Wall clock time and date at job start Tue Mar 31 2020 06:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47118 * 2 1 4 4 C 1.50705 * 109.47531 * 240.00037 * 2 1 3 5 5 O 1.20828 * 119.99968 * 240.00367 * 4 2 1 6 6 O 1.34225 * 119.99831 * 59.99614 * 4 2 1 7 7 N 1.46501 * 109.47322 * 119.99865 * 2 1 3 8 8 C 1.46502 * 119.99880 * 59.99637 * 7 2 1 9 9 C 1.34781 * 120.00040 * 240.00312 * 7 2 1 10 10 O 1.21757 * 119.99852 * 358.89667 * 9 7 2 11 11 C 1.46240 * 119.99838 * 178.89401 * 9 7 2 12 12 S 1.75663 * 125.22845 * 8.45125 * 11 9 7 13 13 C 1.75474 * 92.09057 * 179.97438 * 12 11 9 14 14 C 1.32765 * 111.36549 * 0.02562 * 13 12 11 15 15 C 1.39544 * 125.22661 * 188.15044 * 11 9 7 16 16 C 1.40543 * 123.71585 * 0.02562 * 15 11 9 17 17 H 1.08000 * 119.99699 * 331.34234 * 16 15 11 18 18 C 1.40304 * 119.99846 * 151.33552 * 16 15 11 19 19 N 1.30649 * 119.99471 * 169.32857 * 18 16 15 20 20 Si 1.86794 * 120.00154 * 349.33276 * 18 16 15 21 21 H 1.48497 * 109.47082 * 88.09607 * 20 18 16 22 22 H 1.48506 * 109.47073 * 208.09383 * 20 18 16 23 23 H 1.48497 * 109.47438 * 328.08985 * 20 18 16 24 24 H 1.08999 * 109.47118 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47163 * 60.00435 * 1 2 3 26 26 H 1.08996 * 109.47395 * 299.99821 * 1 2 3 27 27 H 0.96705 * 116.99743 * 180.02562 * 6 4 2 28 28 H 1.09003 * 109.46530 * 96.41033 * 8 7 2 29 29 H 1.09000 * 109.47035 * 216.40245 * 8 7 2 30 30 H 1.09001 * 109.47379 * 336.41304 * 8 7 2 31 31 H 1.07995 * 124.31671 * 179.97438 * 13 12 11 32 32 H 1.07995 * 122.78769 * 179.97438 * 14 13 12 33 33 H 0.97007 * 119.99509 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7270 -1.6928 -1.1196 6 8 1.7081 -0.2518 -2.4496 7 7 2.0183 -0.6906 1.1962 8 6 1.6644 -2.0931 1.4281 9 6 2.7932 -0.0355 2.0834 10 8 3.1038 1.1242 1.8806 11 6 3.2607 -0.7177 3.2895 12 16 3.0768 -2.4333 3.6191 13 6 3.8867 -2.2879 5.1689 14 6 4.2598 -1.0356 5.4041 15 6 3.9267 -0.1068 4.3528 16 6 4.2350 1.2637 4.3961 17 1 4.3961 1.8102 3.4786 18 6 4.3334 1.9219 5.6312 19 7 4.8201 3.1330 5.6890 20 14 3.7687 1.0667 7.1929 21 1 4.8922 0.2778 7.7592 22 1 3.3292 2.0829 8.1826 23 1 2.6358 0.1596 6.8786 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 2.0536 -0.7410 -3.2088 28 1 2.4706 -2.7348 1.0726 29 1 1.5124 -2.2579 2.4948 30 1 0.7469 -2.3302 0.8893 31 1 4.0589 -3.1118 5.8456 32 1 4.7740 -0.7382 6.3060 33 1 4.8878 3.5882 6.5430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901451838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:14 Heat of formation + Delta-G solvation = -113.257943 kcal Electronic energy + Delta-G solvation = -20330.088896 eV Core-core repulsion = 17060.878473 eV Total energy + Delta-G solvation = -3269.210423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.70085 -40.22584 -38.18199 -37.21486 -36.47747 -35.18989 -32.96075 -30.85296 -28.44573 -27.95800 -25.88000 -23.98536 -22.91117 -21.23004 -20.46530 -19.36477 -18.68093 -18.13291 -17.80625 -17.37270 -16.84368 -16.45441 -15.95397 -15.75212 -15.35747 -15.00644 -14.50965 -14.27217 -14.15188 -13.91616 -13.80775 -13.51064 -13.25119 -13.11377 -12.78461 -12.63640 -12.56885 -12.44936 -12.14501 -11.79088 -11.60146 -11.23561 -10.92259 -10.54866 -9.79583 -9.44452 -9.04265 -8.98428 -6.53142 0.09949 1.09627 1.18458 1.25854 1.34564 1.42461 1.59991 1.66424 1.75718 2.06167 2.24511 2.50441 3.14554 3.79237 3.97298 4.10951 4.23444 4.27422 4.42062 4.58557 4.67368 4.72245 4.81991 4.89841 4.99455 5.17236 5.23580 5.31801 5.47288 5.62698 5.78470 6.18928 6.41806 6.49602 6.73237 6.93648 7.51416 8.03283 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.005980 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.169049 B = 4681.412061 C = 5404.263615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.142 3.858 3 H 0.114 0.886 4 C 0.478 3.522 5 O -0.537 6.537 6 O -0.501 6.501 7 N -0.612 5.612 8 C 0.076 3.924 9 C 0.591 3.409 10 O -0.596 6.596 11 C -0.458 4.458 12 S 0.093 5.907 13 C -0.187 4.187 14 C -0.205 4.205 15 C 0.101 3.899 16 C -0.413 4.413 17 H 0.065 0.935 18 C 0.038 3.962 19 N -0.821 5.821 20 Si 0.976 3.024 21 H -0.238 1.238 22 H -0.270 1.270 23 H -0.247 1.247 24 H 0.080 0.920 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.428 0.572 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.187 0.813 32 H 0.134 0.866 33 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.299 -10.457 -5.482 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 H 0.132 0.868 4 C 0.319 3.681 5 O -0.426 6.426 6 O -0.315 6.315 7 N -0.346 5.346 8 C -0.068 4.068 9 C 0.389 3.611 10 O -0.482 6.482 11 C -0.577 4.577 12 S 0.353 5.647 13 C -0.320 4.320 14 C -0.237 4.237 15 C 0.090 3.910 16 C -0.444 4.444 17 H 0.083 0.917 18 C -0.181 4.181 19 N -0.445 5.445 20 Si 0.797 3.203 21 H -0.163 1.163 22 H -0.196 1.196 23 H -0.171 1.171 24 H 0.099 0.901 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.291 0.709 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.205 0.795 32 H 0.151 0.849 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.628 -10.861 -5.923 15.676 hybrid contribution 1.331 1.228 0.592 1.905 sum -8.298 -9.632 -5.330 13.786 Atomic orbital electron populations 1.22053 0.88607 1.04437 1.04899 1.20550 0.98231 0.97336 0.80240 0.86839 1.23945 0.76402 0.82039 0.85670 1.90702 1.36626 1.27641 1.87639 1.84483 1.71760 1.58910 1.16304 1.47347 1.52793 1.13523 1.20972 1.22009 1.01998 0.80300 1.02542 1.17204 0.76739 0.84922 0.82239 1.90682 1.60661 1.19136 1.77676 1.23019 1.30593 0.97819 1.06220 1.82996 1.61619 1.05855 1.14225 1.26201 1.01929 1.00120 1.03793 1.21429 1.07261 0.93995 1.01010 1.18222 0.88448 0.93526 0.90809 1.19594 1.36041 0.93824 0.94954 0.91674 1.27339 0.91110 0.95434 1.04194 1.69600 1.30363 1.13547 1.30996 0.85467 0.81117 0.78582 0.75118 1.16266 1.19647 1.17064 0.90128 0.87854 0.91062 0.70940 0.92480 0.89622 0.87826 0.79538 0.84895 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.11 71.98 0.66 -2.48 16 2 C 0.14 4.55 3.15 44.25 0.14 4.69 16 3 H 0.11 4.18 6.90 -2.39 -0.02 4.16 16 4 C 0.48 13.87 7.52 71.24 0.54 14.40 16 5 O -0.54 -18.81 15.65 21.96 0.34 -18.47 16 6 O -0.50 -10.06 13.33 -51.37 -0.68 -10.75 16 7 N -0.61 -23.75 2.54 -831.96 -2.11 -25.86 16 8 C 0.08 2.38 7.54 127.77 0.96 3.35 16 9 C 0.59 29.79 7.61 86.32 0.66 30.44 16 10 O -0.60 -35.01 13.86 -4.53 -0.06 -35.07 16 11 C -0.46 -22.80 6.31 24.67 0.16 -22.64 16 12 S 0.09 3.47 17.98 -56.49 -1.02 2.46 16 13 C -0.19 -6.81 11.07 66.64 0.74 -6.07 16 14 C -0.20 -8.99 7.47 22.61 0.17 -8.83 16 15 C 0.10 5.37 5.25 -20.89 -0.11 5.26 16 16 C -0.41 -24.53 9.02 23.34 0.21 -24.32 16 17 H 0.07 4.48 6.35 -2.91 -0.02 4.46 16 18 C 0.04 2.04 5.51 85.37 0.47 2.51 16 19 N -0.82 -44.91 13.92 21.89 0.30 -44.60 16 20 Si 0.98 40.13 24.48 68.60 1.68 41.80 16 21 H -0.24 -8.69 6.49 99.48 0.65 -8.04 16 22 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.25 -10.26 6.71 99.48 0.67 -9.60 16 24 H 0.08 1.47 6.67 -2.39 -0.02 1.46 16 25 H 0.10 1.76 8.11 -2.39 -0.02 1.74 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.43 4.59 9.10 -74.05 -0.67 3.92 16 28 H 0.06 1.90 7.20 -2.39 -0.02 1.89 16 29 H 0.09 2.76 4.47 -21.37 -0.10 2.66 16 30 H 0.10 2.45 6.45 -2.39 -0.02 2.44 16 31 H 0.19 5.01 8.06 -2.91 -0.02 4.98 16 32 H 0.13 5.47 4.35 -2.91 -0.01 5.46 16 33 H 0.30 14.48 8.29 -92.70 -0.77 13.71 16 Total: -1.00 -76.23 285.72 3.36 -72.86 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.32 Total: 21.31 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 4.58 Total: -3.69 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -1.80 Total: -70.46 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: -0.40 Total: -64.28 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.68 Total: 41.80 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.02 Total: 2.46 kcal Total: -76.23 3.36 -72.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901451838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.393 kcal (2) G-P(sol) polarization free energy of solvation -76.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds