702 * 109.47276 * 270.00136 * 13 4 3 15 15 O 1.34349 * 125.80118 * 270.33619 * 14 13 4 16 16 C 1.34300 * 109.48515 * 180.15253 * 15 14 13 17 17 C 1.34515 * 108.43490 * 359.55612 * 16 15 14 18 18 C 1.34571 * 125.79577 * 89.99789 * 14 13 4 19 19 Br 1.89098 * 126.58776 * 359.97438 * 18 14 13 20 20 H 4.40644 * 5.51305 * 179.97438 * 4 1 2 21 21 H 1.08996 * 109.47135 * 161.46367 * 3 2 1 22 22 H 1.08995 * 109.47363 * 41.46086 * 3 2 1 23 23 H 0.97001 * 119.99521 * 179.97438 * 8 7 5 24 24 H 1.08998 * 109.47036 * 150.00436 * 13 4 3 25 25 H 1.08997 * 109.47269 * 29.99975 * 13 4 3 26 26 H 1.08000 * 125.77664 * 179.82535 * 16 15 14 27 27 H 1.07998 * 126.57000 * 180.26174 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2736 1.3537 5 6 3.3088 0.7553 2.2403 6 1 3.7995 0.5763 3.1856 7 6 2.8549 2.0285 1.9240 8 7 1.9424 2.1883 0.9890 9 14 3.5390 3.5147 2.8253 10 1 4.7971 3.9549 2.1704 11 1 2.5468 4.6187 2.7838 12 1 3.8171 3.1520 4.2383 13 6 3.4364 -1.6487 1.7589 14 6 2.2020 -2.2814 2.3479 15 8 1.8449 -2.2510 3.6427 16 6 0.6916 -2.9197 3.8051 17 6 0.2934 -3.3787 2.6050 18 6 1.2669 -2.9674 1.6653 19 35 1.2559 -3.3135 -0.1937 20 1 -1.0499 0.0002 0.0000 21 1 3.0089 0.9751 -0.3267 22 1 3.0097 -0.7693 -0.6804 23 1 1.6250 3.0780 0.7683 24 1 4.2319 -1.6415 2.5040 25 1 3.7584 -2.2214 0.8891 26 1 0.1699 -3.0610 4.7402 27 1 -0.5987 -3.9515 2.3989 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897163163.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:32 Heat of formation + Delta-G solvation = 108.302882 kcal Electronic energy + Delta-G solvation = -14927.973865 eV Core-core repulsion = 12316.066554 eV Total energy + Delta-G solvation = -2611.907311 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.97454 -36.25809 -32.99677 -31.82122 -31.33193 -30.06039 -28.85278 -26.14515 -25.37586 -21.89052 -21.08687 -19.70140 -17.50350 -16.75858 -16.37451 -15.55047 -14.91457 -14.14479 -13.71578 -13.52662 -12.91153 -12.40135 -12.33806 -12.11590 -11.56149 -11.40602 -10.96605 -10.92674 -10.67895 -10.29656 -10.00618 -9.63530 -9.00773 -8.87073 -8.75547 -8.21953 -7.82728 -7.22726 -5.83040 -3.26182 2.21278 2.31367 2.93494 3.34122 3.41125 3.42316 3.65574 4.28590 4.51031 4.68885 5.17684 5.35389 5.40978 5.63075 5.72925 6.01025 6.09399 6.16539 6.32900 6.58518 6.72226 6.80940 7.33029 7.54319 7.62953 7.68982 8.14581 9.02179 9.42342 9.64313 10.06090 11.15564 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.025320 B = 0.008165 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.560170 B = 3428.350704 C = 3946.603220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.077 4.077 3 C 0.267 3.733 4 N -0.567 5.567 5 C -0.268 4.268 6 H 0.082 0.918 7 C 0.005 3.995 8 N -0.885 5.885 9 Si 0.910 3.090 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.280 1.280 13 C 0.206 3.794 14 C 0.047 3.953 15 O -0.162 6.162 16 C -0.059 4.059 17 C -0.189 4.189 18 C -0.195 4.195 19 Br -0.030 7.030 20 H 0.182 0.818 21 H 0.101 0.899 22 H 0.039 0.961 23 H 0.257 0.743 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.196 0.804 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 -11.170 -0.863 11.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.080 4.080 3 C 0.143 3.857 4 N -0.285 5.285 5 C -0.396 4.396 6 H 0.100 0.900 7 C -0.194 4.194 8 N -0.528 5.528 9 Si 0.740 3.260 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.205 1.205 13 C 0.077 3.923 14 C -0.011 4.011 15 O -0.056 6.056 16 C -0.127 4.127 17 C -0.209 4.209 18 C -0.277 4.277 19 Br 0.054 6.946 20 H 0.200 0.800 21 H 0.119 0.881 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.213 0.787 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.499 -10.924 -1.369 11.021 hybrid contribution -0.830 0.895 1.001 1.578 sum -1.329 -10.029 -0.368 10.124 Atomic orbital electron populations 1.23903 0.95102 1.08600 1.04705 1.23715 0.94769 0.93377 0.96135 1.18103 0.83455 0.99885 0.84256 1.44658 1.73616 0.99885 1.10340 1.19368 1.32801 0.86756 1.00713 0.90041 1.24934 0.97079 0.98373 0.99010 1.70122 1.27363 1.21632 1.33680 0.86187 0.78360 0.82296 0.79200 1.21133 1.21809 1.20545 1.19953 0.89296 0.85812 0.97283 1.24931 1.01005 0.95108 0.80087 1.84185 1.34891 1.58693 1.27851 1.23775 0.89146 0.99992 0.99804 1.21469 1.01163 1.06280 0.92014 1.21663 1.01531 1.12767 0.91748 1.96486 1.98840 1.94813 1.04495 0.80026 0.88127 0.94304 0.93258 0.90871 0.89880 0.78686 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.25 19.25 29.55 0.57 -6.68 15 2 C -0.08 -1.89 9.97 -37.12 -0.37 -2.26 15 3 C 0.27 6.28 5.54 -6.83 -0.04 6.24 15 4 N -0.57 -13.51 2.48 -177.95 -0.44 -13.96 15 5 C -0.27 -7.02 9.73 -15.06 -0.15 -7.17 15 6 H 0.08 2.10 7.89 -52.48 -0.41 1.69 15 7 C 0.01 0.14 5.05 -17.43 -0.09 0.05 15 8 N -0.89 -24.64 8.71 55.49 0.48 -24.15 15 9 Si 0.91 21.24 29.60 -169.99 -5.03 16.21 15 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 13 C 0.21 4.12 6.04 -5.19 -0.03 4.09 15 14 C 0.05 0.96 6.91 -35.60 -0.25 0.71 15 15 O -0.16 -3.27 10.65 5.59 0.06 -3.21 15 16 C -0.06 -0.98 12.09 29.42 0.36 -0.63 15 17 C -0.19 -3.25 10.91 -39.69 -0.43 -3.68 15 18 C -0.20 -3.74 6.60 -39.67 -0.26 -4.00 15 19 Br -0.03 -0.52 32.21 -68.01 -2.19 -2.72 15 20 H 0.18 3.86 7.80 -54.09 -0.42 3.43 15 21 H 0.10 2.57 6.33 -51.93 -0.33 2.25 15 22 H 0.04 0.81 7.86 -51.93 -0.41 0.40 15 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 24 H 0.07 1.37 8.03 -51.93 -0.42 0.95 15 25 H 0.08 1.48 7.48 -51.93 -0.39 1.09 15 26 H 0.20 2.36 8.06 -52.49 -0.42 1.94 15 27 H 0.14 2.11 8.06 -52.49 -0.42 1.69 15 LS Contribution 266.86 15.07 4.02 4.02 Total: -1.00 -29.63 266.86 -6.15 -35.78 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -2.36 Total: 1.34 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -0.69 Total: -13.32 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.04 Total: -38.11 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.06 Total: -3.21 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.19 Total: -2.72 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.63 -6.15 -35.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163163.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.078 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds